ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14f21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
2dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
3dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
4dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
6emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4,... 155 2e-34
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
8dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
9dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
10tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 103 6e-19
11ref|XM_481332.1| Oryza sativa (japonica cultivar-group), mRNA 88 4e-14
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
13dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
14dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
15ref|NM_191315.1| Oryza sativa (japonica cultivar-group), predic... 48 0.031
16dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
17dbj|AK100202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.031
18dbj|AK069231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.031
19dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
20gb|AC119410.20| Medicago truncatula clone mth2-13n10, complete s... 44 0.48
21gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 7.5
22gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 7.5
23gb|AC126276.3| Mus musculus BAC clone RP23-113J19 from 10, compl... 40 7.5
24gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome 40 7.5
25gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 7.5
26emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 40 7.5
27ref|XM_967312.1| PREDICTED: Tribolium castaneum similar to GRIP ... 40 7.5
28ref|XM_966724.1| PREDICTED: Tribolium castaneum similar to CG109... 40 7.5
29emb|BX927386.11| Zebrafish DNA sequence from clone CH211-54F10 i... 40 7.5
30gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome... 40 7.5
31gb|AC026439.4| Homo sapiens chromosome 5 clone CTD-2267H19, comp... 40 7.5
32gb|AC008807.10| Homo sapiens chromosome 5 clone CTD-2087C24, com... 40 7.5
33gb|AC079794.6| Homo sapiens BAC clone RP11-588F18 from 4, comple... 40 7.5
34dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.5
35dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
36dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
37dbj|AK110479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
38gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 7.5
39emb|AL844189.5| Mouse DNA sequence from clone RP23-167P8 on chro... 40 7.5 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  204 bits (103), Expect = 2e-49
 Identities = 223/263 (84%)
 Strand = Plus / Plus

                                                                            
Query: 278      gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337
                ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 20142960 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 20143019

                                                                            
Query: 338      ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 397
                |||| ||| ||||| ||||| ||||| ||||| || |  |||||||||| |||||| |||
Sbjct: 20143020 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 20143079

                                                                            
Query: 398      caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 457
                || |||||||| |||||||||||||| |||  ||| |||||||||| |||||||| ||| 
Sbjct: 20143080 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 20143139

                                                                            
Query: 458      atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 517
                |||  |  ||||||||||| ||||||||| |||| |  ||||||||||||||| ||||||
Sbjct: 20143140 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 20143199

                                       
Query: 518      ccggacagatcgaagcttggcga 540
                || ||||| |||||||| |||||
Sbjct: 20143200 cccgacaggtcgaagctcggcga 20143222



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 154      aataaattctctaaaatttc 173
                ||||||||||||||||||||
Sbjct: 28829815 aataaattctctaaaatttc 28829834
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>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0007G12
          Length = 111819

 Score =  204 bits (103), Expect = 2e-49
 Identities = 223/263 (84%)
 Strand = Plus / Plus

                                                                        
Query: 278  gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337
            ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 8960 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 9019

                                                                        
Query: 338  ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 397
            |||| ||| ||||| ||||| ||||| ||||| || |  |||||||||| |||||| |||
Sbjct: 9020 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 9079

                                                                        
Query: 398  caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 457
            || |||||||| |||||||||||||| |||  ||| |||||||||| |||||||| ||| 
Sbjct: 9080 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 9139

                                                                        
Query: 458  atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 517
            |||  |  ||||||||||| ||||||||| |||| |  ||||||||||||||| ||||||
Sbjct: 9140 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 9199

                                   
Query: 518  ccggacagatcgaagcttggcga 540
            || ||||| |||||||| |||||
Sbjct: 9200 cccgacaggtcgaagctcggcga 9222
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>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1068H08
          Length = 152794

 Score =  204 bits (103), Expect = 2e-49
 Identities = 223/263 (84%)
 Strand = Plus / Plus

                                                                          
Query: 278    gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337
              ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 131234 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 131293

                                                                          
Query: 338    ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 397
              |||| ||| ||||| ||||| ||||| ||||| || |  |||||||||| |||||| |||
Sbjct: 131294 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 131353

                                                                          
Query: 398    caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 457
              || |||||||| |||||||||||||| |||  ||| |||||||||| |||||||| ||| 
Sbjct: 131354 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 131413

                                                                          
Query: 458    atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 517
              |||  |  ||||||||||| ||||||||| |||| |  ||||||||||||||| ||||||
Sbjct: 131414 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 131473

                                     
Query: 518    ccggacagatcgaagcttggcga 540
              || ||||| |||||||| |||||
Sbjct: 131474 cccgacaggtcgaagctcggcga 131496
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>dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003B24, full
            insert sequence
          Length = 1884

 Score =  204 bits (103), Expect = 2e-49
 Identities = 223/263 (84%)
 Strand = Plus / Minus

                                                                        
Query: 278  gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337
            ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 1492 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 1433

                                                                        
Query: 338  ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 397
            |||| ||| ||||| ||||| ||||| ||||| || |  |||||||||| |||||| |||
Sbjct: 1432 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 1373

                                                                        
Query: 398  caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 457
            || |||||||| |||||||||||||| |||  ||| |||||||||| |||||||| ||| 
Sbjct: 1372 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 1313

                                                                        
Query: 458  atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 517
            |||  |  ||||||||||| ||||||||| |||| |  ||||||||||||||| ||||||
Sbjct: 1312 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 1253

                                   
Query: 518  ccggacagatcgaagcttggcga 540
            || ||||| |||||||| |||||
Sbjct: 1252 cccgacaggtcgaagctcggcga 1230
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  155 bits (78), Expect = 2e-34
 Identities = 201/242 (83%)
 Strand = Plus / Plus

                                                                           
Query: 299     acctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgct 358
               |||||||||||||||||||||  |||||||| ||| | ||||| ||| ||||| ||||| 
Sbjct: 5627866 acctggaccatgacgagctcccacgtgagctcgaacaccttggcggagatggcgagcgcg 5627925

                                                                           
Query: 359     cccttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtg 418
               ||||| ||||| ||    |||||||||| |||||| ||||| |||||||| |||||| ||
Sbjct: 5627926 cccttctgcccgttctgcgtcgcctcgatgctcacctggcagtccttggtccgcgccatg 5627985

                                                                           
Query: 419     aagctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctg 478
               ||||| |||   || ||||||||||| ||||||| |||||||  |  ||||| ||||| |
Sbjct: 5627986 aagctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccg 5628045

                                                                           
Query: 479     gacacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggc 538
               |||||||| |||| |  ||||||||||||||  |||||||||||||| |||||||| |||
Sbjct: 5628046 gacacgaagcgcatcctctcgccgcgctcctggaacagcccggacaggtcgaagctcggc 5628105

                 
Query: 539     ga 540
               ||
Sbjct: 5628106 ga 5628107
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>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01,
             complete sequence
          Length = 162227

 Score =  155 bits (78), Expect = 2e-34
 Identities = 201/242 (83%)
 Strand = Plus / Plus

                                                                         
Query: 299   acctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgct 358
             |||||||||||||||||||||  |||||||| ||| | ||||| ||| ||||| ||||| 
Sbjct: 85073 acctggaccatgacgagctcccacgtgagctcgaacaccttggcggagatggcgagcgcg 85132

                                                                         
Query: 359   cccttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtg 418
             ||||| ||||| ||    |||||||||| |||||| ||||| |||||||| |||||| ||
Sbjct: 85133 cccttctgcccgttctgcgtcgcctcgatgctcacctggcagtccttggtccgcgccatg 85192

                                                                         
Query: 419   aagctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctg 478
             ||||| |||   || ||||||||||| ||||||| |||||||  |  ||||| ||||| |
Sbjct: 85193 aagctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccg 85252

                                                                         
Query: 479   gacacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggc 538
             |||||||| |||| |  ||||||||||||||  |||||||||||||| |||||||| |||
Sbjct: 85253 gacacgaagcgcatcctctcgccgcgctcctggaacagcccggacaggtcgaagctcggc 85312

               
Query: 539   ga 540
             ||
Sbjct: 85313 ga 85314
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  103 bits (52), Expect = 6e-19
 Identities = 193/240 (80%)
 Strand = Plus / Plus

                                                                            
Query: 301      ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 360
                ||||||||||||||||||    ||||||| ||| | ||||| ||| ||||| ||||| | 
Sbjct: 12496072 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 12496131

                                                                            
Query: 361      cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 420
                ||| || || || |  |||||||||| |||||| ||||| |||||||| | |||| ||||
Sbjct: 12496132 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 12496191

                                                                            
Query: 421      gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 480
                ||| |||   || ||||||||||| ||||||| |||||||  |  ||||| ||||| |||
Sbjct: 12496192 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 12496251

                                                                            
Query: 481      cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 540
                |||||| |||| |  |||||| |||||||  |||||||||||||  |||||||| |||||
Sbjct: 12496252 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 12496311



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 432      ccgcgatctcctccagcttggaga 455
                ||||||||||||||||||||||||
Sbjct: 31932183 ccgcgatctcctccagcttggaga 31932206
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>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0537A05
          Length = 152396

 Score =  103 bits (52), Expect = 6e-19
 Identities = 193/240 (80%)
 Strand = Plus / Plus

                                                                        
Query: 301  ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 360
            ||||||||||||||||||    ||||||| ||| | ||||| ||| ||||| ||||| | 
Sbjct: 7682 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 7741

                                                                        
Query: 361  cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 420
            ||| || || || |  |||||||||| |||||| ||||| |||||||| | |||| ||||
Sbjct: 7742 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 7801

                                                                        
Query: 421  gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 480
            ||| |||   || ||||||||||| ||||||| |||||||  |  ||||| ||||| |||
Sbjct: 7802 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 7861

                                                                        
Query: 481  cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 540
            |||||| |||| |  |||||| |||||||  |||||||||||||  |||||||| |||||
Sbjct: 7862 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 7921
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>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1135C02
          Length = 152306

 Score =  103 bits (52), Expect = 6e-19
 Identities = 193/240 (80%)
 Strand = Plus / Plus

                                                                         
Query: 301   ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 360
             ||||||||||||||||||    ||||||| ||| | ||||| ||| ||||| ||||| | 
Sbjct: 81687 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 81746

                                                                         
Query: 361   cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 420
             ||| || || || |  |||||||||| |||||| ||||| |||||||| | |||| ||||
Sbjct: 81747 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 81806

                                                                         
Query: 421   gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 480
             ||| |||   || ||||||||||| ||||||| |||||||  |  ||||| ||||| |||
Sbjct: 81807 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 81866

                                                                         
Query: 481   cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 540
             |||||| |||| |  |||||| |||||||  |||||||||||||  |||||||| |||||
Sbjct: 81867 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 81926
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>tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx13 gene for
            class III peroxidase 13 precursor, exons 1-3
          Length = 9315

 Score =  103 bits (52), Expect = 6e-19
 Identities = 193/240 (80%)
 Strand = Plus / Plus

                                                                        
Query: 301  ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 360
            ||||||||||||||||||    ||||||| ||| | ||||| ||| ||||| ||||| | 
Sbjct: 3571 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 3630

                                                                        
Query: 361  cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 420
            ||| || || || |  |||||||||| |||||| ||||| |||||||| | |||| ||||
Sbjct: 3631 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 3690

                                                                        
Query: 421  gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 480
            ||| |||   || ||||||||||| ||||||| |||||||  |  ||||| ||||| |||
Sbjct: 3691 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 3750

                                                                        
Query: 481  cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 540
            |||||| |||| |  |||||| |||||||  |||||||||||||  |||||||| |||||
Sbjct: 3751 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 3810
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>ref|XM_481332.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 768

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                       
Query: 278 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337
           ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 629 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 570

                                                                   
Query: 338 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 393
           |||| ||| ||||| || || ||||| ||||| || |  |||||||||| ||||||
Sbjct: 569 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 514



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 434 gcgatctcctccagcttggagatgatg 460
           ||||||||||||||||||| |||||||
Sbjct: 506 gcgatctcctccagcttggcgatgatg 480
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                            
Query: 278      gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337
                ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 11596265 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 11596206

                                                                        
Query: 338      ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 393
                |||| ||| ||||| || || ||||| ||||| || |  |||||||||| ||||||
Sbjct: 11596205 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 11596150



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                            
Query: 434      gcgatctcctccagcttggagatgatggtgttcaccggcgcgctggacacgaaacgcaac 493
                ||||||||||||||||||| |||||||  |  |||| |||||| ||||| |||  ||| |
Sbjct: 11596142 gcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgcatc 11596083

                                                         
Query: 494      tgctcgccgcgctcctcaaacagcccggacagatcgaagct 534
                  |||||||||||||||||||||| | ||||| ||||||||
Sbjct: 11596082 ctctcgccgcgctcctcaaacagctcagacaggtcgaagct 11596042
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>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1034_C08
          Length = 154441

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                          
Query: 278    gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337
              ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 150399 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 150340

                                                                      
Query: 338    ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 393
              |||| ||| ||||| || || ||||| ||||| || |  |||||||||| ||||||
Sbjct: 150339 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 150284



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                          
Query: 434    gcgatctcctccagcttggagatgatggtgttcaccggcgcgctggacacgaaacgcaac 493
              ||||||||||||||||||| |||||||  |  |||| |||||| ||||| |||  ||| |
Sbjct: 150276 gcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgcatc 150217

                                                       
Query: 494    tgctcgccgcgctcctcaaacagcccggacagatcgaagct 534
                |||||||||||||||||||||| | ||||| ||||||||
Sbjct: 150216 ctctcgccgcgctcctcaaacagctcagacaggtcgaagct 150176
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>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0467G09
          Length = 158204

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                         
Query: 278   gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 337
             ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | |
Sbjct: 56536 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 56477

                                                                     
Query: 338   ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 393
             |||| ||| ||||| || || ||||| ||||| || |  |||||||||| ||||||
Sbjct: 56476 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 56421



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                         
Query: 434   gcgatctcctccagcttggagatgatggtgttcaccggcgcgctggacacgaaacgcaac 493
             ||||||||||||||||||| |||||||  |  |||| |||||| ||||| |||  ||| |
Sbjct: 56413 gcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgcatc 56354

                                                      
Query: 494   tgctcgccgcgctcctcaaacagcccggacagatcgaagct 534
               |||||||||||||||||||||| | ||||| ||||||||
Sbjct: 56353 ctctcgccgcgctcctcaaacagctcagacaggtcgaagct 56313
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>ref|NM_191315.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1425

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 432  ccgcgatctcctccagcttggaga 455
            ||||||||||||||||||||||||
Sbjct: 1135 ccgcgatctcctccagcttggaga 1112
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>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1131G08
          Length = 158241

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 432    ccgcgatctcctccagcttggaga 455
              ||||||||||||||||||||||||
Sbjct: 118261 ccgcgatctcctccagcttggaga 118284
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>dbj|AK100202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040M01, full
            insert sequence
          Length = 1628

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 432  ccgcgatctcctccagcttggaga 455
            ||||||||||||||||||||||||
Sbjct: 1261 ccgcgatctcctccagcttggaga 1238
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>dbj|AK069231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013G02, full
            insert sequence
          Length = 1690

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 432  ccgcgatctcctccagcttggaga 455
            ||||||||||||||||||||||||
Sbjct: 1253 ccgcgatctcctccagcttggaga 1230
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>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0460E08
          Length = 170021

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 432   ccgcgatctcctccagcttggaga 455
             ||||||||||||||||||||||||
Sbjct: 28910 ccgcgatctcctccagcttggaga 28933
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>gb|AC119410.20| Medicago truncatula clone mth2-13n10, complete sequence
          Length = 108232

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 133   ccctgctgcttttcaccccacaataa 158
             |||| |||||||||||||||||||||
Sbjct: 39728 ccctactgcttttcaccccacaataa 39753
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    cgcaactgctcgccgcgctc 507
              ||||||||||||||||||||
Sbjct: 776887 cgcaactgctcgccgcgctc 776868
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 456     tgatggtgttcaccggcgcg 475
               ||||||||||||||||||||
Sbjct: 1456463 tgatggtgttcaccggcgcg 1456482
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>gb|AC126276.3| Mus musculus BAC clone RP23-113J19 from 10, complete sequence
          Length = 195021

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   aaattctctaaaatttcaag 176
             ||||||||||||||||||||
Sbjct: 58625 aaattctctaaaatttcaag 58606
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>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   cgcctcgaagctcacttggc 398
             ||||||||||||||||||||
Sbjct: 53644 cgcctcgaagctcacttggc 53663
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     tcaggcaggccatccacgag 225
               ||||||||||||||||||||
Sbjct: 5067969 tcaggcaggccatccacgag 5067950
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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    caataaattctctaaaattt 172
              ||||||||||||||||||||
Sbjct: 722771 caataaattctctaaaattt 722790
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>ref|XM_967312.1| PREDICTED: Tribolium castaneum similar to GRIP and coiled-coil
            domain-containing 2 (LOC661131), mRNA
          Length = 3972

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 439  ctcctccagcttggagatga 458
            ||||||||||||||||||||
Sbjct: 1329 ctcctccagcttggagatga 1310
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>ref|XM_966724.1| PREDICTED: Tribolium castaneum similar to CG10958-PA (LOC660497),
           mRNA
          Length = 2451

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 310 gacgagctccggcgtgagctggaa 333
           |||||||||| |||||||||||||
Sbjct: 862 gacgagctccagcgtgagctggaa 885
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>emb|BX927386.11| Zebrafish DNA sequence from clone CH211-54F10 in linkage group 1,
             complete sequence
          Length = 80968

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 445   cagcttggagatgatggtgt 464
             ||||||||||||||||||||
Sbjct: 33787 cagcttggagatgatggtgt 33768
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>gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome 10, complete sequence
          Length = 204309

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   aaattctctaaaatttcaag 176
             ||||||||||||||||||||
Sbjct: 21867 aaattctctaaaatttcaag 21886
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>gb|AC026439.4| Homo sapiens chromosome 5 clone CTD-2267H19, complete sequence
          Length = 105081

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  taaattctctaaaatttcaa 175
            ||||||||||||||||||||
Sbjct: 4884 taaattctctaaaatttcaa 4865
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>gb|AC008807.10| Homo sapiens chromosome 5 clone CTD-2087C24, complete sequence
          Length = 126189

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   taaattctctaaaatttcaa 175
             ||||||||||||||||||||
Sbjct: 44185 taaattctctaaaatttcaa 44204
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>gb|AC079794.6| Homo sapiens BAC clone RP11-588F18 from 4, complete sequence
          Length = 49580

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 197   aggccatcctcaggcaggccatcc 220
             ||||||||||| ||||||||||||
Sbjct: 33759 aggccatcctccggcaggccatcc 33736



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 197   aggccatcctcaggcaggccatcc 220
             ||||||||||| ||||||||||||
Sbjct: 33729 aggccatcctccggcaggccatcc 33706



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 197   aggccatcctcaggcaggccatcc 220
             ||||||||||| ||||||||||||
Sbjct: 33714 aggccatcctccggcaggccatcc 33691
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   acgagctccggcgtgagctg 330
             ||||||||||||||||||||
Sbjct: 76693 acgagctccggcgtgagctg 76712
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0028E05
          Length = 157631

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    aataaattctctaaaatttc 173
              ||||||||||||||||||||
Sbjct: 137590 aataaattctctaaaatttc 137609
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>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0545E05
          Length = 163229

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  aataaattctctaaaatttc 173
            ||||||||||||||||||||
Sbjct: 4901 aataaattctctaaaatttc 4920
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>dbj|AK110479.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-A03, full
            insert sequence
          Length = 3296

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 492  actgctcgccgcgctcctca 511
            ||||||||||||||||||||
Sbjct: 1349 actgctcgccgcgctcctca 1330
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 289     tttcttgcatacctggacca 308
               ||||||||||||||||||||
Sbjct: 2890611 tttcttgcatacctggacca 2890592
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>emb|AL844189.5| Mouse DNA sequence from clone RP23-167P8 on chromosome X, complete
             sequence
          Length = 38266

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   gctcccttgtgcccatttct 375
             ||||||||||||||||||||
Sbjct: 14048 gctcccttgtgcccatttct 14029


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,004,139
Number of Sequences: 3902068
Number of extensions: 4004139
Number of successful extensions: 84218
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83845
Number of HSP's gapped (non-prelim): 364
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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