ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14f20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 75 1e-13
214KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 63 5e-10
3PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 49 1e-05
4HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly... 35 0.15
5PDLI7_RAT (Q9Z1Z9) PDZ and LIM domain protein 7 (LIM mineralizat... 30 6.2
6MUTS_BACHK (Q6HF46) DNA mismatch repair protein mutS 29 8.1
7MUTS_BACC1 (P61665) DNA mismatch repair protein mutS 29 8.1
8MUTS_BACAN (Q81WR3) DNA mismatch repair protein mutS 29 8.1
9MUTS_BACCZ (Q636Q7) DNA mismatch repair protein mutS 29 8.1

>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 40/89 (44%), Positives = 50/89 (56%)
 Frame = -2

Query: 498 STGRGSCSINTLKLGVCANVLNLLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANI 319
           S   G C I+ LKL VCA VL L+K  +G+P  EQ                   AI+AN+
Sbjct: 42  SHSHGRCPIDALKLKVCAKVLGLVK--VGLPQYEQCCPLLEGLVDLDAALCLCTAIKANV 99

Query: 318 LGIKLNVPIDLTLLLNQCGKKCPANFTCP 232
           LGI LNVP+ L  +LN CG+ CP +FTCP
Sbjct: 100 LGIHLNVPLSLNFILNNCGRICPEDFTCP 128



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>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 37/85 (43%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = -2

Query: 486 GSCSINTLKLGVCANVLNLL-KLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGI 310
           G C  + LKLGVCA+VLNL+  + IG P                       AI+ANILG 
Sbjct: 52  GKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGK 111

Query: 309 KLNVPIDLTLLLNQCGKKCPANFTC 235
            LN+PI L+L+LN CGK+ P  F C
Sbjct: 112 NLNLPIALSLVLNNCGKQVPNGFEC 136



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>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = -2

Query: 483 SCSINTLKLGVCANVLN-LLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGIK 307
           +C I+ LKLG C +VL  L+ + IG  A +                     IR  +L I 
Sbjct: 260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNIN 319

Query: 306 LNVPIDLTLLLNQCGKKCPANFTCP 232
           + +PI L +L++ CGK  P +F CP
Sbjct: 320 IILPIALQVLIDDCGKYPPKDFKCP 344



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>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)|
          Length = 80

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -2

Query: 333 IRANILGIKLNVPIDLTLLLNQCGKKCPANFTCP 232
           I+   LGI LN+  +L L+LN CG+  P+N TCP
Sbjct: 46  IQLRALGI-LNLNRNLQLILNSCGRSYPSNATCP 78



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>PDLI7_RAT (Q9Z1Z9) PDZ and LIM domain protein 7 (LIM mineralization protein)|
           (LMP) (Protein enigma)
          Length = 457

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -1

Query: 553 ALLPTGRPHPADPPTFRAVDRQGQLLDQHVEAGRVRQRAEPAEAQDRRAG 404
           +L  T RP  A PPT  A+ + GQLL Q V     ++  E  E    R G
Sbjct: 111 SLNKTARPFGAPPPTDSALSQNGQLLRQLVPDASKQRLMENTEDWRPRPG 160



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>MUTS_BACHK (Q6HF46) DNA mismatch repair protein mutS|
          Length = 890

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 22  LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 156
           LLQ+ +S + +P   + ++L+  AY A + + A PC+ LT  L R
Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400



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>MUTS_BACC1 (P61665) DNA mismatch repair protein mutS|
          Length = 892

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 22  LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 156
           LLQ+ +S + +P   + ++L+  AY A + + A PC+ LT  L R
Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400



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>MUTS_BACAN (Q81WR3) DNA mismatch repair protein mutS|
          Length = 892

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 22  LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 156
           LLQ+ +S + +P   + ++L+  AY A + + A PC+ LT  L R
Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400



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>MUTS_BACCZ (Q636Q7) DNA mismatch repair protein mutS|
          Length = 894

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 22  LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 156
           LLQ+ +S + +P   + ++L+  AY A + + A PC+ LT  L R
Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,169,554
Number of Sequences: 219361
Number of extensions: 1007262
Number of successful extensions: 2762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2759
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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