Clone Name | rbasd14f20 |
---|---|
Clone Library Name | barley_pub |
>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific| protein ZRP3) Length = 129 Score = 75.5 bits (184), Expect = 1e-13 Identities = 40/89 (44%), Positives = 50/89 (56%) Frame = -2 Query: 498 STGRGSCSINTLKLGVCANVLNLLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANI 319 S G C I+ LKL VCA VL L+K +G+P EQ AI+AN+ Sbjct: 42 SHSHGRCPIDALKLKVCAKVLGLVK--VGLPQYEQCCPLLEGLVDLDAALCLCTAIKANV 99 Query: 318 LGIKLNVPIDLTLLLNQCGKKCPANFTCP 232 LGI LNVP+ L +LN CG+ CP +FTCP Sbjct: 100 LGIHLNVPLSLNFILNNCGRICPEDFTCP 128
>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor| Length = 137 Score = 63.2 bits (152), Expect = 5e-10 Identities = 37/85 (43%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = -2 Query: 486 GSCSINTLKLGVCANVLNLL-KLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGI 310 G C + LKLGVCA+VLNL+ + IG P AI+ANILG Sbjct: 52 GKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGK 111 Query: 309 KLNVPIDLTLLLNQCGKKCPANFTC 235 LN+PI L+L+LN CGK+ P F C Sbjct: 112 NLNLPIALSLVLNNCGKQVPNGFEC 136
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Frame = -2 Query: 483 SCSINTLKLGVCANVLN-LLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGIK 307 +C I+ LKLG C +VL L+ + IG A + IR +L I Sbjct: 260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNIN 319 Query: 306 LNVPIDLTLLLNQCGKKCPANFTCP 232 + +PI L +L++ CGK P +F CP Sbjct: 320 IILPIALQVLIDDCGKYPPKDFKCP 344
>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)| Length = 80 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/34 (50%), Positives = 23/34 (67%) Frame = -2 Query: 333 IRANILGIKLNVPIDLTLLLNQCGKKCPANFTCP 232 I+ LGI LN+ +L L+LN CG+ P+N TCP Sbjct: 46 IQLRALGI-LNLNRNLQLILNSCGRSYPSNATCP 78
>PDLI7_RAT (Q9Z1Z9) PDZ and LIM domain protein 7 (LIM mineralization protein)| (LMP) (Protein enigma) Length = 457 Score = 29.6 bits (65), Expect = 6.2 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = -1 Query: 553 ALLPTGRPHPADPPTFRAVDRQGQLLDQHVEAGRVRQRAEPAEAQDRRAG 404 +L T RP A PPT A+ + GQLL Q V ++ E E R G Sbjct: 111 SLNKTARPFGAPPPTDSALSQNGQLLRQLVPDASKQRLMENTEDWRPRPG 160
>MUTS_BACHK (Q6HF46) DNA mismatch repair protein mutS| Length = 890 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +1 Query: 22 LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 156 LLQ+ +S + +P + ++L+ AY A + + A PC+ LT L R Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400
>MUTS_BACC1 (P61665) DNA mismatch repair protein mutS| Length = 892 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +1 Query: 22 LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 156 LLQ+ +S + +P + ++L+ AY A + + A PC+ LT L R Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400
>MUTS_BACAN (Q81WR3) DNA mismatch repair protein mutS| Length = 892 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +1 Query: 22 LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 156 LLQ+ +S + +P + ++L+ AY A + + A PC+ LT L R Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400
>MUTS_BACCZ (Q636Q7) DNA mismatch repair protein mutS| Length = 894 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +1 Query: 22 LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 156 LLQ+ +S + +P + ++L+ AY A + + A PC+ LT L R Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,169,554 Number of Sequences: 219361 Number of extensions: 1007262 Number of successful extensions: 2762 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2696 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2759 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)