ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14f18 |
|---|---|
| Clone Library Name | barley_pub |
>TPC6B_HUMAN (Q86SZ2) Trafficking protein particle complex subunit 6B| Length = 158 Score = 132 bits (331), Expect = 1e-30 Identities = 67/139 (48%), Positives = 90/139 (64%) Frame = -3 Query: 601 RIEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 422 ++E +GF+VG L ER+T + RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL Sbjct: 35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94 Query: 421 QDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPC 242 QDN FR LT++ S G + S L F CGLIRG L+NLGI Sbjct: 95 QDNKFRLLTQM-----------------SAGKQYLEHASKYLAFTCGLIRGGLSNLGIKS 137 Query: 241 AVSADMSNLPACSFVVRIK 185 V+A++S++PAC F V I+ Sbjct: 138 IVTAEVSSMPACKFQVMIQ 156
>TPC6B_MOUSE (Q9D289) Trafficking protein particle complex subunit 6B| Length = 158 Score = 130 bits (328), Expect = 3e-30 Identities = 66/139 (47%), Positives = 90/139 (64%) Frame = -3 Query: 601 RIEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 422 ++E++GF+VG L ER+T + RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL Sbjct: 35 KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94 Query: 421 QDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPC 242 QDN FR L ++ S G + S L F CGLIRG L+NLGI Sbjct: 95 QDNKFRLLIQL-----------------SAGKQYLEHASKYLAFTCGLIRGGLSNLGIKS 137 Query: 241 AVSADMSNLPACSFVVRIK 185 V+A++S++PAC F V I+ Sbjct: 138 IVTAEVSSMPACKFQVMIQ 156
>TPC6A_MOUSE (Q78XR0) Trafficking protein particle complex subunit 6A| Length = 159 Score = 107 bits (268), Expect = 3e-23 Identities = 56/138 (40%), Positives = 80/138 (57%) Frame = -3 Query: 598 IEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 419 +E +GF+VG L ER +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQ Sbjct: 37 LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQ 96 Query: 418 DNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPCA 239 DN F L + GS G + L F CGL+ GAL LG Sbjct: 97 DNSFPLLVTM----------------GS-GPQYLEEAPKFLAFTCGLLCGALHTLGFQSL 139 Query: 238 VSADMSNLPACSFVVRIK 185 V+A +++LPAC F V I+ Sbjct: 140 VTASVASLPACKFQVVIQ 157
>YA95_SCHPO (Q09784) Hypothetical protein C13G6.05c in chromosome I| Length = 245 Score = 107 bits (266), Expect = 4e-23 Identities = 52/136 (38%), Positives = 75/136 (55%) Frame = -3 Query: 598 IEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 419 +E+IGFQVG +++ER + R R T+ + ++F+C++ W +F+K +DNLKTN RG FVL Sbjct: 43 LESIGFQVGRKITERLLLNRNRITETTDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLT 102 Query: 418 DNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPCA 239 D +F W T++ + G AQ T+ YFP G IRG + G Sbjct: 103 DTYFYWFTKM---------------TAMTGTEMAQITTPYFYFPSGFIRGVVYTFGYSAQ 147 Query: 238 VSADMSNLPACSFVVR 191 V A NLP C F V+ Sbjct: 148 VIAQCPNLPTCIFHVK 163
>TRS33_YEAST (Q99394) Transport protein particle 33 kDa subunit (TRAPP 33 kDa| subunit) Length = 268 Score = 79.7 bits (195), Expect = 8e-15 Identities = 48/127 (37%), Positives = 65/127 (51%), Gaps = 5/127 (3%) Frame = -3 Query: 616 ELAAGRIEAIGFQVGHQLSERYTMERP-----RFTDHLEAIKFICKDFWSELFKKQIDNL 452 E R+ IGFQ+G +LSE + D L +KFIC+D W ++F KQIDNL Sbjct: 117 EKVLARLRNIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNL 176 Query: 451 KTNHRGTFVLQDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIR 272 KTNHRGTF L D +R + SL+ +N + + L P G+IR Sbjct: 177 KTNHRGTFYLLDYDYRPIQSFSLEEDAKNEE-------------LKMIEPFLEIPVGIIR 223 Query: 271 GALTNLG 251 G L++LG Sbjct: 224 GVLSSLG 230
>TRS31_YEAST (Q03337) Transport protein particle 31 kDa subunit (TRAPP 31 kDa| subunit) Length = 283 Score = 38.9 bits (89), Expect = 0.015 Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 2/114 (1%) Frame = -3 Query: 565 LSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNL-KTNHRGT-FVLQDNHFRWLTR 392 LS T R R L+ ++FI WS LF D+L K++ R +++ DN Sbjct: 162 LSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNF------ 215 Query: 391 VSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPCAVSA 230 P + EN S YF CG+I+G L N G PC V+A Sbjct: 216 ----PTLTQFIPGENVSCE-------------YFVCGIIKGFLFNAGFPCGVTA 252
>YKQ8_CAEEL (P34303) Putative zinc finger protein C06E1.8| Length = 397 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/69 (26%), Positives = 31/69 (44%) Frame = -3 Query: 400 LTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPCAVSADMS 221 L + L A N D+ N++ + + L+ P LIR L NL P ++ + + Sbjct: 121 LLHIHLQTATNNNDSNNNNNSVIPHGVINRSCHLITDPFQLIRTPLLNLPTPQSLESSVP 180 Query: 220 NLPACSFVV 194 +LP S + Sbjct: 181 SLPIASIPI 189
>LEPA_THEFY (Q47RQ0) GTP-binding protein lepA| Length = 614 Score = 30.4 bits (67), Expect = 5.3 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +1 Query: 118 LSKILEP--QARFISDLFYFSQIMSLCAPRKNMLEGLTYLQRQHME 249 +++I EP +A ++ Y IM LC R+ +L+G+ YL +E Sbjct: 403 IAEIREPVVKATVLTPSDYVGPIMELCQGRRGVLDGMEYLSEDRVE 448
>B3G2S_DROME (Q9VLA1) Galactosylgalactosylxylosylprotein| 3-beta-glucuronosyltransferase S (EC 2.4.1.135) (Beta-1,3-glucuronyltransferase S) (Glucuronosyltransferase-S) (GlcAT-S) (UDP-glucuronosyltransferase-S) (DmGlcAT-BSI) Length = 409 Score = 30.0 bits (66), Expect = 7.0 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Frame = +2 Query: 521 MISKSRALHRISL--GELMANLEADGLNATGGELRLGGVEAAAVGSHH----LHYHPIN 679 M+ K RI L G L L A G+ RLGG E + GSHH +++ P+N Sbjct: 44 MVRKGGVARRICLIGGALFLLLVALCYLTLSGDTRLGGSEDSEEGSHHGLDSMNFRPLN 102
>FTSH_HELPY (P71408) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 632 Score = 30.0 bits (66), Expect = 7.0 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -3 Query: 649 AYCGRFYAAKPELAAGRIEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFK 470 A+ G Y + E + E + + + L ERY + +D+ EAI+ + K ELF Sbjct: 543 AFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYKHVKQTLSDYREAIEIMVK----ELFD 598 Query: 469 KQI 461 K++ Sbjct: 599 KEV 601
>FTSH_HELPJ (Q9ZM66) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 632 Score = 30.0 bits (66), Expect = 7.0 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -3 Query: 649 AYCGRFYAAKPELAAGRIEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFK 470 A+ G Y + E + E + + + L ERY + +D+ EAI+ + K ELF Sbjct: 543 AFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYQHVKQTLSDYREAIEIMVK----ELFD 598 Query: 469 KQI 461 K++ Sbjct: 599 KEV 601
>HEMH_SYNY3 (P54225) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 29.6 bits (65), Expect = 9.1 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +3 Query: 162 VLFLSDHVFMRTTKEHAGRFDISAETAHGIPKFVRAPLINPHGKYKSMLVVWAAESPNDP 341 + F+S+H+ T +E + AE A GI F R P +N H + L +S NDP Sbjct: 269 ISFVSEHI--ETLQEIDIEYREIAEEA-GIDNFQRVPALNTHPVFIDALAQMVMDSLNDP 325 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,929,537 Number of Sequences: 219361 Number of extensions: 1865694 Number of successful extensions: 4602 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4476 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4592 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
