ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14f16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479609.1| Oryza sativa (japonica cultivar-group), mRNA 137 6e-29
2dbj|AK062111.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 5e-26
3dbj|AK099674.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
5dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
6gb|AE013057.1| Thermoanaerobacter tengcongensis MB4, section 84 ... 42 2.4
7emb|AL953849.10| Mouse DNA sequence from clone RP23-384G9 on chr... 42 2.4
8ref|XM_420052.1| PREDICTED: Gallus gallus similar to MGC68696 pr... 40 9.7
9ref|XM_381885.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 9.7
10gb|AC132255.3| Mus musculus BAC clone RP24-472I15 from chromosom... 40 9.7
11gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosom... 40 9.7
12emb|AL589791.4| Human DNA sequence from clone RP11-505P2 on chro... 40 9.7
13gb|AC124854.2| Homo sapiens chromosome 5 clone RP11-133F8, compl... 40 9.7
14gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complet... 40 9.7
15gb|AC112236.3| Homo sapiens BAC clone RP11-308D13 from 4, comple... 40 9.7
16gb|AC016773.8| Homo sapiens BAC clone RP11-572O17 from 4, comple... 40 9.7
17gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 9.7
18gb|AC026780.5| Homo sapiens chromosome 5 clone CTC-529L17, compl... 40 9.7
19gb|U84248.2|AAU84248 Aedes aegypti blood meal-induced protein (M... 40 9.7
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
21gb|AC009981.6|AC009981 Drosophila melanogaster, chromosome 3R, r... 40 9.7
22gb|AC008215.5|AC008215 Drosophila melanogaster, chromosome 3R, r... 40 9.7
23ref|XM_233761.3| PREDICTED: Rattus norvegicus IBR domain contain... 40 9.7
24dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
25gb|AE003757.2| Drosophila melanogaster chromosome 3R, section 95... 40 9.7
26gb|AC005691.1|AC005691 Homo sapiens chromosome 17, clone hRPK.2... 40 9.7
27gb|AF018435.1|ACADL3 Mus musculus long-chain acyl-CoA dehydrogen... 40 9.7
28gb|AC151721.2| Mus musculus BAC clone RP23-68E12 from 5, complet... 40 9.7
29gb|M63543.1|HUMHDAD Human cosmid HDAD (8C10E13) DNA 40 9.7
30gb|M63544.1|HUMHDABCD Human DNA sequence of contig comprising 3 ... 40 9.7 
>ref|XM_479609.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3465

 Score =  137 bits (69), Expect = 6e-29
 Identities = 304/381 (79%), Gaps = 1/381 (0%)
 Strand = Plus / Minus

                                                                        
Query: 319  atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 378
            |||| |||||| ||| |||| || || |||||||||||||| ||||||   |||||||||
Sbjct: 3302 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 3243

                                                                        
Query: 379  agaaacgctggctctcggccgtcacaggcatggcaacaatggctaggaaaaggaaaaggt 438
            ||||| ||||| ||  | || ||||||||||||  |||||||||||| | ||||  ||| 
Sbjct: 3242 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 3183

                                                                        
Query: 439  gttgcaacaaccctatccttgttgtgcgcaatcccggacaacgctaagatggtgtgtgtc 498
            ||    |||||   ||||| |||||| |||||||| ||||  |||||||| |||||||| 
Sbjct: 3182 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 3123

                                                                        
Query: 499  gctcgccgtgctacgttcgtgaaagaagattgatccaatggggaccgggcacaaatgtgc 558
            |||| |||||| || ||| |||||  ||||||| ||||||||||| | ||||| ||  | 
Sbjct: 3122 gctctccgtgcaacattcttgaaatcagattgacccaatggggactgagcacacattagt 3063

                                                                        
Query: 559  ttgatgctcttcttgacaataggaatcagctggtccttggcatttgctacttctcggaaa 618
            |||| | || |||||||||||||||||||||| ||||| |||  | ||  || | |||||
Sbjct: 3062 ttgaggttcctcttgacaataggaatcagctgttccttagcaccttctgtttgttggaaa 3003

                                                                        
Query: 619  ttgcttccaccctcatcagtgcattgattaagattacttgcagactgaacaaaattgtga 678
            |||||||||||| |||  |||| || | |||||   ||||| | ||||||||||   |||
Sbjct: 3002 ttgcttccacccccataggtgcgttcaataagaccccttgctggctgaacaaaa-gatga 2944

                                 
Query: 679  gctactctgctggctctgcat 699
            ||||||||||||| |||||||
Sbjct: 2943 gctactctgctggttctgcat 2923



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 210  gtataatctttccaactgtctataattgaaagaatgacaccaat 253
            |||||||||||  | |||| ||||||||||||||||||| ||||
Sbjct: 3404 gtataatcttttgatctgtttataattgaaagaatgacaacaat 3361
to top
>dbj|AK062111.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B09, full
           insert sequence
          Length = 499

 Score =  127 bits (64), Expect = 5e-26
 Identities = 250/312 (80%)
 Strand = Plus / Minus

                                                                       
Query: 319 atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 378
           |||| |||||| ||| |||| || || |||||||||||||| ||||||   |||||||||
Sbjct: 324 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 265

                                                                       
Query: 379 agaaacgctggctctcggccgtcacaggcatggcaacaatggctaggaaaaggaaaaggt 438
           ||||| ||||| ||  | || ||||||||||||  |||||||||||| | ||||  ||| 
Sbjct: 264 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 205

                                                                       
Query: 439 gttgcaacaaccctatccttgttgtgcgcaatcccggacaacgctaagatggtgtgtgtc 498
           ||    |||||   ||||| |||||| |||||||| ||||  |||||||| |||||||| 
Sbjct: 204 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 145

                                                                       
Query: 499 gctcgccgtgctacgttcgtgaaagaagattgatccaatggggaccgggcacaaatgtgc 558
           |||| |||||| || ||| |||||  ||||||| ||||||||||| | ||||| ||  | 
Sbjct: 144 gctctccgtgcaacattcttgaaatcagattgacccaatggggactgagcacacattagt 85

                                                                       
Query: 559 ttgatgctcttcttgacaataggaatcagctggtccttggcatttgctacttctcggaaa 618
           |||| | || |||||||||||||||||||||| ||||| |||  | ||  || | |||||
Sbjct: 84  ttgaggttcctcttgacaataggaatcagctgttccttagcaccttctgtttgttggaaa 25

                       
Query: 619 ttgcttccaccc 630
           ||||||||||||
Sbjct: 24  ttgcttccaccc 13



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 210 gtataatctttccaactgtctataattgaaagaatgacaccaat 253
           |||||||||||  | |||| ||||||||||||||||||| ||||
Sbjct: 426 gtataatcttttgatctgtttataattgaaagaatgacaacaat 383
to top
>dbj|AK099674.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069F21, full
            insert sequence
          Length = 3465

 Score =  121 bits (61), Expect = 3e-24
 Identities = 302/381 (79%), Gaps = 1/381 (0%)
 Strand = Plus / Minus

                                                                        
Query: 319  atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 378
            |||| |||||| ||| |||| || || |||||||||||||| ||||||   |||||||||
Sbjct: 3302 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 3243

                                                                        
Query: 379  agaaacgctggctctcggccgtcacaggcatggcaacaatggctaggaaaaggaaaaggt 438
            ||||| ||||| ||  | || ||||||||||||  |||||||||||| | ||||  ||| 
Sbjct: 3242 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 3183

                                                                        
Query: 439  gttgcaacaaccctatccttgttgtgcgcaatcccggacaacgctaagatggtgtgtgtc 498
            ||    |||||   ||||| |||||| |||||||| ||||  |||||||| |||||||| 
Sbjct: 3182 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 3123

                                                                        
Query: 499  gctcgccgtgctacgttcgtgaaagaagattgatccaatggggaccgggcacaaatgtgc 558
            |||| |||||| || ||| |||||  ||||||| |||||| |||| | | ||| ||  | 
Sbjct: 3122 gctctccgtgcaacattcttgaaatcagattgacccaatgcggactgagtacacattagt 3063

                                                                        
Query: 559  ttgatgctcttcttgacaataggaatcagctggtccttggcatttgctacttctcggaaa 618
            |||| | || |||||||||||||||||||||| ||||| |||  | ||  || | |||||
Sbjct: 3062 ttgaggttcctcttgacaataggaatcagctgttccttagcaccttctgtttgttggaaa 3003

                                                                        
Query: 619  ttgcttccaccctcatcagtgcattgattaagattacttgcagactgaacaaaattgtga 678
            |||||||||||| |||  |||| || | |||||   ||||| | ||||||||||   |||
Sbjct: 3002 ttgcttccacccccataggtgcgttcaataagaccccttgctggctgaacaaaa-gatga 2944

                                 
Query: 679  gctactctgctggctctgcat 699
            ||||||||||||| |||||||
Sbjct: 2943 gctactctgctggttctgcat 2923



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 210  gtataatctttccaactgtctataattgaaagaatgacaccaat 253
            |||||||||||  | |||| ||||||||||||||||||| ||||
Sbjct: 3404 gtataatcttttgatctgtttataattgaaagaatgacaacaat 3361
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 170/213 (79%)
 Strand = Plus / Plus

                                                                            
Query: 319      atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 378
                |||| |||||| ||| |||| || || |||||||||||||| ||||||   |||||||||
Sbjct: 29299658 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 29299717

                                                                            
Query: 379      agaaacgctggctctcggccgtcacaggcatggcaacaatggctaggaaaaggaaaaggt 438
                ||||| ||||| ||  | || ||||||||||||  |||||||||||| | ||||  ||| 
Sbjct: 29299718 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 29299777

                                                                            
Query: 439      gttgcaacaaccctatccttgttgtgcgcaatcccggacaacgctaagatggtgtgtgtc 498
                ||    |||||   ||||| |||||| |||||||| ||||  |||||||| |||||||| 
Sbjct: 29299778 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 29299837

                                                 
Query: 499      gctcgccgtgctacgttcgtgaaagaagattga 531
                |||| |||||| || ||| |||||  |||||||
Sbjct: 29299838 gctctccgtgcaacattcttgaaatcagattga 29299870



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 134/167 (80%), Gaps = 1/167 (0%)
 Strand = Plus / Plus

                                                                            
Query: 533      ccaatggggaccgggcacaaatgtgcttgatgctcttcttgacaataggaatcagctggt 592
                ||||||||||| | ||||| ||  | |||| | || |||||||||||||||||||||| |
Sbjct: 29300487 ccaatggggactgagcacacattagtttgaggttcctcttgacaataggaatcagctgtt 29300546

                                                                            
Query: 593      ccttggcatttgctacttctcggaaattgcttccaccctcatcagtgcattgattaagat 652
                |||| |||  | ||  || | ||||||||||||||||| |||  |||| || | ||||| 
Sbjct: 29300547 ccttagcaccttctgtttgttggaaattgcttccacccccataggtgcgttcaataagac 29300606

                                                               
Query: 653      tacttgcagactgaacaaaattgtgagctactctgctggctctgcat 699
                  ||||| | ||||||||||   |||||||||||||||| |||||||
Sbjct: 29300607 cccttgctggctgaacaaaa-gatgagctactctgctggttctgcat 29300652



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 210      gtataatctttccaactgtctataattgaaagaatgacaccaat 253
                |||||||||||  | |||| ||||||||||||||||||| ||||
Sbjct: 29299556 gtataatcttttgatctgtttataattgaaagaatgacaacaat 29299599
to top
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0597G07
          Length = 152928

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 170/213 (79%)
 Strand = Plus / Plus

                                                                         
Query: 319   atgtgactgacaacatcaccgacgaatgagttgaagcatgacgagcagatagttctcatg 378
             |||| |||||| ||| |||| || || |||||||||||||| ||||||   |||||||||
Sbjct: 88347 atgtaactgacgacaccaccaacaaaggagttgaagcatgatgagcagcaggttctcatg 88406

                                                                         
Query: 379   agaaacgctggctctcggccgtcacaggcatggcaacaatggctaggaaaaggaaaaggt 438
             ||||| ||||| ||  | || ||||||||||||  |||||||||||| | ||||  ||| 
Sbjct: 88407 agaaatgctggttcctgaccatcacaggcatggttacaatggctagggagaggatgaggc 88466

                                                                         
Query: 439   gttgcaacaaccctatccttgttgtgcgcaatcccggacaacgctaagatggtgtgtgtc 498
             ||    |||||   ||||| |||||| |||||||| ||||  |||||||| |||||||| 
Sbjct: 88467 gtactgacaacaaaatcctcgttgtgtgcaatcccagacagtgctaagatagtgtgtgtt 88526

                                              
Query: 499   gctcgccgtgctacgttcgtgaaagaagattga 531
             |||| |||||| || ||| |||||  |||||||
Sbjct: 88527 gctctccgtgcaacattcttgaaatcagattga 88559



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 134/167 (80%), Gaps = 1/167 (0%)
 Strand = Plus / Plus

                                                                         
Query: 533   ccaatggggaccgggcacaaatgtgcttgatgctcttcttgacaataggaatcagctggt 592
             ||||||||||| | ||||| ||  | |||| | || |||||||||||||||||||||| |
Sbjct: 89176 ccaatggggactgagcacacattagtttgaggttcctcttgacaataggaatcagctgtt 89235

                                                                         
Query: 593   ccttggcatttgctacttctcggaaattgcttccaccctcatcagtgcattgattaagat 652
             |||| |||  | ||  || | ||||||||||||||||| |||  |||| || | ||||| 
Sbjct: 89236 ccttagcaccttctgtttgttggaaattgcttccacccccataggtgcgttcaataagac 89295

                                                            
Query: 653   tacttgcagactgaacaaaattgtgagctactctgctggctctgcat 699
               ||||| | ||||||||||   |||||||||||||||| |||||||
Sbjct: 89296 cccttgctggctgaacaaaa-gatgagctactctgctggttctgcat 89341



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 210   gtataatctttccaactgtctataattgaaagaatgacaccaat 253
             |||||||||||  | |||| ||||||||||||||||||| ||||
Sbjct: 88245 gtataatcttttgatctgtttataattgaaagaatgacaacaat 88288
to top
>gb|AE013057.1| Thermoanaerobacter tengcongensis MB4, section 84 of 244 of the complete
             genome
          Length = 14939

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 557   gcttgatgctcttcttgacaa 577
             |||||||||||||||||||||
Sbjct: 11736 gcttgatgctcttcttgacaa 11756
to top
>emb|AL953849.10| Mouse DNA sequence from clone RP23-384G9 on chromosome 2, complete
             sequence
          Length = 38989

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 587   gctggtccttggcatttgcta 607
             |||||||||||||||||||||
Sbjct: 22123 gctggtccttggcatttgcta 22143
to top
>ref|XM_420052.1| PREDICTED: Gallus gallus similar to MGC68696 protein (LOC422046),
           mRNA
          Length = 1722

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 423 aggaaaaggaaaaggtgttg 442
           ||||||||||||||||||||
Sbjct: 330 aggaaaaggaaaaggtgttg 349
to top
>ref|XM_381885.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01709.1)
            partial mRNA
          Length = 3045

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 573  gacaataggaatcagctggt 592
            ||||||||||||||||||||
Sbjct: 2512 gacaataggaatcagctggt 2531
to top
>gb|AC132255.3| Mus musculus BAC clone RP24-472I15 from chromosome 5, complete sequence
          Length = 168528

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   ctcaattaagaagttagttccaag 142
             |||||||||||||||||| |||||
Sbjct: 87396 ctcaattaagaagttagtgccaag 87419
to top
>gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosome 1, complete sequence
          Length = 183428

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 584   tcagctggtccttggcattt 603
             ||||||||||||||||||||
Sbjct: 96876 tcagctggtccttggcattt 96895
to top
>emb|AL589791.4| Human DNA sequence from clone RP11-505P2 on chromosome 13, complete
              sequence
          Length = 161474

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    actcaattaagaagttagtt 137
              ||||||||||||||||||||
Sbjct: 156771 actcaattaagaagttagtt 156790
to top
>gb|AC124854.2| Homo sapiens chromosome 5 clone RP11-133F8, complete sequence
          Length = 149205

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 668   caaaattgtgagctactctg 687
             ||||||||||||||||||||
Sbjct: 44821 caaaattgtgagctactctg 44840
to top
>gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complete sequence
          Length = 153458

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    actgtaagacaagagatcat 54
             ||||||||||||||||||||
Sbjct: 62576 actgtaagacaagagatcat 62595
to top
>gb|AC112236.3| Homo sapiens BAC clone RP11-308D13 from 4, complete sequence
          Length = 160615

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 564   gctcttcttgacaataggaa 583
             ||||||||||||||||||||
Sbjct: 51582 gctcttcttgacaataggaa 51563
to top
>gb|AC016773.8| Homo sapiens BAC clone RP11-572O17 from 4, complete sequence
          Length = 189223

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    gtgccccccttctcaggaag 76
             ||||||||||||||||||||
Sbjct: 53300 gtgccccccttctcaggaag 53281
to top
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    acaggcatggcaacaatggc 421
              ||||||||||||||||||||
Sbjct: 582370 acaggcatggcaacaatggc 582389
to top
>gb|AC026780.5| Homo sapiens chromosome 5 clone CTC-529L17, complete sequence
          Length = 170059

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 668    caaaattgtgagctactctg 687
              ||||||||||||||||||||
Sbjct: 140489 caaaattgtgagctactctg 140508
to top
>gb|U84248.2|AAU84248 Aedes aegypti blood meal-induced protein (MRRG) mRNA, complete cds
          Length = 3307

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 684  tctgctggctctgcatgaaa 703
            ||||||||||||||||||||
Sbjct: 1340 tctgctggctctgcatgaaa 1359
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    aggaaaaggaaaaggtgttg 442
              ||||||||||||||||||||
Sbjct: 777654 aggaaaaggaaaaggtgttg 777673
to top
>gb|AC009981.6|AC009981 Drosophila melanogaster, chromosome 3R, region 97C-97D, BAC clone
             BACR24O14, complete sequence
          Length = 170356

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 412   caacaatggctaggaaaaggaaaa 435
             ||||||||||| ||||||||||||
Sbjct: 11359 caacaatggctgggaaaaggaaaa 11336
to top
>gb|AC008215.5|AC008215 Drosophila melanogaster, chromosome 3R, region 97C-97C, BAC clone
              BACR08N03, complete sequence
          Length = 165439

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 412    caacaatggctaggaaaaggaaaa 435
              ||||||||||| ||||||||||||
Sbjct: 148077 caacaatggctgggaaaaggaaaa 148054
to top
>ref|XM_233761.3| PREDICTED: Rattus norvegicus IBR domain containing 3 (predicted)
           (Ibrdc3_predicted), mRNA
          Length = 2393

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 684 tctgctggctctgcatgaaa 703
           ||||||||||||||||||||
Sbjct: 785 tctgctggctctgcatgaaa 804
to top
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0427G12
          Length = 185545

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   aggaaaaggaaaaggtgttg 442
             ||||||||||||||||||||
Sbjct: 76874 aggaaaaggaaaaggtgttg 76893
to top
>gb|AE003757.2| Drosophila melanogaster chromosome 3R, section 95 of 118 of the complete
              sequence
          Length = 191834

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 412    caacaatggctaggaaaaggaaaa 435
              ||||||||||| ||||||||||||
Sbjct: 156608 caacaatggctgggaaaaggaaaa 156585
to top
>gb|AC005691.1|AC005691 Homo sapiens chromosome 17, clone  hRPK.28_A_22, complete sequence
          Length = 156821

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   caagctatccaacattcatt 194
             ||||||||||||||||||||
Sbjct: 96761 caagctatccaacattcatt 96742
to top
>gb|AF018435.1|ACADL3 Mus musculus long-chain acyl-CoA dehydrogenase (Acadl) gene, exons 2
            and 3
          Length = 5283

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 584  tcagctggtccttggcattt 603
            ||||||||||||||||||||
Sbjct: 2686 tcagctggtccttggcattt 2667
to top
>gb|AC151721.2| Mus musculus BAC clone RP23-68E12 from 5, complete sequence
          Length = 218524

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   ctcaattaagaagttagttccaag 142
             |||||||||||||||||| |||||
Sbjct: 18280 ctcaattaagaagttagtgccaag 18303
to top
>gb|M63543.1|HUMHDAD Human cosmid HDAD (8C10E13) DNA
          Length = 40103

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    gtgccccccttctcaggaag 76
             ||||||||||||||||||||
Sbjct: 36489 gtgccccccttctcaggaag 36508
to top
>gb|M63544.1|HUMHDABCD Human DNA sequence of contig comprising 3 cosmids (HDAB, HDAC, HDAD)
          Length = 58864

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    gtgccccccttctcaggaag 76
             ||||||||||||||||||||
Sbjct: 55250 gtgccccccttctcaggaag 55269


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,621,435
Number of Sequences: 3902068
Number of extensions: 5621435
Number of successful extensions: 108630
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108499
Number of HSP's gapped (non-prelim): 122
length of query: 707
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 684
effective length of database: 17,143,297,704
effective search space: 11726015629536
effective search space used: 11726015629536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top