Clone Name | rbasd14f08 |
---|---|
Clone Library Name | barley_pub |
>gb|AY106376.1| Zea mays PCO106666 mRNA sequence Length = 903 Score = 278 bits (140), Expect = 2e-71 Identities = 225/254 (88%) Strand = Plus / Minus Query: 244 ttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattgttc 303 ||||||| ||||||||| | ||| || |||||||||||||| ||||| ||||| | ||| Sbjct: 606 ttcttgccacgcagcttcgttcccagggccctctcgagcttgccaatgatctgctggttg 547 Query: 304 ggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatctga 363 ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 546 ggaattgccttgcctgactcatactcctggatcacctgtggcttctcattgatcatctga 487 Query: 364 gcaagttgtgcctgggtcatcttcttatccagccttgcttgcataaggtttttcttcagg 423 ||||| ||||||||||||| ||||||||| |||||||||||||| || |||||||||||| Sbjct: 486 gcaagctgtgcctgggtcaacttcttatcgagccttgcttgcatgagatttttcttcagg 427 Query: 424 tcgcttgaaacacgctcatgggaaaggttctcagtgtcgncgtcnagccgcttggtgttg 483 || |||| ||| |||||||||| |||||||| |||||| |||| || |||||||||||| Sbjct: 426 tcacttggaactcgctcatgggcgaggttctctgtgtcgtcgtcgaggcgcttggtgttg 367 Query: 484 agggaagttccgct 497 ||||| || ||||| Sbjct: 366 agggatgtgccgct 353
>gb|BT018329.1| Zea mays clone EL01T0208G01.c mRNA sequence Length = 700 Score = 270 bits (136), Expect = 4e-69 Identities = 224/254 (88%) Strand = Plus / Minus Query: 244 ttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattgttc 303 ||||||| ||||||||| | ||| || |||||||||||||| ||||| ||||| | ||| Sbjct: 538 ttcttgccacgcagcttcgttcccagggccctctcgagcttgccaatgatctgctggttg 479 Query: 304 ggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatctga 363 ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 478 ggaattgccttgcctgactcatactcctggatcacctgtggcttctcattgatcatctga 419 Query: 364 gcaagttgtgcctgggtcatcttcttatccagccttgcttgcataaggtttttcttcagg 423 ||||| ||||||||||||| ||||||||| |||||||||||||| || |||||||||||| Sbjct: 418 gcaagctgtgcctgggtcaacttcttatcgagccttgcttgcatgagatttttcttcagg 359 Query: 424 tcgcttgaaacacgctcatgggaaaggttctcagtgtcgncgtcnagccgcttggtgttg 483 || |||| ||| |||||||||| |||||||| ||||| |||| || |||||||||||| Sbjct: 358 tcacttggaactcgctcatgggcgaggttctctgtgtcatcgtcgaggcgcttggtgttg 299 Query: 484 agggaagttccgct 497 ||||| || ||||| Sbjct: 298 agggatgtgccgct 285
>ref|XM_481988.1| Oryza sativa (japonica cultivar-group), mRNA Length = 815 Score = 264 bits (133), Expect = 3e-67 Identities = 221/251 (88%) Strand = Plus / Minus Query: 238 cattacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctga 297 ||||| ||||||| |||||||| | |||||| ||||| || ||||| || || ||||| Sbjct: 534 cattatttcttgccgcgcagctttgttccaagagccctttcaagcttcccgatgatctgc 475 Query: 298 ttgttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatc 357 | ||||||||| || || || ||||||||||||||||||||||| ||||||||||||||| Sbjct: 474 tggttcggaatagctttacctgactcgtactcctggatcacctggggcttctcattgatc 415 Query: 358 atctgagcaagttgtgcctgggtcatcttcttatccagccttgcttgcataaggtttttc 417 ||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 414 atctgtgcaagctgtgcctgggtcatcttcttgtccagccttgcttgcatgaggtttttc 355 Query: 418 ttcaggtcgcttgaaacacgctcatgggaaaggttctcagtgtcgncgtcnagccgcttg 477 |||||||| ||||| ||||||||||||| |||| |||| |||||| | || ||||||||| Sbjct: 354 ttcaggtcacttgagacacgctcatgggcaaggctctcggtgtcgtcatccagccgcttg 295 Query: 478 gtgttgaggga 488 ||||||||||| Sbjct: 294 gtgttgaggga 284
>dbj|AK061882.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F01, full insert sequence Length = 815 Score = 264 bits (133), Expect = 3e-67 Identities = 221/251 (88%) Strand = Plus / Minus Query: 238 cattacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctga 297 ||||| ||||||| |||||||| | |||||| ||||| || ||||| || || ||||| Sbjct: 534 cattatttcttgccgcgcagctttgttccaagagccctttcaagcttcccgatgatctgc 475 Query: 298 ttgttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatc 357 | ||||||||| || || || ||||||||||||||||||||||| ||||||||||||||| Sbjct: 474 tggttcggaatagctttacctgactcgtactcctggatcacctggggcttctcattgatc 415 Query: 358 atctgagcaagttgtgcctgggtcatcttcttatccagccttgcttgcataaggtttttc 417 ||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 414 atctgtgcaagctgtgcctgggtcatcttcttgtccagccttgcttgcatgaggtttttc 355 Query: 418 ttcaggtcgcttgaaacacgctcatgggaaaggttctcagtgtcgncgtcnagccgcttg 477 |||||||| ||||| ||||||||||||| |||| |||| |||||| | || ||||||||| Sbjct: 354 ttcaggtcacttgagacacgctcatgggcaaggctctcggtgtcgtcatccagccgcttg 295 Query: 478 gtgttgaggga 488 ||||||||||| Sbjct: 294 gtgttgaggga 284
>dbj|AK120339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060M10, full insert sequence Length = 823 Score = 264 bits (133), Expect = 3e-67 Identities = 221/251 (88%) Strand = Plus / Minus Query: 238 cattacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctga 297 ||||| ||||||| |||||||| | |||||| ||||| || ||||| || || ||||| Sbjct: 537 cattatttcttgccgcgcagctttgttccaagagccctttcaagcttcccgatgatctgc 478 Query: 298 ttgttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatc 357 | ||||||||| || || || ||||||||||||||||||||||| ||||||||||||||| Sbjct: 477 tggttcggaatagctttacctgactcgtactcctggatcacctggggcttctcattgatc 418 Query: 358 atctgagcaagttgtgcctgggtcatcttcttatccagccttgcttgcataaggtttttc 417 ||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 417 atctgtgcaagctgtgcctgggtcatcttcttgtccagccttgcttgcatgaggtttttc 358 Query: 418 ttcaggtcgcttgaaacacgctcatgggaaaggttctcagtgtcgncgtcnagccgcttg 477 |||||||| ||||| ||||||||||||| |||| |||| |||||| | || ||||||||| Sbjct: 357 ttcaggtcacttgagacacgctcatgggcaaggctctcggtgtcgtcatccagccgcttg 298 Query: 478 gtgttgaggga 488 ||||||||||| Sbjct: 297 gtgttgaggga 287
>dbj|AK120022.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C04, full insert sequence Length = 1727 Score = 264 bits (133), Expect = 3e-67 Identities = 221/251 (88%) Strand = Plus / Minus Query: 238 cattacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctga 297 ||||| ||||||| |||||||| | |||||| ||||| || ||||| || || ||||| Sbjct: 534 cattatttcttgccgcgcagctttgttccaagagccctttcaagcttcccgatgatctgc 475 Query: 298 ttgttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatc 357 | ||||||||| || || || ||||||||||||||||||||||| ||||||||||||||| Sbjct: 474 tggttcggaatagctttacctgactcgtactcctggatcacctggggcttctcattgatc 415 Query: 358 atctgagcaagttgtgcctgggtcatcttcttatccagccttgcttgcataaggtttttc 417 ||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 414 atctgtgcaagctgtgcctgggtcatcttcttgtccagccttgcttgcatgaggtttttc 355 Query: 418 ttcaggtcgcttgaaacacgctcatgggaaaggttctcagtgtcgncgtcnagccgcttg 477 |||||||| ||||| ||||||||||||| |||| |||| |||||| | || ||||||||| Sbjct: 354 ttcaggtcacttgagacacgctcatgggcaaggctctcggtgtcgtcatccagccgcttg 295 Query: 478 gtgttgaggga 488 ||||||||||| Sbjct: 294 gtgttgaggga 284
>gb|BT016361.1| Zea mays clone Contig194 mRNA sequence Length = 770 Score = 210 bits (106), Expect = 3e-51 Identities = 221/260 (85%) Strand = Plus / Minus Query: 244 ttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattgttc 303 ||||||| ||||| ||| | ||| || |||||||||||||| | ||| ||||| | ||| Sbjct: 539 ttcttgccacgcaacttggttcccagggccctctcgagcttgctaatgatctgctggttg 480 Query: 304 ggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatctga 363 || || |||||||| || || |||||||| |||||||||||||||||||| ||||||||| Sbjct: 479 gggattgccttgcctgattcatactcctgaatcacctgtggcttctcatttatcatctga 420 Query: 364 gcaagttgtgcctgggtcatcttcttatccagccttgcttgcataaggtttttcttcagg 423 |||||||||||||| |||| ||||||||| |||||||||||||| || || |||||||| Sbjct: 419 gcaagttgtgcctgtgtcagcttcttatcgagccttgcttgcatgagattcttcttcaga 360 Query: 424 tcgcttgaaacacgctcatgggaaaggttctcagtgtcgncgtcnagccgcttggtgttg 483 || |||| ||| |||||||||| ||||| || |||||| |||| || |||||||||||| Sbjct: 359 tcacttggaactcgctcatgggcgaggttttcggtgtcgtcgtcgaggcgcttggtgttg 300 Query: 484 agggaagttccgctagatgc 503 ||||| || ||||| ||||| Sbjct: 299 agggatgtaccgctggatgc 280
>gb|AY103611.1| Zea mays PCO106667 mRNA sequence Length = 964 Score = 210 bits (106), Expect = 3e-51 Identities = 221/260 (85%) Strand = Plus / Minus Query: 244 ttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattgttc 303 ||||||| ||||| ||| | ||| || |||||||||||||| | ||| ||||| | ||| Sbjct: 664 ttcttgccacgcaacttggttcccagggccctctcgagcttgctaatgatctgctggttg 605 Query: 304 ggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatctga 363 || || |||||||| || || |||||||| |||||||||||||||||||| ||||||||| Sbjct: 604 gggattgccttgcctgattcatactcctgaatcacctgtggcttctcatttatcatctga 545 Query: 364 gcaagttgtgcctgggtcatcttcttatccagccttgcttgcataaggtttttcttcagg 423 |||||||||||||| |||| ||||||||| |||||||||||||| || || |||||||| Sbjct: 544 gcaagttgtgcctgtgtcagcttcttatcgagccttgcttgcatgagattcttcttcaga 485 Query: 424 tcgcttgaaacacgctcatgggaaaggttctcagtgtcgncgtcnagccgcttggtgttg 483 || |||| ||| |||||||||| ||||| || |||||| |||| || |||||||||||| Sbjct: 484 tcacttggaactcgctcatgggcgaggttttcggtgtcgtcgtcgaggcgcttggtgttg 425 Query: 484 agggaagttccgctagatgc 503 ||||| || ||||| ||||| Sbjct: 424 agggatgtaccgctggatgc 405
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 117 bits (59), Expect = 4e-23 Identities = 74/79 (93%) Strand = Plus / Minus Query: 364 gcaagttgtgcctgggtcatcttcttatccagccttgcttgcataaggtttttcttcagg 423 ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 16977492 gcaagctgtgcctgggtcatcttcttgtccagccttgcttgcatgaggtttttcttcagg 16977433 Query: 424 tcgcttgaaacacgctcat 442 || ||||| |||||||||| Sbjct: 16977432 tcacttgagacacgctcat 16977414 Score = 105 bits (53), Expect = 1e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 238 cattacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctga 297 ||||| ||||||| |||||||| | |||||| ||||| || ||||| || || ||||| Sbjct: 16977731 cattatttcttgccgcgcagctttgttccaagagccctttcaagcttcccgatgatctgc 16977672 Query: 298 ttgttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatc 357 | ||||||||| || || || ||||||||||||||||||||||| ||||||||||||||| Sbjct: 16977671 tggttcggaatagctttacctgactcgtactcctggatcacctggggcttctcattgatc 16977612 Query: 358 atctg 362 ||||| Sbjct: 16977611 atctg 16977607 Score = 50.1 bits (25), Expect = 0.007 Identities = 44/51 (86%) Strand = Plus / Minus Query: 438 ctcatgggaaaggttctcagtgtcgncgtcnagccgcttggtgttgaggga 488 |||| ||| |||| |||| |||||| | || |||||||||||||||||||| Sbjct: 16975770 ctcacgggcaaggctctcggtgtcgtcatccagccgcttggtgttgaggga 16975720
>dbj|AP004663.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0410E02 Length = 144294 Score = 117 bits (59), Expect = 4e-23 Identities = 74/79 (93%) Strand = Plus / Minus Query: 364 gcaagttgtgcctgggtcatcttcttatccagccttgcttgcataaggtttttcttcagg 423 ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 13009 gcaagctgtgcctgggtcatcttcttgtccagccttgcttgcatgaggtttttcttcagg 12950 Query: 424 tcgcttgaaacacgctcat 442 || ||||| |||||||||| Sbjct: 12949 tcacttgagacacgctcat 12931 Score = 105 bits (53), Expect = 1e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 238 cattacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctga 297 ||||| ||||||| |||||||| | |||||| ||||| || ||||| || || ||||| Sbjct: 13248 cattatttcttgccgcgcagctttgttccaagagccctttcaagcttcccgatgatctgc 13189 Query: 298 ttgttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatc 357 | ||||||||| || || || ||||||||||||||||||||||| ||||||||||||||| Sbjct: 13188 tggttcggaatagctttacctgactcgtactcctggatcacctggggcttctcattgatc 13129 Query: 358 atctg 362 ||||| Sbjct: 13128 atctg 13124 Score = 50.1 bits (25), Expect = 0.007 Identities = 44/51 (86%) Strand = Plus / Minus Query: 438 ctcatgggaaaggttctcagtgtcgncgtcnagccgcttggtgttgaggga 488 |||| ||| |||| |||| |||||| | || |||||||||||||||||||| Sbjct: 11287 ctcacgggcaaggctctcggtgtcgtcatccagccgcttggtgttgaggga 11237
>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1484_G09 Length = 124695 Score = 117 bits (59), Expect = 4e-23 Identities = 74/79 (93%) Strand = Plus / Minus Query: 364 gcaagttgtgcctgggtcatcttcttatccagccttgcttgcataaggtttttcttcagg 423 ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 124503 gcaagctgtgcctgggtcatcttcttgtccagccttgcttgcatgaggtttttcttcagg 124444 Query: 424 tcgcttgaaacacgctcat 442 || ||||| |||||||||| Sbjct: 124443 tcacttgagacacgctcat 124425 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 300 gttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcat 359 ||||||||| || || || ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 124680 gttcggaatagctttacctgactcgtactcctggatcacctggggcttctcattgatcat 124621 Query: 360 ctg 362 ||| Sbjct: 124620 ctg 124618 Score = 50.1 bits (25), Expect = 0.007 Identities = 44/51 (86%) Strand = Plus / Minus Query: 438 ctcatgggaaaggttctcagtgtcgncgtcnagccgcttggtgttgaggga 488 |||| ||| |||| |||| |||||| | || |||||||||||||||||||| Sbjct: 122781 ctcacgggcaaggctctcggtgtcgtcatccagccgcttggtgttgaggga 122731
>gb|AY084597.1| Arabidopsis thaliana clone 112835 mRNA, complete sequence Length = 726 Score = 89.7 bits (45), Expect = 8e-15 Identities = 123/149 (82%) Strand = Plus / Minus Query: 241 tacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattg 300 |||||||| | ||| || ||||| |||||||||||||| |||||| || ||||| | Sbjct: 519 tacttctttccacggagtttagcaccaagtgccctctccagctttgaaaggatctgttga 460 Query: 301 ttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatc 360 |||||||| || || ||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 459 ttcggaattgctttccccgactcgtattcttggatcacttgtggcttctcattgatcaga 400 Query: 361 tgagcaagttgtgcctgggtcatcttctt 389 || |||||||| | ||| |||| |||||| Sbjct: 399 tgggcaagttgggactgagtcagcttctt 371
>gb|AC147741.11| Medicago truncatula clone mth2-17b23, complete sequence Length = 110572 Score = 87.7 bits (44), Expect = 3e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 316 cccgactcgtactcctggatcacctgtggcttctcattgatcatctgagcaagttgtgcc 375 ||||||||||||||||||||||| || ||||||||| |||| || ||||||||||||||| Sbjct: 37003 cccgactcgtactcctggatcacttgaggcttctcactgataatttgagcaagttgtgcc 36944 Query: 376 tgggtcatcttcttatccagccttgcttgcat 407 || || | |||||| |||| ||| | |||||| Sbjct: 36943 tgagtaagcttcttgtccatcctagtttgcat 36912
>ref|NM_115730.2| Arabidopsis thaliana DNA binding / transcription coactivator AT3G58680 mRNA, complete cds Length = 799 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 241 tacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattg 300 |||||||| | ||| || ||||| |||||||||||||| |||||| || ||||| | Sbjct: 519 tacttctttccacggagtttagcaccaagtgccctctccagctttgaaaggatctgttga 460 Query: 301 ttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatc 360 |||||||| || || || |||||||| || |||||||| ||||||||||||||||||| Sbjct: 459 ttcggaattgctttcccagactcgtattcttggatcacttgtggcttctcattgatcaga 400 Query: 361 tgagcaagttgtgcctgggtcatcttctt 389 || |||||||| | ||| |||| |||||| Sbjct: 399 tgggcaagttgggactgagtcagcttctt 371
>gb|AF339728.1| Arabidopsis thaliana putative transcriptional coactivator protein (At3g58680) mRNA, complete cds Length = 479 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 241 tacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattg 300 |||||||| | ||| || ||||| |||||||||||||| |||||| || ||||| | Sbjct: 428 tacttctttccacggagtttagcaccaagtgccctctccagctttgaaaggatctgttga 369 Query: 301 ttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatc 360 |||||||| || || || |||||||| || |||||||| ||||||||||||||||||| Sbjct: 368 ttcggaattgctttcccagactcgtattcttggatcacttgtggcttctcattgatcaga 309 Query: 361 tgagcaagttgtgcctgggtcatcttctt 389 || |||||||| | ||| |||| |||||| Sbjct: 308 tgggcaagttgggactgagtcagcttctt 280
>gb|AF326909.1| Arabidopsis thaliana putative transcriptional coactivator protein (At3g58680) mRNA, complete cds Length = 741 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 241 tacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattg 300 |||||||| | ||| || ||||| |||||||||||||| |||||| || ||||| | Sbjct: 519 tacttctttccacggagtttagcaccaagtgccctctccagctttgaaaggatctgttga 460 Query: 301 ttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatc 360 |||||||| || || || |||||||| || |||||||| ||||||||||||||||||| Sbjct: 459 ttcggaattgctttcccagactcgtattcttggatcacttgtggcttctcattgatcaga 400 Query: 361 tgagcaagttgtgcctgggtcatcttctt 389 || |||||||| | ||| |||| |||||| Sbjct: 399 tgggcaagttgggactgagtcagcttctt 371
>gb|AY081487.1| Arabidopsis thaliana transcriptional coactivator-like protein (At3g58680) mRNA, complete cds Length = 607 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 241 tacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattg 300 |||||||| | ||| || ||||| |||||||||||||| |||||| || ||||| | Sbjct: 428 tacttctttccacggagtttagcaccaagtgccctctccagctttgaaaggatctgttga 369 Query: 301 ttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatc 360 |||||||| || || || |||||||| || |||||||| ||||||||||||||||||| Sbjct: 368 ttcggaattgctttcccagactcgtattcttggatcacttgtggcttctcattgatcaga 309 Query: 361 tgagcaagttgtgcctgggtcatcttctt 389 || |||||||| | ||| |||| |||||| Sbjct: 308 tgggcaagttgggactgagtcagcttctt 280
>gb|AY042850.1| Arabidopsis thaliana transcriptional coactivator-like protein (T20N10_30) mRNA, complete cds Length = 724 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 241 tacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattg 300 |||||||| | ||| || ||||| |||||||||||||| |||||| || ||||| | Sbjct: 519 tacttctttccacggagtttagcaccaagtgccctctccagctttgaaaggatctgttga 460 Query: 301 ttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatc 360 |||||||| || || || |||||||| || |||||||| ||||||||||||||||||| Sbjct: 459 ttcggaattgctttcccagactcgtattcttggatcacttgtggcttctcattgatcaga 400 Query: 361 tgagcaagttgtgcctgggtcatcttctt 389 || |||||||| | ||| |||| |||||| Sbjct: 399 tgggcaagttgggactgagtcagcttctt 371
>gb|AF324717.2|AF324717 Arabidopsis thaliana AT3g58680 (AT3g58680/T20N10_30) mRNA, complete cds Length = 779 Score = 81.8 bits (41), Expect = 2e-12 Identities = 122/149 (81%) Strand = Plus / Minus Query: 241 tacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattg 300 |||||||| | ||| || ||||| |||||||||||||| |||||| || ||||| | Sbjct: 573 tacttctttccacggagtttagcaccaagtgccctctccagctttgaaaggatctgttga 514 Query: 301 ttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatc 360 |||||||| || || || |||||||| || |||||||| ||||||||||||||||||| Sbjct: 513 ttcggaattgctttcccagactcgtattcttggatcacttgtggcttctcattgatcaga 454 Query: 361 tgagcaagttgtgcctgggtcatcttctt 389 || |||||||| | ||| |||| |||||| Sbjct: 453 tgggcaagttgggactgagtcagcttctt 425
>dbj|AB072698.1| Nicotiana tabacum NtMBF1a mRNA for putative multiprotein bridging factor 1, complete cds Length = 703 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 304 ggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatcatctga 363 ||||||||||| || ||||| ||||||||||| | || ||||||||||| |||| ||| Sbjct: 423 ggaatcgcctttccagactcatactcctggatgatttgaggcttctcatttatcaactgg 364 Query: 364 gcaagttgtgcctgggtcatcttcttatc 392 |||||||| |||||||||| ||||||||| Sbjct: 363 gcaagttgagcctgggtcagcttcttatc 335
>emb|AL353032.1|ATT20N10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20N10 Length = 90273 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Minus Query: 241 tacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattg 300 |||||||| | ||| || ||||| |||||||||||||| |||||| || ||||| | Sbjct: 8479 tacttctttccacggagtttagcaccaagtgccctctccagctttgaaaggatctgttga 8420 Query: 301 ttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttctcattgatca 358 |||||||| || || || |||||||| || |||||||| ||||||||||||||||||| Sbjct: 8419 ttcggaattgctttcccagactcgtattcttggatcacttgtggcttctcattgatca 8362
>gb|AF232062.1|AF232062 Solanum tuberosum multiprotein bridging factor 1 mRNA, complete cds Length = 626 Score = 73.8 bits (37), Expect = 5e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 289 attatctgattgttcggaatcgccttgcccgactcgtactcctggatcacctgtggcttc 348 |||||||| | ||| ||||| ||||| ||||||||||| || ||||| | |||||||||| Sbjct: 394 attatctgttggtttggaattgcctttcccgactcgtattcttggataatctgtggcttc 335 Query: 349 tcattgatcatctgagcaagttgtgcctgggtcatcttctt 389 ||||| |||| ||||||||||| | ||| |||| |||||| Sbjct: 334 tcatttatcaattgagcaagttgagactgagtcagcttctt 294
>ref|NM_129829.2| Arabidopsis thaliana DNA binding / transcription coactivator AT2G42680 mRNA, complete cds Length = 692 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 313 ttgcccgactcgtactcctggatcacctgtggcttctcattgatcatctgagcaagttgt 372 ||||| ||||| ||||| || ||||| ||||||||||||||||| || ||||||||||| Sbjct: 425 ttgccagactcatactcttgaatcacttgtggcttctcattgatgatttgagcaagttgg 366 Query: 373 gcctgggtcatcttctt 389 | |||||| | |||||| Sbjct: 365 gactgggttagcttctt 349
>gb|AY063014.1| Arabidopsis thaliana unknown protein (At2g42680) mRNA, complete cds Length = 460 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 313 ttgcccgactcgtactcctggatcacctgtggcttctcattgatcatctgagcaagttgt 372 ||||| ||||| ||||| || ||||| ||||||||||||||||| || ||||||||||| Sbjct: 356 ttgccagactcatactcttgaatcacttgtggcttctcattgatgatttgagcaagttgg 297 Query: 373 gcctgggtcatcttctt 389 | |||||| | |||||| Sbjct: 296 gactgggttagcttctt 280
>gb|AF370280.1| Arabidopsis thaliana unknown protein (At2g42680) mRNA, complete cds Length = 703 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 313 ttgcccgactcgtactcctggatcacctgtggcttctcattgatcatctgagcaagttgt 372 ||||| ||||| ||||| || ||||| ||||||||||||||||| || ||||||||||| Sbjct: 420 ttgccagactcatactcttgaatcacttgtggcttctcattgatgatttgagcaagttgg 361 Query: 373 gcctgggtcatcttctt 389 | |||||| | |||||| Sbjct: 360 gactgggttagcttctt 344
>emb|BX819434.1|CNS0A8ZZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB77ZD12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 688 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 313 ttgcccgactcgtactcctggatcacctgtggcttctcattgatcatctgagcaagttgt 372 ||||| ||||| ||||| || ||||| ||||||||||||||||| || ||||||||||| Sbjct: 411 ttgccagactcatactcttgaatcacttgtggcttctcattgatgatttgagcaagttgg 352 Query: 373 gcctgggtcatcttctt 389 | |||||| | |||||| Sbjct: 351 gactgggttagcttctt 335
>gb|AY088140.1| Arabidopsis thaliana clone 41712 mRNA, complete sequence Length = 675 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 313 ttgcccgactcgtactcctggatcacctgtggcttctcattgatcatctgagcaagttgt 372 ||||| ||||| ||||| || ||||| ||||||||||||||||| || ||||||||||| Sbjct: 425 ttgccagactcatactcttgaatcacttgtggcttctcattgatgatttgagcaagttgg 366 Query: 373 gcctgggtcatcttctt 389 | |||||| | |||||| Sbjct: 365 gactgggttagcttctt 349
>emb|BX826065.1|CNS0A4ZW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL82ZF11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 671 Score = 61.9 bits (31), Expect = 2e-06 Identities = 98/119 (82%), Gaps = 1/119 (0%) Strand = Plus / Minus Query: 241 tacttcttgctacgcagcttagctccaagtgccctctcgagctttccaattatctgattg 300 |||||||| | ||| || ||||| |||||||||||||| |||||| || ||||| | Sbjct: 496 tacttctttccacggagtttagcaccaagtgccctctccagctttgaaaggatctgttga 437 Query: 301 ttcggaatcgccttgccc-gactcgtactcctggatcacctgtggcttctcattgatca 358 |||||||| || || | | |||||||| || |||||||| ||||||||||||||||||| Sbjct: 436 ttcggaattgctttccacagactcgtattcttggatcacttgtggcttctcattgatca 378
>emb|Z49698.1|RCJS21MR R.communis mRNA (unknown) Length = 674 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 325 tactcctggatcacctgtggcttctcattgatcatctgagcaagttgtgcctgggt 380 ||||| ||||| | ||| ||||| |||||||||||||||||||| || |||||||| Sbjct: 390 tactcttggattatctggggcttttcattgatcatctgagcaagctgagcctgggt 335
>gb|AC007087.7| Arabidopsis thaliana chromosome 2 clone F14N22 map mi551, complete sequence Length = 96685 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 313 ttgcccgactcgtactcctggatcacctgtggcttctcattgatcatct 361 ||||| ||||| ||||| || ||||| ||||||||||||||||| |||| Sbjct: 9784 ttgccagactcatactcttgaatcacttgtggcttctcattgatgatct 9832
>gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map m551, complete sequence Length = 115310 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 313 ttgcccgactcgtactcctggatcacctgtggcttctcattgatcatct 361 ||||| ||||| ||||| || ||||| ||||||||||||||||| |||| Sbjct: 105703 ttgccagactcatactcttgaatcacttgtggcttctcattgatgatct 105751
>gb|BC015500.1| Homo sapiens endothelial differentiation-related factor 1, transcript variant alpha, mRNA (cDNA clone MGC:9058 IMAGE:3903539), complete cds Length = 658 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 346 gatcacctgtggcttctcattgat 323
>ref|NM_153200.1| Homo sapiens endothelial differentiation-related factor 1 (EDF1), transcript variant beta, mRNA Length = 538 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 346 gatcacctgtggcttctcattgat 323
>ref|NM_003792.2| Homo sapiens endothelial differentiation-related factor 1 (EDF1), transcript variant alpha, mRNA Length = 658 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 346 gatcacctgtggcttctcattgat 323
>emb|AL355987.31| Human DNA sequence from clone RP11-216L13 on chromosome 9 Contains the 3' end of the gene for a novel protein similar to mouse pancreatitis-induced protein 49 (PIP49), the 5' end of a novel gene (FLJ30346), five novel genes (containing LOC158062, KIAA1984, FLJ35320, FLJ36901, FLJ30985, FLJ10101, FLJ37063 FLJ13045, FLJ40767), a nucleolin (NCL) pseudogene, the gene for a novel protein similar to mouse lipocalin 8 (EP17, Lcn5), a 13kD lysosomal H+ transporting ATPase V1 subunit G isoform 1 (ATP6V1G1) pseudogene, the gene for phosphohistidine phosphatase (PHP14), the gene for a novel protein similar to rat apical early endosomal glycoprotein (LOC252882), the EDF1 gene for endothelial differentiation-related factor 1 (MBF1, EDF-1), the 5' end of the TRAF2 gene for TNF receptor-associated factor 2 (TRAP, TRAP3) and ten CpG islands, complete sequence Length = 182003 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 141458 gatcacctgtggcttctcattgat 141481
>gb|BT009863.1| Homo sapiens endothelial differentiation-related factor 1 mRNA, complete cds Length = 447 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 318 gatcacctgtggcttctcattgat 295
>emb|CR541914.1| Homo sapiens full open reading frame cDNA clone RZPDo834G0633D for gene EDF1, endothelial differentiation-related factor 1; complete cds, without stopcodon Length = 444 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 318 gatcacctgtggcttctcattgat 295
>emb|AJ005259.1|HSAJ5259 Homo sapiens mRNA for EDF-1 protein Length = 981 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 352 gatcacctgtggcttctcattgat 329
>gb|AY888864.1| Synthetic construct Homo sapiens clone FLH109977.01X endothelial differentiation-related factor 1 (EDF1) mRNA, complete cds Length = 447 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 318 gatcacctgtggcttctcattgat 295
>gb|AY888863.1| Synthetic construct Homo sapiens clone FLH109976.01X endothelial differentiation-related factor 1 (EDF1) mRNA, complete cds Length = 447 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 318 gatcacctgtggcttctcattgat 295
>gb|AY888862.1| Synthetic construct Homo sapiens clone FLH109972.01X endothelial differentiation-related factor 1 (EDF1) mRNA, complete cds Length = 447 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 318 gatcacctgtggcttctcattgat 295
>dbj|AB002283.2| Homo sapiens mRNA for hMBF1beta, complete cds Length = 538 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 355 gatcacctgtggcttctcattgat 332
>gb|AY893963.1| Synthetic construct Homo sapiens clone FLH130861.01L endothelial differentiation-related factor 1 (EDF1) mRNA, partial cds Length = 447 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 318 gatcacctgtggcttctcattgat 295
>dbj|AB002282.1| Homo sapiens mRNA for hMBF1alpha, complete cds Length = 636 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 333 gatcacctgtggcttctcattgat 356 |||||||||||||||||||||||| Sbjct: 355 gatcacctgtggcttctcattgat 332
>emb|CR384085.5| Zebrafish DNA sequence from clone CH211-267K7 in linkage group 5, complete sequence Length = 140947 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 tgacaaacaagctttagaata 118 ||||||||||||||||||||| Sbjct: 74547 tgacaaacaagctttagaata 74567
>gb|AY509992.1| Malus x domestica cultivar Royal Gala sucrose phosphate phosphatase mRNA, complete cds Length = 1631 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 gggaaaggttctcagtgtcg 462 |||||||||||||||||||| Sbjct: 222 gggaaaggttctcagtgtcg 203
>gb|AC132314.3| Mus musculus BAC clone RP24-233C4 from chromosome 18, complete sequence Length = 156356 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 agcaaaagccagtaacaaaa 28 |||||||||||||||||||| Sbjct: 102122 agcaaaagccagtaacaaaa 102103
>emb|Z32679.1|CEC05B5 Caenorhabditis elegans Cosmid C05B5, complete sequence Length = 30320 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 160 attcagtatcaaccaacaggaacagcct 187 ||||||||||| |||||| ||||||||| Sbjct: 16368 attcagtatcagccaacatgaacagcct 16395
>gb|AC004921.2| Homo sapiens PAC clone RP5-899E9 from 7, complete sequence Length = 150332 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 cttgcataaggtttttcttc 420 |||||||||||||||||||| Sbjct: 126454 cttgcataaggtttttcttc 126435
>gb|AC133540.2| Homo sapiens chromosome 16 clone LA16c-352F7, complete sequence Length = 40695 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 cttgcataaggtttttcttc 420 |||||||||||||||||||| Sbjct: 2479 cttgcataaggtttttcttc 2498
>gb|AC115870.18| Mus musculus chromosome 1, clone RP24-339L17, complete sequence Length = 186963 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 agccgcttggtgttgaggga 488 |||||||||||||||||||| Sbjct: 44273 agccgcttggtgttgaggga 44292
>emb|AL691470.17| Mouse DNA sequence from clone RP23-160F12 on chromosome 11 Contains the 3' end of gene FLJ13305, a novel gene, a novel gene (1700061J23Rik) and a CpG island, complete sequence Length = 195614 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaagccagtaacaaaacac 31 |||||||||||||||||||| Sbjct: 110651 aaaagccagtaacaaaacac 110670
>gb|DQ397548.1| Cenarchaeum symbiosum clone C04G08, complete sequence Length = 46706 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 gtatcaaccaacaggaacag 184 |||||||||||||||||||| Sbjct: 45414 gtatcaaccaacaggaacag 45395
>gb|AC092377.3| Homo sapiens chromosome 16 clone RP11-680G10, complete sequence Length = 207283 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 cttgcataaggtttttcttc 420 |||||||||||||||||||| Sbjct: 8402 cttgcataaggtttttcttc 8383
>ref|NM_001025972.1| Caenorhabditis elegans C05B5.9 (C05B5.9) mRNA, complete cds Length = 598 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 160 attcagtatcaaccaacaggaacagcct 187 ||||||||||| |||||| ||||||||| Sbjct: 242 attcagtatcagccaacatgaacagcct 269
>emb|AL929242.16| Mouse DNA sequence from clone RP23-78D16 on chromosome 2, complete sequence Length = 217352 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 catggttattcagtatcaac 172 |||||||||||||||||||| Sbjct: 135410 catggttattcagtatcaac 135391
>gb|L05438.1|MUSIGFBP03 Mouse insulin-like growth factor binding protein 2 (IGFBP-2) gene, exon 3 Length = 425 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 agccgcttggtgttgaggga 488 |||||||||||||||||||| Sbjct: 121 agccgcttggtgttgaggga 140 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,738,017 Number of Sequences: 3902068 Number of extensions: 3738017 Number of successful extensions: 63953 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63844 Number of HSP's gapped (non-prelim): 101 length of query: 506 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 484 effective length of database: 17,147,199,772 effective search space: 8299244689648 effective search space used: 8299244689648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)