ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13p23 |
|---|---|
| Clone Library Name | barley_pub |
>RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif protein 5)| (Putative tumor suppressor LUCA15) (G15 protein) (NY-REN-9 antigen) Length = 815 Score = 61.2 bits (147), Expect = 1e-09 Identities = 36/90 (40%), Positives = 50/90 (55%) Frame = -3 Query: 431 TXNYEVITADRXIXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQ 252 T NYE T D I +N+GN++L+ MGW+EG GLG+ GI P++A+ GLG++ Sbjct: 730 TVNYEQPTKD-GIDHSNIGNKMLQAMGWREGSGLGRKCQGITAPIEAQVRLKGAGLGAKG 788 Query: 251 KRADPSXEARAGDSYXTIIQKKAIARFREM 162 S DSY ++K ARF EM Sbjct: 789 SAYGLS----GADSYKDAVRKAMFARFTEM 814
>GPTC2_HUMAN (Q9NW75) G patch domain-containing protein 2| Length = 528 Score = 60.8 bits (146), Expect = 2e-09 Identities = 27/45 (60%), Positives = 32/45 (71%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 I ENN+GNR+L+NMGW G GLG+DG GI EP+QA GLG Sbjct: 465 ILENNIGNRMLQNMGWTPGSGLGRDGKGISEPIQAMQRPKGLGLG 509
>GPTC2_MOUSE (Q7TQC7) G patch domain-containing protein 2| Length = 527 Score = 59.3 bits (142), Expect = 5e-09 Identities = 28/57 (49%), Positives = 37/57 (64%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRADPSXEA 225 I E+N+GNR+L++MGW G GLG+DG GI EPVQA GLG ++ P+ A Sbjct: 464 ILESNIGNRMLQSMGWTPGSGLGRDGRGIAEPVQAVQRPKGLGLGFPLPKSSPTSPA 520
>NKRF_MOUSE (Q8BY02) NF-kappa-B-repressing factor (NFKB-repressing factor)| (Transcription factor NRF) Length = 690 Score = 55.1 bits (131), Expect = 9e-08 Identities = 26/52 (50%), Positives = 34/52 (65%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRAD 240 I E+N+GN++LR MGW G GLGK G GI+EP+ K R GLG +R + Sbjct: 549 IKEDNIGNQLLRKMGWTGG-GLGKSGEGIREPISVKEQHKREGLGLDVERVN 599
>NKRF_HUMAN (O15226) NF-kappa-B-repressing factor (NFKB-repressing factor)| (Transcription factor NRF) (ITBA4 protein) Length = 690 Score = 55.1 bits (131), Expect = 9e-08 Identities = 26/52 (50%), Positives = 34/52 (65%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRAD 240 I E+N+GN++LR MGW G GLGK G GI+EP+ K R GLG +R + Sbjct: 549 IKEDNIGNQLLRKMGWTGG-GLGKSGEGIREPISVKEQHKREGLGLDVERVN 599
>RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif protein 10) (S1-1| protein) Length = 852 Score = 51.6 bits (122), Expect = 9e-07 Identities = 29/87 (33%), Positives = 48/87 (55%) Frame = -3 Query: 425 NYEVITADRXIXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKR 246 ++E T D + +N+G+R+L+ MGW+EG GLG+ GI P++A+ GLG++ Sbjct: 769 DFEQPTRD-GLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGAR--- 824 Query: 245 ADPSXEARAGDSYXTIIQKKAIARFRE 165 S + +SY + K + RF E Sbjct: 825 -GSSYGVTSTESYKETLHKTMVTRFNE 850
>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)| (DXS8237E) Length = 929 Score = 51.6 bits (122), Expect = 9e-07 Identities = 29/87 (33%), Positives = 48/87 (55%) Frame = -3 Query: 425 NYEVITADRXIXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKR 246 ++E T D + +N+G+R+L+ MGW+EG GLG+ GI P++A+ GLG++ Sbjct: 846 DFEQPTRD-GLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGAR--- 901 Query: 245 ADPSXEARAGDSYXTIIQKKAIARFRE 165 S + +SY + K + RF E Sbjct: 902 -GSSYGVTSTESYKETLHKTMVTRFNE 927
>AGGF1_HUMAN (Q8N302) Angiogenic factor with G patch and FHA domains 1| (Angiogenic factor VG5Q) (Vasculogenesis gene on 5q) (hVG5Q) Length = 714 Score = 50.8 bits (120), Expect = 2e-06 Identities = 21/46 (45%), Positives = 31/46 (67%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGS 258 I ++N G ++L MGW++G GLGKDG G+K P+Q + GLG+ Sbjct: 617 ITDSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGLGT 662
>AGGF1_MOUSE (Q7TN31) Angiogenic factor with G patch and FHA domains 1| (Angiogenic factor VG5Q) (mVG5Q) Length = 711 Score = 50.4 bits (119), Expect = 2e-06 Identities = 21/46 (45%), Positives = 30/46 (65%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGS 258 I ++N G ++L MGW+ G GLGKDG G+K P+Q + GLG+ Sbjct: 614 ITDSNKGRKMLEKMGWKRGEGLGKDGGGMKTPIQLQLRRTHAGLGT 659
>SFR14_HUMAN (Q8IX01) Putative splicing factor, arginine/serine-rich 14| (Arginine/serine-rich splicing factor 14) Length = 1082 Score = 46.6 bits (109), Expect = 3e-05 Identities = 21/50 (42%), Positives = 31/50 (62%) Frame = -3 Query: 407 ADRXIXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGS 258 A + + + N+G ++L+ MGW+EG GLG G GI+EPV GLG+ Sbjct: 1005 AQQKLTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGA 1054
>SFR14_MOUSE (Q8CH09) Putative splicing factor, arginine/serine-rich 14| (Arginine/serine-rich splicing factor 14) Length = 1067 Score = 45.8 bits (107), Expect = 5e-05 Identities = 21/50 (42%), Positives = 31/50 (62%) Frame = -3 Query: 407 ADRXIXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGS 258 + + + + NVG ++L+ MGW+EG GLG G GI+EPV GLG+ Sbjct: 990 SQQKLTDKNVGFQMLQKMGWKEGHGLGSLGKGIREPVSVGALSEGEGLGA 1039
>SF04_RAT (Q68FU8) Splicing factor 4| Length = 644 Score = 44.7 bits (104), Expect = 1e-04 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -3 Query: 383 NVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRADPSXEARAGDSYX 204 N+G ++L MGW+EG GLG +G GIK PV K G G R P+ ++ D Y Sbjct: 563 NIGYQMLMKMGWKEGEGLGTEGQGIKNPVN-KGATTIDGAGFGIDR--PAELSKEDDEYE 619 Query: 203 TIIQKKAIA-RFR 168 ++ +A RFR Sbjct: 620 AFRKRMMLAYRFR 632
>SF04_MOUSE (Q8CH02) Splicing factor 4| Length = 643 Score = 44.7 bits (104), Expect = 1e-04 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -3 Query: 383 NVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRADPSXEARAGDSYX 204 N+G ++L MGW+EG GLG +G GIK PV K G G R P+ ++ D Y Sbjct: 562 NIGYQMLMKMGWKEGEGLGTEGQGIKNPVN-KGATTIDGAGFGIDR--PAELSKEDDEYE 618 Query: 203 TIIQKKAIA-RFR 168 ++ +A RFR Sbjct: 619 AFRKRMMLAYRFR 631
>SF04_HUMAN (Q8IWZ8) Splicing factor 4 (RNA-binding protein RBP)| Length = 645 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Frame = -3 Query: 383 NVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDV-RXGLGSQQKRADPSXEARAGDSY 207 N+G ++L MGW+EG GLG +G GIK PV V G G + P+ ++ D Y Sbjct: 564 NIGYQMLMKMGWKEGEGLGSEGQGIKNPVNKGTTTVDGAGFGIDR----PAELSKEDDEY 619 Query: 206 XTIIQKKAIA-RFR 168 ++ +A RFR Sbjct: 620 EAFRKRMMLAYRFR 633
>SPP2_USTMA (Q4P9X4) Pre-mRNA-splicing factor SPP2| Length = 417 Score = 42.0 bits (97), Expect = 7e-04 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = -3 Query: 377 GNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRADP 237 G +LR MGW+EG+G GK G G ++ + + GLG++++ P Sbjct: 231 GMALLRGMGWKEGMGAGKGGKGPQQAAEPRKRAALLGLGAKERPTGP 277
>SF04_ARATH (Q94C11) Splicing factor 4-like protein (SF4-like protein)| Length = 443 Score = 42.0 bits (97), Expect = 7e-04 Identities = 18/41 (43%), Positives = 28/41 (68%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVR 273 I +NVG+++L MGW+EG G+G G+ +P+ A GDV+ Sbjct: 358 IQADNVGHKLLSKMGWKEGEGIGSSRKGMADPIMA--GDVK 396
>YNW4_YEAST (P53866) Hypothetical 86.9 kDa protein in URE2-SSU72 intergenic| region Length = 767 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGS-GIKEPVQAKPGDVRXGL 264 I N+G R+L +GW+ G GLG G+ GI EP+ AK R GL Sbjct: 718 IGNENIGRRMLEKLGWKSGEGLGIQGNKGISEPIFAKIKKNRSGL 762
>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast| precursor Length = 387 Score = 40.0 bits (92), Expect = 0.003 Identities = 17/36 (47%), Positives = 23/36 (63%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGL 264 R++ MGW++G GLGK GI P+ AK D R G+ Sbjct: 220 RMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGV 255
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 39.3 bits (90), Expect = 0.005 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = -3 Query: 380 VGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRA 243 +G ++R MGW+EG GLGK+ G KEP+ R GL + +RA Sbjct: 2308 MGAVLMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGLVAVGERA 2353
>SON_MOUSE (Q9QX47) SON protein| Length = 2404 Score = 39.3 bits (90), Expect = 0.005 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = -3 Query: 380 VGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRA 243 +G ++R MGW+EG GLGK+ G KEP+ R GL + +RA Sbjct: 2286 MGAVLMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGLVAVGERA 2331
>VPK9_HUMAN (P63124) HERV-K_5q13.3 provirus ancestral Pro protein (EC 3.4.23.-)| (HERV-K104 Pro protein) (Protease) (Proteinase) (PR) Length = 156 Score = 38.5 bits (88), Expect = 0.008 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 +I+ MG+ G GLGK+ GIK PV+AK R G+G Sbjct: 117 KIMTKMGYIPGKGLGKNEDGIKVPVEAKINQKREGIG 153
>VPK5_HUMAN (P63121) HERV-K_19p13.11 provirus ancestral Pro protein (EC| 3.4.23.-) (HERV-K113 envelope protein) (Protease) (Proteinase) (PR) Length = 156 Score = 38.5 bits (88), Expect = 0.008 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 +I+ MG+ G GLGK+ GIK PV+AK R G+G Sbjct: 117 KIMTKMGYIPGKGLGKNEDGIKVPVEAKINQEREGIG 153
>VPK2_HUMAN (Q9Y6I0) HERV-K_7p22.1 provirus ancestral Pro protein (EC 3.4.23.-)| (HERV-K(HML-2.HOM) Pro protein) (HERV-K108 Pro protein) (HERV-K(C7) Pro protein) (Protease) (Proteinase) (PR) Length = 156 Score = 38.5 bits (88), Expect = 0.008 Identities = 18/38 (47%), Positives = 25/38 (65%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGS 258 +I+ MG+ G GLGK+ GIK PV+AK R G+G+ Sbjct: 117 KIMTKMGYIPGKGLGKNEDGIKIPVEAKINQEREGIGN 154
>VPK1_HUMAN (P63119) HERV-K_12q14.1 provirus ancestral Pro protein (EC| 3.4.23.-) (Protease) (Proteinase) (PR) Length = 156 Score = 38.5 bits (88), Expect = 0.008 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 +I+ MG+ G GLGK+ GIK PV+AK R G+G Sbjct: 117 KIMTKMGYIPGKGLGKNEDGIKVPVEAKINQKREGIG 153
>VPK12_HUMAN (P63131) HERV-K_1q22 provirus ancestral Pro protein (EC 3.4.23.-)| (HERV-K102 Pro protein) (HERV-K(III) Pro protein) (Protease) (Proteinase) (PR) Length = 156 Score = 38.5 bits (88), Expect = 0.008 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 +I+ MG+ G GLGK+ GIK PV+AK R G+G Sbjct: 117 KIMTKMGYIPGKGLGKNEDGIKVPVEAKINQEREGIG 153
>VPK10_HUMAN (P10265) HERV-K_5q33.3 provirus ancestral Pro protein (EC 3.4.23.-)| (HERV-K10 Pro protein) (HERV-K107 Pro protein) (Protease) (Proteinase) (PR) Length = 156 Score = 38.5 bits (88), Expect = 0.008 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 +I+ MG+ G GLGK+ GIK PV+AK R G+G Sbjct: 117 KIMTKMGYIPGKGLGKNEDGIKVPVEAKINQEREGIG 153
>VPK17_HUMAN (P63125) HERV-K_11q22.1 provirus ancestral Pro protein (EC| 3.4.23.-) (Protease) (Proteinase) (PR) Length = 156 Score = 38.1 bits (87), Expect = 0.011 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 +I+ MG+ G GLGK+ GIK PV+AK R G+G Sbjct: 117 KIMTKMGYIPGKGLGKNEDGIKIPVEAKINQKREGIG 153
>VPK3_HUMAN (P63120) HERV-K_19q12 provirus ancestral Pro protein (EC 3.4.23.-)| (HERV-K(C19) Pro protein) (Protease) (Proteinase) (PR) Length = 156 Score = 37.4 bits (85), Expect = 0.018 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 +I+ MG+ G GLGK+ GIK PV+AK R G+G Sbjct: 117 KIMTKMGYILGKGLGKNEDGIKIPVEAKINQKREGIG 153
>PINX1_MOUSE (Q9CZX5) Pin2-interacting protein X1 (TRF1-interacting protein 1)| (Liver-related putative tumor suppressor) (LPTS1) (67-11-3 protein) Length = 332 Score = 37.4 bits (85), Expect = 0.018 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -3 Query: 389 ENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRAD 240 ++ G ++L MGW +G GLG G E ++ K + GLG+ D Sbjct: 26 DSKFGQKMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNHLGLGATNNNED 75
>TFP11_HUMAN (Q9UBB9) Tuftelin-interacting protein 11| Length = 837 Score = 37.0 bits (84), Expect = 0.024 Identities = 15/41 (36%), Positives = 26/41 (63%) Frame = -3 Query: 380 VGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGS 258 +G ++L+ MG+ G GLGK+ GI P++AK + +G+ Sbjct: 152 IGQKLLQKMGYVPGRGLGKNAQGIINPIEAKQRKGKGAVGA 192
>TFP11_MOUSE (Q9ERA6) Tuftelin-interacting protein 11 (Tuftelin-interacting| protein 39) Length = 838 Score = 37.0 bits (84), Expect = 0.024 Identities = 15/41 (36%), Positives = 26/41 (63%) Frame = -3 Query: 380 VGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGS 258 +G ++L+ MG+ G GLGK+ GI P++AK + +G+ Sbjct: 153 IGQKLLQKMGYVPGRGLGKNAQGIINPIEAKQRKGKGAVGA 193
>VPK7_HUMAN (P63123) HERV-K_1q23.3 provirus ancestral Pro protein (EC 3.4.23.-)| (HERV-K18 Pro protein) (HERV-K110 Pro protein) (HERV-K(C1a) Pro protein) (Protease) (Proteinase) (PR) Length = 156 Score = 36.6 bits (83), Expect = 0.031 Identities = 17/40 (42%), Positives = 24/40 (60%) Frame = -3 Query: 380 VGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 + +I+ MG+ G GLGK+ GIK P++AK R G G Sbjct: 114 MSQKIMTKMGYIPGKGLGKNEDGIKVPIEAKINHGREGTG 153
>VPK11_HUMAN (P63129) HERV-K_22q11.21 provirus ancestral Pro protein (EC| 3.4.23.-) (HERV-K101 envelope protein) (Protease) (Proteinase) (PR) Length = 156 Score = 36.2 bits (82), Expect = 0.041 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 +I+ MG+ G GLGK+ GIK P +AK R G+G Sbjct: 117 KIMTKMGYIPGKGLGKNEDGIKIPFEAKINQKREGIG 153
>BAT4_CAEEL (Q09655) Protein BAT4 homolog| Length = 371 Score = 35.4 bits (80), Expect = 0.070 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQ 252 I +N+G R++ GW E GLG++ G + P++ R GLG+++ Sbjct: 261 IGPSNIGYRLMCASGWTEEQGLGRNSDGQRFPIRTILKRNRAGLGAEK 308
>PINX1_HUMAN (Q96BK5) Pin2-interacting protein X1 (TRF1-interacting protein 1)| (Liver-related putative tumor suppressor) (67-11-3 protein) Length = 328 Score = 34.7 bits (78), Expect = 0.12 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -3 Query: 389 ENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRAD 240 ++ G R+L MGW +G GLG G + ++ + + GLG+ D Sbjct: 26 DSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGATINNED 75
>VPK6_HUMAN (P63122) HERV-K_8p23.1 provirus ancestral Pro protein (EC 3.4.23.-)| (HERV-K115 Pro protein) (Protease) (Proteinase) (PR) Length = 156 Score = 33.9 bits (76), Expect = 0.20 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 +I+ G+ G GLGK+ GIK P +AK R G+G Sbjct: 117 KIMTKRGYIPGKGLGKNEDGIKIPFEAKINQKREGIG 153
>VPK4_HUMAN (P63127) HERV-K_6q14.1 provirus ancestral Pro protein (EC 3.4.23.-)| (HERV-K109 Pro protein) (HERV-K(C6) Pro protein) (Protease) (Proteinase) (PR) Length = 156 Score = 33.9 bits (76), Expect = 0.20 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -3 Query: 371 RILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 +I+ G+ G GLGK+ GIK P +AK R G+G Sbjct: 117 KIMTKRGYIPGKGLGKNEDGIKIPFEAKINQKREGIG 153
>ZGPAT_HUMAN (Q8N5A5) Zinc finger CCCH-type with G patch domain protein (Zinc| finger CCCH-type domain-containing protein 9) Length = 531 Score = 33.1 bits (74), Expect = 0.35 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQA 291 + +G+R+L MG++ G GLG+ G EP+ A Sbjct: 331 VHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHA 365
>YAB4_SCHPO (Q09806) Hypothetical protein C2G11.04 in chromosome I| Length = 301 Score = 33.1 bits (74), Expect = 0.35 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 389 ENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAK 288 + NV ++L+ GW+EG GLG+ GI P+ + Sbjct: 252 KENVALKMLQRCGWKEGQGLGQHNQGIINPLHVE 285
>GPTC3_MOUSE (Q8BIY1) G patch domain-containing protein 3| Length = 525 Score = 32.7 bits (73), Expect = 0.45 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Frame = -3 Query: 380 VGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGD-----VRXGLGSQQKRADP 237 +G +++ GW EG GLG SG+ E A GD + GLG ++ P Sbjct: 414 IGRKVMERQGWAEGQGLGSRCSGVPE---ALDGDGQHPRCKRGLGYHGEKLQP 463
>BAT4_DROME (Q9V7A7) Protein BAT4 homolog| Length = 336 Score = 32.7 bits (73), Expect = 0.45 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRA 243 I N G +++ GW + GLG SG PV+ R GLG +Q+ A Sbjct: 238 ISAKNRGLQLMVKQGWDQEHGLGPSQSGRLYPVKTVLRKQRTGLGIEQQSA 288
>YG5W_YEAST (P53335) Hypothetical 31.3 kDa protein in TAF145-YOR1 intergenic| region Length = 271 Score = 32.3 bits (72), Expect = 0.59 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = -3 Query: 377 GNRILRNMGWQEGLGLG-----KDGSGIKEPVQAKPGDVRXGLGSQQKRADPSXEARAGD 213 G++ L GW+ G+GLG + S IK ++ D GLG++ KR D E G+ Sbjct: 29 GHQFLEKFGWKPGMGLGLSPMNSNTSHIKVSIK----DDNVGLGAKLKRKDKKDEFDNGE 84 Query: 212 SYXTIIQKKAIAR 174 + ++ + R Sbjct: 85 CAGLDVFQRILGR 97
>VPRT_SMRVH (P21407) Protease (EC 3.4.23.-)| Length = 323 Score = 32.3 bits (72), Expect = 0.59 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -3 Query: 359 NMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQ 252 + G+ G GLGK+ GI +P+ P + GLG Q Sbjct: 285 SQGYLPGQGLGKNNQGITQPITITPKKDKTGLGFHQ 320
>GPTC3_HUMAN (Q96I76) G patch domain-containing protein 3| Length = 525 Score = 32.0 bits (71), Expect = 0.78 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = -3 Query: 380 VGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVR--XGLGSQQKRADP 237 +G +++ GW EG GLG SG+ E + + R GLG ++ P Sbjct: 413 IGRKVMERQGWAEGQGLGCRCSGVPEALDSDGQHPRCKRGLGYHGEKLQP 462
>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC| 2.7.11.1) (Transcription initiation factor TFIID 230 kDa subunit) (TAFII-230) (TAFII250) (TBP-associated factor 230 kDa) (p230) Length = 2129 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = -3 Query: 374 NRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRADPSXEARA 219 N I R+MG + G +++P PG+V+ G G +K+ DP E ++ Sbjct: 1759 NSIHRSMGAEAGSS--HTAPAVRKPAPPGPGEVKRGRGRPRKQRDPVEEVKS 1808
>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 827 Score = 31.6 bits (70), Expect = 1.0 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -3 Query: 368 ILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 I+ MG++EG GLG G EP+ R GLG Sbjct: 790 IMAKMGYKEGKGLGHQEQGRIEPISPNGNQDRQGLG 825
>ZGPAT_MOUSE (Q8VDM1) Zinc finger CCCH-type with G patch domain protein| Length = 511 Score = 31.2 bits (69), Expect = 1.3 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQA 291 + +G+++L MG++ G GLG+ G EP+ A Sbjct: 311 VHTRGIGSKLLVKMGYEFGKGLGRHAEGRVEPIHA 345
>STS5_SCHPO (O74454) Protein sts5| Length = 1066 Score = 31.2 bits (69), Expect = 1.3 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 9/52 (17%) Frame = +1 Query: 19 ITPRNM-ELARQKGNLTVQMQALGV------LT--LTPMKRVAELIIHDEIK 147 +TPR + E+ + KGNL QM +LG+ LT P++R ++++H +++ Sbjct: 879 VTPRAVYEMQKYKGNLASQMMSLGIEDESDDLTHFTAPLERYGDIVVHYQLQ 930
>BAT4_MOUSE (Q61858) Protein BAT4 (HLA-B-associated transcript 4) (G5 protein)| Length = 372 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 377 GNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 G R+L GW+ G+GLG G G P+ + GLG Sbjct: 275 GFRLLLRGGWEPGMGLGPRGEGRANPIPTILKRDQEGLG 313
>SPP2_EMENI (Q5B4R9) Pre-mRNA-splicing factor spp2| Length = 523 Score = 30.8 bits (68), Expect = 1.7 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -3 Query: 377 GNRILRNMGWQEGLGLGKDGSGIKEPVQA 291 G +LR MGW+EG +GK G +P +A Sbjct: 261 GAALLRGMGWKEGQAVGKGKYGSADPSRA 289
>CEZ1_HUMAN (Q6GQQ9) Zinc finger A20 domain-containing protein 1 (EC 3.-.-.-)| (Cellular zinc finger anti-NF-kappa B protein) (Zinc finger protein Cezanne) Length = 843 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 238 GSALFC*LPRPXLTSPGLACTGSLMPLPSFPRPSPSCQPMLRRIRLPTL 384 G + C PR L G C G L P +FPR P +P + +P+L Sbjct: 703 GGGVHCQEPRRQLA--GGPCVGGLPPYATFPRQCPPGRPYPHQDSIPSL 749
>BAT4_HUMAN (O95872) Protein BAT4 (HLA-B-associated transcript 4) (G5 protein)| Length = 356 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 377 GNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLG 261 G ++L GW+ G+GLG G G P+ + GLG Sbjct: 259 GFKLLLRGGWEPGMGLGPRGEGRANPIPTVLKRDQEGLG 297
>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 405 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = -3 Query: 380 VGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXG---LGSQQKRADPSXEARAGDS 210 V ++I++ G++EG GLGK G+ + + R G +G ++ + ++ DS Sbjct: 238 VAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKGEAQDASKKSDS 297
>RBM6_HUMAN (P78332) RNA-binding protein 6 (RNA-binding motif protein 6)| (RNA-binding protein DEF-3) (Lung cancer antigen NY-LU-12) (Protein G16) Length = 1123 Score = 29.6 bits (65), Expect = 3.8 Identities = 17/78 (21%), Positives = 40/78 (51%) Frame = -3 Query: 395 IXENNVGNRILRNMGWQEGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRADPSXEARAG 216 I ++ G + + GW++G GLG G+ +A+ G +R G + + + ++ Sbjct: 1049 IDTSSKGGCVQQATGWRKGTGLGYGHPGLASSEEAE-GRMR---GPSVGASGRTSKRQSN 1104 Query: 215 DSYXTIIQKKAIARFREM 162 ++Y +++ AR++E+ Sbjct: 1105 ETYRDAVRRVMFARYKEL 1122
>ACTHR_PIG (Q8HYN8) Adrenocorticotropic hormone receptor (ACTH receptor)| (ACTH-R) (Melanocortin receptor 2) (MC2-R) (Adrenocorticotropin receptor) Length = 297 Score = 29.3 bits (64), Expect = 5.0 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 9/79 (11%) Frame = -3 Query: 236 SXEARAGDSYXTI---IQKKAIARFREMS*VLLFISSCIISSATRFIGVNVKTPKACICT 66 S A A D Y TI +Q + + R + VLL I +C I S + + P T Sbjct: 120 SLSAIAADRYITIFHALQYQRLVTPRRAAVVLLIIWACCIGSGITIVTFSHHVPAVIAFT 179 Query: 65 VKFP------FCLASSIFL 27 FP CL +FL Sbjct: 180 ALFPLMLVFILCLYGHMFL 198
>TRPB1_CHLCV (Q822W9) Tryptophan synthase beta chain 1 (EC 4.2.1.20)| Length = 412 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/43 (30%), Positives = 26/43 (60%) Frame = +3 Query: 306 LDATTILSKTQSFLPAHVAQNTIAHIVFXYXSVSSDHLIIXSV 434 L+A +LSKT+ +PA + + +AH++ S+ D + I ++ Sbjct: 349 LEAFRLLSKTEGIIPALESSHALAHMIKIAPSLDKDTIAIVNL 391
>ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)| Length = 1687 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/58 (29%), Positives = 26/58 (44%) Frame = -3 Query: 344 EGLGLGKDGSGIKEPVQAKPGDVRXGLGSQQKRADPSXEARAGDSYXTIIQKKAIARF 171 EG G+ G G + Q +P G + S E+ +GD ++QK+ ARF Sbjct: 1047 EGCRGGRGGGGKRGTPQTQPDVSPLSNGDSAPPKNGSTESSSGDGDTVLVQKQKGARF 1104
>KLF3_MOUSE (Q60980) Krueppel-like factor 3 (Basic krueppel-like factor)| (CACCC-box-binding protein BKLF) (TEF-2) Length = 344 Score = 28.9 bits (63), Expect = 6.6 Identities = 18/59 (30%), Positives = 26/59 (44%) Frame = +1 Query: 214 SPARASXDGSALFC*LPRPXLTSPGLACTGSLMPLPSFPRPSPSCQPMLRRIRLPTLFS 390 SP A S+L P SPGL+ S P+ + PSP QP + +P + + Sbjct: 71 SPPAAGGSPSSLK--FPSHRRASPGLSMPSSSPPIKKYSPPSPGVQPFGVPLSMPPVMA 127
>PS1C2_PANTR (Q7YR45) Psoriasis susceptibility 1 candidate gene 2 protein| homolog precursor (SPR1 protein) Length = 136 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/60 (31%), Positives = 24/60 (40%) Frame = +2 Query: 164 SP*ILQLPSSGLWXYSCRRLGPPXMDRLSSADYQGXLSHRQAWPAPAP*CHYHPFQDPVL 343 SP LP +G+W R PP R G WP PAP + P ++P L Sbjct: 70 SPPWRDLPETGVWPPEPPRTDPPQPPRPDDPWPAGPQPPENPWP-PAPEVDHRPQEEPDL 128
>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) (Fragment) Length = 1048 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 259 LPRPXLTSPGLACTGSLMPLPSFPRP 336 +P+P L PGLA G MP P P+P Sbjct: 267 MPQPGLAQPGLAQPG--MPQPGMPQP 290 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,966,318 Number of Sequences: 219361 Number of extensions: 1218630 Number of successful extensions: 3297 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 3198 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3289 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
