ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd13p20 |
|---|---|
| Clone Library Name | barley_pub |
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 103 bits (256), Expect = 6e-22 Identities = 46/82 (56%), Positives = 60/82 (73%), Gaps = 1/82 (1%) Frame = -1 Query: 559 PAADVAGTSEAVAVSPKRKEGP-NRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQF 383 P + ++ A A +P K NRCS CRKRVGLTGF CRCG+++C HRYSD+H C + Sbjct: 80 PPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSY 139 Query: 382 DYRTAARDAIAKANPVVKAEKL 317 DY++AARDAIA+ NPVV+A K+ Sbjct: 140 DYKSAARDAIARDNPVVRAAKI 161
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 101 bits (252), Expect = 2e-21 Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 3/91 (3%) Frame = -1 Query: 571 LVVQPAADVA--GTSEAVAVSPKR-KEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSD 401 +V QP+ V+ TS++ +P+ K NRC CRK+VGLTGF+CRCGN++C LHRYSD Sbjct: 123 VVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSD 182 Query: 400 KHDCQFDYRTAARDAIAKANPVVKAEKLDKI 308 KH+C +DY+ A I K NPVV AEK+ +I Sbjct: 183 KHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 100 bits (249), Expect = 4e-21 Identities = 49/93 (52%), Positives = 62/93 (66%), Gaps = 5/93 (5%) Frame = -1 Query: 571 LVVQPAADVAGTS-----EAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRY 407 +V QP+ V+ S E PK K+ NRC CRK+VGLTGF+CRCGN++C LHRY Sbjct: 123 VVTQPSPSVSQPSSSQSEEKAPELPKPKK--NRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180 Query: 406 SDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 308 SDKH+C +DY+ A I K NPVV AEK+ +I Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 99.8 bits (247), Expect = 6e-21 Identities = 43/78 (55%), Positives = 57/78 (73%) Frame = -1 Query: 541 GTSEAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAAR 362 G S A + P K RC +C K+VG+TGF CRCG+ +C HRY + H+CQFD++ AR Sbjct: 92 GDSAAAPLDPP-KSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAR 150 Query: 361 DAIAKANPVVKAEKLDKI 308 +AIAKANPVVKA+K+D+I Sbjct: 151 EAIAKANPVVKADKVDRI 168
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 96.3 bits (238), Expect = 7e-20 Identities = 41/69 (59%), Positives = 50/69 (72%) Frame = -1 Query: 514 PKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPV 335 P + PNRC+ CRKRVGLTGF CRCG +C HRY + H C FD+++A R+ IAKANP+ Sbjct: 93 PSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPL 152 Query: 334 VKAEKLDKI 308 V A KL KI Sbjct: 153 VIAAKLQKI 161
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 94.4 bits (233), Expect = 3e-19 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 1/89 (1%) Frame = -1 Query: 571 LVVQPAADVAGTSEAVAVSPKRKEGPN-RCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKH 395 +V + V +E P R PN RC +C K+VG+ GF C+CG+ +C HRY +KH Sbjct: 87 VVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKH 146 Query: 394 DCQFDYRTAARDAIAKANPVVKAEKLDKI 308 +C FD++ RDAIAKANP+VKA+K+ +I Sbjct: 147 ECSFDFKEVGRDAIAKANPLVKADKVQRI 175
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 49.3 bits (116), Expect = 1e-05 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Frame = -1 Query: 538 TSEAVAVSPKRKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTA 368 T + S +++ RC C+ ++ L +CRCG ++C LHR ++HDC FD+ Sbjct: 140 TERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR 199 Query: 367 ARDAIAKANPVVKAEKLDK 311 R+ ++K KLD+ Sbjct: 200 GRE-----EAIMKMVKLDR 213
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Frame = -1 Query: 508 RKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANP 338 +++ RC C+ ++ L +CRCG ++C LHR ++HDC FD+ R+ Sbjct: 150 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE-----EA 204 Query: 337 VVKAEKLDK 311 ++K KLD+ Sbjct: 205 IMKMVKLDR 213
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Frame = -1 Query: 508 RKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANP 338 +++ RC C+ ++ L +CRCG ++C LHR ++HDC FD+ R+ Sbjct: 150 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE-----EA 204 Query: 337 VVKAEKLDK 311 ++K KLD+ Sbjct: 205 IMKMVKLDR 213
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Frame = -1 Query: 517 SPKRKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAK 347 S +++ RC C+ ++ L +CRCG ++C LHR ++HDC FD+ R+ Sbjct: 146 SRSKQKSRRRCFRCQIKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE---- 201 Query: 346 ANPVVKAEKLDK 311 ++K KLD+ Sbjct: 202 -EAIMKMVKLDR 212
>ZFN2B_RAT (Q4KLG9) AN1-type zinc finger protein 2B| Length = 257 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = -1 Query: 511 KRKEGPNRC--STCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIA 350 KRK N+C S CR+R + RCG +C HR+ HDC + +R +A Sbjct: 92 KRKIFTNKCERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHDCSGEGHPTSRAGLA 147
>ZFN2B_MOUSE (Q91X58) AN1-type zinc finger protein 2B| Length = 257 Score = 34.3 bits (77), Expect = 0.33 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = -1 Query: 511 KRKEGPNRC--STCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIA 350 KRK N+C S CR+R + RCG +C HR+ H+C + +R +A Sbjct: 92 KRKIFTNKCERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHECSGEGHQTSRAGLA 147
>ZFN2B_HUMAN (Q8WV99) AN1-type zinc finger protein 2B| Length = 257 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -1 Query: 511 KRKEGPNRCST--CRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIA 350 KRK N+C CR+R + RC +C HR+ HDC + +R +A Sbjct: 92 KRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGEGHPTSRAGLA 147
>NORQ_PARDE (Q51664) Protein norQ| Length = 270 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -3 Query: 320 ARQDLGVL-QGRNGCNLPRFIIHLCCAILAPPFLVGCH 210 A DL VL +G GC RF+ H+ + P + V CH Sbjct: 32 AANDLPVLLKGPTGCGKTRFVAHMAARLGRPLYTVACH 69
>ZDHC1_HUMAN (Q8WTX9) Probable palmitoyltransferase ZDHHC1 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 1) (DHHC-1) (Zinc finger protein 377) (DHHC-domain-containing cysteine-rich protein 1) Length = 485 Score = 31.2 bits (69), Expect = 2.8 Identities = 34/119 (28%), Positives = 44/119 (36%), Gaps = 1/119 (0%) Frame = +2 Query: 287 FFPVGHLNLVELLCLHHWVGLGDGIPSCSPVVELAVMLVGIAVQRTVHVTASAVESR*PN 466 FF V ++ L HHWV G A M A VH+TA +++ N Sbjct: 61 FFAVIGFGILVPLLPHHWVPAG-----------YACMGAIFAGHLVVHLTAVSIDPADAN 109 Query: 467 PLPAS*APIRPLLPLGAHGNSFASACNISSRLHNECLHVNLSNRHLSARS-HSRNNNRC 640 S A P+ H + E LH NL N +SARS H N+C Sbjct: 110 VRDKSYAGPLPIFNRSQHAHVI------------EDLHCNLCNVDVSARSKHCSACNKC 156
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 30.4 bits (67), Expect = 4.7 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Frame = -1 Query: 574 ALVVQPAADVAGTSEAVAVSPKRKEGPNRCSTCRKRVG-LTGFNCRCGNMYCSLHRYSDK 398 AL+VQP A + E + V + GP RCS C+ V F + C+L Y+D+ Sbjct: 405 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 464 Query: 397 ----HDCQFDYRTAARDA 356 + C RDA Sbjct: 465 TPRDYQCNLGPDGRRRDA 482
>SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent| helicase IGHMBP2) (Immunoglobulin mu-binding protein 2) (SMUBP-2) (Glial factor 1) (GF-1) Length = 993 Score = 30.4 bits (67), Expect = 4.7 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Frame = -1 Query: 559 PAADVAGTSEAVAVSPKRKEGPNRCSTCRKRVGLT--GFNCR-CGNMYCSLHRYSDKHDC 389 PA D+ + A+ + N C + G+T G C+ C YC H + H C Sbjct: 873 PATDLPTEEDFEALVSAAVKADNTCGFAKCTAGVTTLGQFCQLCSRRYCLSHHLPEIHGC 932 Query: 388 QFDYRTAARDAIAK 347 R AR I++ Sbjct: 933 GERARAHARQRISR 946
>HM14_CAEEL (P20271) Homeobox protein ceh-14| Length = 351 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -1 Query: 490 RCSTCRKRVGLTGFNCRCGNMYCSLHRY 407 RCSTC+ +G T F R +MYC H Y Sbjct: 74 RCSTCKDELGATCF-LREDSMYCRAHFY 100
>CO9_MOUSE (P06683) Complement component C9 precursor| Length = 548 Score = 30.0 bits (66), Expect = 6.2 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -1 Query: 490 RCST--CRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAK 347 +C T C KR L + CG+ YSD++DC D RT RD +A+ Sbjct: 104 QCETGRCIKRRLLCNGDNDCGD-------YSDENDCDDDPRTPCRDRVAE 146
>ALG2_CANGA (Q6FJJ9) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1.-)| (GDP-Man:Man(1)GlcNAc(2)-PP-dolichol mannosyltransferase) (Asparagine-linked glycosylation protein 2) Length = 458 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Frame = -1 Query: 442 RCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI--*VSYREEMVAICQ 269 +C N Y S++RY K + + + A+ ++ N VV +I V Y +E+ +C+ Sbjct: 215 KCPNFYLSINRYERKKNIELAIQAFAKASVENTNLVVCGGYDPRIHENVQYLQELTCLCK 274
>DGK1_DROME (Q01583) Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase| 1) (DGK 1) (DAG kinase 1) Length = 1020 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%) Frame = -1 Query: 490 RCSTCRKRV----GLTGFNCR-CGNMYCSLHRYSDKHDC 389 RCS CRKR+ G+TG CR C M + S K +C Sbjct: 269 RCSKCRKRIKAYHGITGLTCRWCHMMLHNRCASSVKKEC 307
>YVDC_LACLA (Q9CE03) Hypothetical UPF0177 protein yvdC| Length = 261 Score = 29.6 bits (65), Expect = 8.0 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 14/100 (14%) Frame = -1 Query: 325 EKLDKI*VSYREEMVAICQGSSSIFAVPSLHLPFLLAATFPKLYGIVM--HTASWQLQEL 152 EKL + YR +V I S +V HLPFL+ A + G++ H + W + L Sbjct: 5 EKLQSL-AKYRWVIVIILALLFSALSVSIFHLPFLMTALVLSIVGLIFAYHKSVWLV--L 61 Query: 151 NPLSHSEWFACCV------------TLFMVVFSVSIVASH 68 LS+ A + +F ++F ++I++S+ Sbjct: 62 FILSNLPMLATTIFAYQHHFTTLDTVIFFIIFLLTIISSY 101
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +2 Query: 533 ASACNISSRLHNECLHVNLSNRHLSARSHSRNNNRCFPT 649 A+ N+ S++ +CL +L + L S RN + FP+ Sbjct: 390 AARANVESKVDRKCLEDSLEQKSLGKDSEGRNEDASFPS 428
>VG40_ICHV1 (Q00145) Hypothetical gene 40 protein| Length = 136 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -2 Query: 324 RSSTRFRCPTGKKWLQSAKVHHPSLLCHPCTSLSCWLPHFLNCTAS*CTLRRGS 163 RS++ F C + L ++ PS+ CT+ SCW H L +++ +RR S Sbjct: 26 RSNSWFVCKIVYRCLSPRRIISPSI----CTAFSCWANHGLRLSST-AAMRRSS 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,496,765 Number of Sequences: 219361 Number of extensions: 1917965 Number of successful extensions: 5836 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5521 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5834 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
