ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13p17 |
|---|---|
| Clone Library Name | barley_pub |
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 154 bits (390), Expect = 1e-37 Identities = 78/146 (53%), Positives = 103/146 (70%), Gaps = 3/146 (2%) Frame = -2 Query: 558 DETTLSNLPYYATHGFGARPYNATSFDAYVLEGSAPALPETKRLYYKLLKVGIKPVFITG 379 D T LSN+PYY HG+G +N+T +D +V +G+APALPET + Y KL+ +G K +F++G Sbjct: 108 DGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSG 167 Query: 378 RTEDKRAVTVGNLRSQGFSGWMNLTLK--QHGFKGSAISYKSAERKKLQDAGYVIVGNIG 205 RT DK+AVT NL+ G+ W L LK Q +A+SYK+A R+KL GY IVG IG Sbjct: 168 RTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIG 227 Query: 204 DQWSDILGAPEG-ARTFKLPDPIYYI 130 DQWSD+LG G +RTFKLP+P+YYI Sbjct: 228 DQWSDLLGGHRGESRTFKLPNPLYYI 253
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 153 bits (386), Expect = 4e-37 Identities = 80/145 (55%), Positives = 98/145 (67%), Gaps = 2/145 (1%) Frame = -2 Query: 558 DETTLSNLPYYATHGFGARPYNATSFDAYVLEGSAPALPETKRLYYKLLKVGIKPVFITG 379 D T LSN+PYY HG+G +N T +D +V +G APALPET + Y KLL +G K VF++G Sbjct: 109 DNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSG 168 Query: 378 RTEDKRAVTVGNLRSQGFSGWMNLTLKQ-HGFKGSAISYKSAERKKLQDAGYVIVGNIGD 202 R DK AVT NL+ GF W L LK H +A+SYKSA R+ L GY IVG IGD Sbjct: 169 RYLDKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGD 228 Query: 201 QWSDILGAPEG-ARTFKLPDPIYYI 130 QWSD+LG G +RTFKLP+P+YYI Sbjct: 229 QWSDLLGDHRGESRTFKLPNPMYYI 253
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 147 bits (370), Expect = 3e-35 Identities = 75/142 (52%), Positives = 99/142 (69%), Gaps = 3/142 (2%) Frame = -2 Query: 558 DETTLSNLPYYATHGFGARPYNATSFDAYVLEGSAPALPETKRLYYKLLKVGIKPVFITG 379 D T LSN+PYY HG+G +N+T +D +V +G+APALPET + Y KL+ +G K +F++G Sbjct: 105 DGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSG 164 Query: 378 RTEDKRAVTVGNLRSQGFSGWMNLTLK--QHGFKGSAISYKSAERKKLQDAGYVIVGNIG 205 RT DK+AVT NL+ G+ W L LK Q +A+SYK+A R+KL GY IVG IG Sbjct: 165 RTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIG 224 Query: 204 DQWSDILGAPEG-ARTFKLPDP 142 DQWSD+LG G +RTFKLP+P Sbjct: 225 DQWSDLLGGHRGESRTFKLPNP 246
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 138 bits (348), Expect = 9e-33 Identities = 69/144 (47%), Positives = 95/144 (65%), Gaps = 1/144 (0%) Frame = -2 Query: 558 DETTLSNLPYYATHGFGARPYNATSFDAYVLEGSAPALPETKRLYYKLLKVGIKPVFITG 379 DET LSNLPYY+ H +G ++ FD +V G+APAL + +LY ++LK+G K +TG Sbjct: 111 DETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTG 170 Query: 378 RTEDKRAVTVGNLRSQGFSGWMNLTLKQHGFKG-SAISYKSAERKKLQDAGYVIVGNIGD 202 R+E R+VTV NL + GF W L L+ G +A +YKS R + + G+ IVGN GD Sbjct: 171 RSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGD 230 Query: 201 QWSDILGAPEGARTFKLPDPIYYI 130 QWSD+LG+ R+FKLP+P+YYI Sbjct: 231 QWSDLLGSSMSYRSFKLPNPMYYI 254
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 123 bits (308), Expect = 4e-28 Identities = 62/144 (43%), Positives = 93/144 (64%), Gaps = 1/144 (0%) Frame = -2 Query: 558 DETTLSNLPYYATHGFGARPYNATSFDAYVLEG-SAPALPETKRLYYKLLKVGIKPVFIT 382 D+T LS++PYYA +G+G ++ +++ G S P LPET LY LL++GI+P+ I+ Sbjct: 126 DDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIIS 185 Query: 381 GRTEDKRAVTVGNLRSQGFSGWMNLTLKQHGFKGSAISYKSAERKKLQDAGYVIVGNIGD 202 R + +T+ NL++ G + W +L LK +G K + + YKS R L GY IVGNIGD Sbjct: 186 DRWKKLSEITIENLKAVGVTKWKHLILKPNGSKLTQVVYKSKVRNSLVKKGYNIVGNIGD 245 Query: 201 QWSDILGAPEGARTFKLPDPIYYI 130 QW+D++ G R FKLP+P+YY+ Sbjct: 246 QWADLVEDTPG-RVFKLPNPLYYV 268
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 117 bits (292), Expect = 3e-26 Identities = 59/144 (40%), Positives = 91/144 (63%), Gaps = 1/144 (0%) Frame = -2 Query: 558 DETTLSNLPYYATHGFGARPYNATSFDAYVLEG-SAPALPETKRLYYKLLKVGIKPVFIT 382 D+T LS++PYYA +G+G + ++ ++ G S P LPE LY ++++GI+P+ ++ Sbjct: 121 DDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILS 180 Query: 381 GRTEDKRAVTVGNLRSQGFSGWMNLTLKQHGFKGSAISYKSAERKKLQDAGYVIVGNIGD 202 R + + VT+ NL + G + W +L LK +G + YKS RK L GY IVGNIGD Sbjct: 181 DRWKLWKNVTLDNLEAAGVTYWKHLILKPNGSNLRQVVYKSKVRKSLVKKGYNIVGNIGD 240 Query: 201 QWSDILGAPEGARTFKLPDPIYYI 130 QW+D++ G R FKLP+P+YY+ Sbjct: 241 QWADLVEDTPG-RVFKLPNPLYYV 263
>HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane protein P4) (OMP| P4) Length = 274 Score = 35.0 bits (79), Expect = 0.14 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 1/124 (0%) Frame = -2 Query: 558 DETTLSNLPYYATHGFGARPYNATSFDAYVLEGSAPALPETKRLYYKLLKVGIKPVFITG 379 DET L N PY +P++ + +V + A+P + K ++T Sbjct: 86 DETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTN 145 Query: 378 RTED-KRAVTVGNLRSQGFSGWMNLTLKQHGFKGSAISYKSAERKKLQDAGYVIVGNIGD 202 R + +++ T+ +++ GF+G K S K+A +++ GY IV +GD Sbjct: 146 RKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDK----SAKAARFAEIEKQGYEIVLYVGD 201 Query: 201 QWSD 190 D Sbjct: 202 NLDD 205
>PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein 1/2 precursor| (PRP-1/PRP-2) (Parotid proline-rich protein 1/2) (Pr1/Pr2) (Protein C) (Parotid acidic protein) (Pa) (Parotid isoelectric focusing variant protein) (PIF-S) (Parotid double-band Length = 166 Score = 32.3 bits (72), Expect = 0.92 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = -1 Query: 412 QGGHQAGVHHRPDGG-QEGRHRREPPQPGLLRVDEPDAQAARIQG 281 QGGH RP G Q+G H++ PP P + P Q R QG Sbjct: 114 QGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQG 158
>AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC 1.1.1.-)| Length = 212 Score = 30.8 bits (68), Expect = 2.7 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 213 NIGDQWSDILGAPEGARTFKLPDPIY 136 +IGD WS+ILG+ R F+L D Y Sbjct: 38 SIGDAWSEILGSMSKERAFELLDAFY 63
>YIEC_ECOLI (P26218) Putative outer membrane protein yieC precursor| Length = 538 Score = 29.3 bits (64), Expect = 7.8 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = -2 Query: 351 VGNLRSQG--FSGWMNLTLKQHGFKGSAISYKSAERKKLQDAGYVIVGNIGDQWS 193 +G+L G +SGW +L LKQ + E K DA ++ GN+G Q+S Sbjct: 148 IGSLGRFGNEYSGWFDLQLKQRVYN---------ENGKRVDAVVMMDGNVGQQYS 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,659,061 Number of Sequences: 219361 Number of extensions: 1218967 Number of successful extensions: 3951 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3759 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3935 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
