>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  101 bits (251), Expect = 2e-21
 Identities = 49/65 (75%), Positives = 51/65 (78%)
 Frame = -1

Query: 305 KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYN 126
           KGVYQFVDKYGANVDGYSPIY  EEW+ +GD YAGGTTGLLIWAVT          LVYN
Sbjct: 75  KGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYN 134

Query: 125 TSALA 111
           TSALA
Sbjct: 135 TSALA 139

>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 47/65 (72%), Positives = 49/65 (75%)
 Frame = -1

Query: 305 KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYN 126
           KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG TGL +WAVT          LVY+
Sbjct: 73  KGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYS 132

Query: 125 TSALA 111
           TSALA
Sbjct: 133 TSALA 137

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score = 97.4 bits (241), Expect = 4e-20
 Identities = 47/65 (72%), Positives = 49/65 (75%)
 Frame = -1

Query: 305 KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYN 126
           KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y GGTTGL IWAVT          LVYN
Sbjct: 73  KGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYN 132

Query: 125 TSALA 111
           TSALA
Sbjct: 133 TSALA 137

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score = 97.4 bits (241), Expect = 4e-20
 Identities = 47/65 (72%), Positives = 49/65 (75%)
 Frame = -1

Query: 305 KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYN 126
           KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y GGTTGL IWAVT          LVYN
Sbjct: 73  KGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYN 132

Query: 125 TSALA 111
           TSALA
Sbjct: 133 TSALA 137

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 46/65 (70%), Positives = 49/65 (75%)
 Frame = -1

Query: 305 KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYN 126
           KGVYQFVDKYGANVDGYSPIY  ++WS SGD Y GGTTGL IWAVT          LV+N
Sbjct: 71  KGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFN 130

Query: 125 TSALA 111
           TSALA
Sbjct: 131 TSALA 135

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score = 93.2 bits (230), Expect = 7e-19
 Identities = 45/64 (70%), Positives = 47/64 (73%)
 Frame = -1

Query: 302 GVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNT 123
           GVY+FVDKYGANVDGYSPIY  +EWS SGD Y GG TGL IWAVT          LVYNT
Sbjct: 77  GVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNT 136

Query: 122 SALA 111
           SALA
Sbjct: 137 SALA 140

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 44/64 (68%), Positives = 46/64 (71%)
 Frame = -1

Query: 302 GVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNT 123
           GVY++VDKYGANVDGYSPIY   EWS SGD Y GG TGL IWAVT          LVYNT
Sbjct: 76  GVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNT 135

Query: 122 SALA 111
           SALA
Sbjct: 136 SALA 139

>RNH1_CRIFA (Q07762) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 494

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -1

Query: 428 SDTVLVSTINDADQGSADVAYRTPPAPYEKSSFAVVCSGGKKGVYQFVDKYGANVDGYS 252
           S  V V+       G    +   PPA   K SF VV  G ++G+Y   D+    V G+S
Sbjct: 124 SQKVGVAPTTSRASGETRTSCAPPPASRMKPSFYVVAVGRQRGIYSTWDQCSEQVKGFS 182

>MIM1_CHICK (P08940) Myeloid protein 1 precursor (p33)|
          Length = 326

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 362 TPPAPYEKSSFAVVCSGGKKGVYQFVDKYGANVDG 258
           +PP P + + +AVVC+G      +  DKYG    G
Sbjct: 172 SPPFPQQDAHWAVVCAGNPTNEIRGCDKYGCGYFG 206

>CY552_THIFE (P74917) Cytochrome c-552 precursor (Cytochrome c552)|
          Length = 230

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -1

Query: 395 ADQGSADVAYRTPPAPYEKSSFAVVCSG--GKKGVYQFVDKYGANVDGY 255
           A Q SA V     PAPY  SS  +VC G  G+  +Y  V +       Y
Sbjct: 41  AGQASAAVGSADAPAPYRVSSDCMVCHGMTGRDTLYPIVPRLAGQHKSY 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,011,085
Number of Sequences: 219361
Number of extensions: 1658327
Number of successful extensions: 3832
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3832
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)