>COX1_PHYME (Q02211) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 492

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 16/100 (16%)
 Frame = +2

Query: 302 IPGKLLTRVSQSXXXXXXXXXLSKFPPK*SLEKERG----------------SLLSGANG 433
           +P  LL  VS +          + +PP  S++   G                SLL   N 
Sbjct: 114 LPPALLLLVSSAIVESGAGTGWTVYPPLSSVQAHSGPSVDLAIFSLHLTGISSLLGAINF 173

Query: 434 RTCVPGVRAPATSVVRFHSFPIFTDPSLISLMLRLLKRPL 553
            + +  +RAP  S   FH  P+F    LI+  L LL  P+
Sbjct: 174 ISTIYNMRAPGLS---FHRLPLFVWSVLITAFLLLLTLPV 210

>ACCD_EPIVI (P30064) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           beta (EC 6.4.1.2) (ACCase beta chain)
          Length = 493

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 273 PMHQQLCACFAACLLSRLMISPFAVPDAKCCTIFGCF 163
           P +  + +C  + L S++ ++P  + D+    IFGCF
Sbjct: 154 PSNNHITSCIESYLQSQICVNPSIISDSSDSYIFGCF 190

>BST2_HUMAN (Q10589) Bone marrow stromal antigen 2 (BST-2) (CD317 antigen)|
          Length = 180

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 130 HRDEQTVSEREEATKYCTTLSIRYSKRRYHQAGQEASRKAGAQLLVHRFG 279
           H+ +   +E E   +    LS+R + ++Y+ + Q++S  A  QLL+   G
Sbjct: 125 HKLQDASAEVERLRRENQVLSVRIADKKYYPSSQDSSSAAAPQLLIVLLG 174

>TOP1_BUCAP (Q8K9P7) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 853

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 615 EEFVAMMKTGTDWRKASRHYSRGRFNSLSIRLIKDGSVKMGN 490
           +  V  M +   W+K SR  S GR  S ++RLI D   ++ N
Sbjct: 166 DRIVGYMISPLLWKKISRGLSAGRVQSAAVRLITDREYEIKN 207

>SYM_HAEDU (Q7VMC9) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 684

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 100 DTPSRPLTVSAALLSTVPKQHIAKRKGDHVA 8
           D    P+ ++AA     P+Q IAK K DH+A
Sbjct: 52  DAHGTPIMLNAAKQGITPEQLIAKAKADHIA 82

>COABC_BORBU (O51752) Coenzyme A biosynthesis bifunctional protein coaBC|
           (DNA/pantothenate metabolism flavoprotein) [Includes:
           Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)
           (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC
           6.3.2.5) (Phosp
          Length = 390

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 140 NRLYLRGKKQPNIVQHLASGTAKGDII 220
           NRLY++  K P+I+QH+     K  I+
Sbjct: 294 NRLYIKLVKNPDIIQHIGHNKLKNQIV 320


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,042,589
Number of Sequences: 219361
Number of extensions: 1612489
Number of successful extensions: 4828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4827
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)