ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14e13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK064935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 424 e-115
2dbj|AK061992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 424 e-115
3gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 119 1e-23
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
5gb|AY112133.1| Zea mays CL6510_1 mRNA sequence 86 2e-13
6gb|AC092284.2| Homo sapiens chromosome 5 clone CTD-2160D9, compl... 48 0.037
7gb|AC113407.2| Homo sapiens chromosome 5 clone RP11-475J5, compl... 48 0.037
8gb|AC118344.2| Homo sapiens chromosome 19 clone CTC-425O23, comp... 46 0.15
9ref|XM_678808.1| PREDICTED: Danio rerio similar to Rho GTPase ac... 46 0.15
10emb|BX120013.5| Zebrafish DNA sequence from clone DKEY-76H10, co... 46 0.15
11ref|XM_655812.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 2.3
12ref|XM_854016.1| PREDICTED: Canis familiaris similar to eukaryot... 42 2.3
13ref|XM_844470.1| PREDICTED: Canis familiaris similar to eukaryot... 42 2.3
14gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 2.3
15gb|AC110244.10| Mus musculus chromosome 5, clone RP23-247E10, co... 40 9.0
16gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 9.0
17gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 9.0
18gb|AC158392.2| Mus musculus BAC clone RP24-87B5 from chromosome ... 40 9.0
19ref|XM_844910.1| PREDICTED: Canis familiaris similar to shroom (... 40 9.0
20gb|AC125106.3| Mus musculus BAC clone RP24-221A9 from chromosome... 40 9.0
21emb|AL592296.16| Human DNA sequence from clone RP11-792P23 on ch... 40 9.0
22emb|AL160162.11| Human DNA sequence from clone RP1-200K18 on chr... 40 9.0
23emb|CR381633.6| Zebrafish DNA sequence from clone CH211-230M9 in... 40 9.0
24emb|BX548254.7| Zebrafish DNA sequence from clone CH211-243D12 i... 40 9.0
25gb|AC005313.3| Arabidopsis thaliana chromosome 2 clone T18E12 ma... 40 9.0
26gb|AC161057.2| Mus musculus BAC clone RP23-248K11 from chromosom... 40 9.0
27gb|AY967172.1| Synthetic construct isolate FTT0979 unknown prote... 40 9.0
28gb|AY702039.1| Dengue virus type 2 strain Cuba205/97, complete g... 40 9.0
29gb|AY702038.1| Dengue virus type 2 strain Cuba165/97, complete g... 40 9.0
30gb|AY702037.1| Dengue virus type 2 strain Cuba89/97, complete ge... 40 9.0
31gb|AY702036.1| Dengue virus type 2 strain Cuba115/97, complete g... 40 9.0
32emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 9.0
33emb|AM233362.1| Francisella tularensis subsp. holarctica strain ... 40 9.0
34emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4... 40 9.0
35emb|CT025538.13| Mouse DNA sequence from clone RP23-386E7 on chr... 40 9.0
36gb|AC146299.5| Mus musculus BAC clone RP23-72A20 from 9, complet... 40 9.0
37dbj|AP007292.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 9.0
38dbj|AP006120.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 9.0 
>dbj|AK064935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O24, full
            insert sequence
          Length = 2427

 Score =  424 bits (214), Expect = e-115
 Identities = 507/604 (83%), Gaps = 1/604 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   aaggattttctcagagcgataaaagcaacgaagaatatcggggagacgaggaagaccatg 107
            ||||||||||||| ||| | ||||||||| |||||||| ||||| || ||||||| ||||
Sbjct: 2310 aaggattttctcaaagcaacaaaagcaaccaagaatattggggaaacaaggaagagcatg 2251

                                                                        
Query: 108  taggggacgatctgcccaatccccacctcgggctcgtccgggttcgcgtagtagttcctc 167
            || |||| ||||||  | || |||| ||| || |||||  ||   |||||||||||| ||
Sbjct: 2250 tacgggatgatctgatcgatgcccatctcaggttcgtctagggcagcgtagtagttcttc 2191

                                                                        
Query: 168  tgcccgccgaactggtcgaagtacccctcgtagcccgtgttgcggggcaccggcacgcca 227
            || || || |||| ||||||||||  ||||||||||||||| |||||||  ||   ||  
Sbjct: 2190 tggcccccaaacttgtcgaagtacttctcgtagcccgtgttacggggcaaaggggagctg 2131

                                                                        
Query: 228  tcgaccttcaggaagtccgccgcctgaaagctgaacatgaacatttttgccttcttgctg 287
            |  ||||||| |||||||  |||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 2130 ttcaccttcatgaagtccatcgcctgaaagctgaacatgaacatgtttgctttcttactg 2071

                                                                        
Query: 288  actcgatcgtttgggtggtatttcagcttgctatacatgcccatggcttccttggacctg 347
            | |  |   ||||| || | ||| || ||||| ||||||| |||||||||||||||||||
Sbjct: 2070 atttcagaatttggatgatttttgagtttgctgtacatgctcatggcttccttggacctg 2011

                                                                        
Query: 348  cagagtgaatctagacagatggaccactggagagcagccattccatgaagttcggtctta 407
            ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| 
Sbjct: 2010 cagagtgaatctagacagatggaccactgcaaagcagccattccatgaagttcagtcttg 1951

                                                                        
Query: 408  aagtccgcagcctgcatcactttttcataataaggcaaagcttgtttcagccttccagca 467
            |||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||| |
Sbjct: 1950 aagtccacagcctgcatcactttttcataataaggcaatgcttgtttaagtcttccagta 1891

                                                                        
Query: 468  ttcataagctcgtcaccttccttcaatgccttggtgcactctgcctttgtttttgcatcg 527
            ||||| ||||| |||||||||||||| ||||  ||||||||||||||||| |||||||| 
Sbjct: 1890 ttcatcagctcatcaccttccttcaaggcctcagtgcactctgcctttgtctttgcatca 1831

                                                                        
Query: 528  agtgtcttgttttttccaccaatatatgcagctagtaattctctggtacgtttatcttta 587
            | | || |||| |  | |    |||||||||||| ||  ||| ||||||||||||| || 
Sbjct: 1830 actatcatgttctgactattcctatatgcagctattagctctttggtacgtttatccttg 1771

                                                                        
Query: 588  gctgccttctcttcagcactttgagtctctncaccaaggcttatattttcttncaccacc 647
            ||||||||||||||||||||| |||||||| ||||||||| |||| |||||| | |||||
Sbjct: 1770 gctgccttctcttcagcacttcgagtctctccaccaaggcgtata-tttcttccgccacc 1712

                
Query: 648  atac 651
            ||||
Sbjct: 1711 atac 1708
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>dbj|AK061992.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C02, full
           insert sequence
          Length = 908

 Score =  424 bits (214), Expect = e-115
 Identities = 507/604 (83%), Gaps = 1/604 (0%)
 Strand = Plus / Minus

                                                                       
Query: 48  aaggattttctcagagcgataaaagcaacgaagaatatcggggagacgaggaagaccatg 107
           ||||||||||||| ||| | ||||||||| |||||||| ||||| || ||||||| ||||
Sbjct: 869 aaggattttctcaaagcaacaaaagcaaccaagaatattggggaaacaaggaagagcatg 810

                                                                       
Query: 108 taggggacgatctgcccaatccccacctcgggctcgtccgggttcgcgtagtagttcctc 167
           || |||| ||||||  | || |||| ||| || |||||  ||   |||||||||||| ||
Sbjct: 809 tacgggatgatctgatcgatgcccatctcaggttcgtctagggcagcgtagtagttcttc 750

                                                                       
Query: 168 tgcccgccgaactggtcgaagtacccctcgtagcccgtgttgcggggcaccggcacgcca 227
           || || || |||| ||||||||||  ||||||||||||||| |||||||  ||   ||  
Sbjct: 749 tggcccccaaacttgtcgaagtacttctcgtagcccgtgttacggggcaaaggggagctg 690

                                                                       
Query: 228 tcgaccttcaggaagtccgccgcctgaaagctgaacatgaacatttttgccttcttgctg 287
           |  ||||||| |||||||  |||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 689 ttcaccttcatgaagtccatcgcctgaaagctgaacatgaacatgtttgctttcttactg 630

                                                                       
Query: 288 actcgatcgtttgggtggtatttcagcttgctatacatgcccatggcttccttggacctg 347
           | |  |   ||||| || | ||| || ||||| ||||||| |||||||||||||||||||
Sbjct: 629 atttcagaatttggatgatttttgagtttgctgtacatgctcatggcttccttggacctg 570

                                                                       
Query: 348 cagagtgaatctagacagatggaccactggagagcagccattccatgaagttcggtctta 407
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| 
Sbjct: 569 cagagtgaatctagacagatggaccactgcaaagcagccattccatgaagttcagtcttg 510

                                                                       
Query: 408 aagtccgcagcctgcatcactttttcataataaggcaaagcttgtttcagccttccagca 467
           |||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||| |
Sbjct: 509 aagtccacagcctgcatcactttttcataataaggcaatgcttgtttaagtcttccagta 450

                                                                       
Query: 468 ttcataagctcgtcaccttccttcaatgccttggtgcactctgcctttgtttttgcatcg 527
           ||||| ||||| |||||||||||||| ||||  ||||||||||||||||| |||||||| 
Sbjct: 449 ttcatcagctcatcaccttccttcaaggcctcagtgcactctgcctttgtctttgcatca 390

                                                                       
Query: 528 agtgtcttgttttttccaccaatatatgcagctagtaattctctggtacgtttatcttta 587
           | | || |||| |  | |    |||||||||||| ||  ||| ||||||||||||| || 
Sbjct: 389 actatcatgttctgactattcctatatgcagctattagctctttggtacgtttatccttg 330

                                                                       
Query: 588 gctgccttctcttcagcactttgagtctctncaccaaggcttatattttcttncaccacc 647
           ||||||||||||||||||||| |||||||| ||||||||| |||| |||||| | |||||
Sbjct: 329 gctgccttctcttcagcacttcgagtctctccaccaaggcgtata-tttcttccgccacc 271

               
Query: 648 atac 651
           ||||
Sbjct: 270 atac 267
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0088M05, complete sequence
          Length = 153368

 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Minus

                                                                         
Query: 408   aagtccgcagcctgcatcactttttcataataaggcaaagcttgtttcagccttccagca 467
             |||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||| |
Sbjct: 85250 aagtccacagcctgcatcactttttcataataaggcaatgcttgtttaagtcttccagta 85191

                                             
Query: 468   ttcataagctcgtcaccttccttcaatgcctt 499
             ||||| ||||| |||||||||||||| |||||
Sbjct: 85190 ttcatcagctcatcaccttccttcaaggcctt 85159



 Score =  103 bits (52), Expect = 7e-19
 Identities = 90/102 (88%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                         
Query: 550   tatatgcagctagtaattctctggtacgtttatctttagctgccttctcttcagcacttt 609
             |||||||||||| ||  ||| ||||||||||||| || ||||||||||||||||||||| 
Sbjct: 84785 tatatgcagctattagctctttggtacgtttatccttggctgccttctcttcagcacttc 84726

                                                       
Query: 610   gagtctctncaccaaggcttatattttcttncaccaccatac 651
             |||||||| ||||||||| |||| |||||| | |||||||||
Sbjct: 84725 gagtctctccaccaaggcgtata-tttcttccgccaccatac 84685



 Score =  101 bits (51), Expect = 3e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                         
Query: 343   acctgcagagtgaatctagacagatggaccactggagagcagccattccatgaagttcgg 402
             |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct: 85527 acctgcagagtgaatctagacagatggaccactgcaaagcagccattccatgaagttcag 85468

                
Query: 403   tct 405
             |||
Sbjct: 85467 tct 85465



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 139/169 (82%)
 Strand = Plus / Minus

                                                                         
Query: 48    aaggattttctcagagcgataaaagcaacgaagaatatcggggagacgaggaagaccatg 107
             ||||||||||||| ||| | ||||||||| |||||||| ||||| || ||||||| ||||
Sbjct: 86355 aaggattttctcaaagcaacaaaagcaaccaagaatattggggaaacaaggaagagcatg 86296

                                                                         
Query: 108   taggggacgatctgcccaatccccacctcgggctcgtccgggttcgcgtagtagttcctc 167
             || |||| ||||||  | || |||| ||| || |||||  ||   |||||||||||| ||
Sbjct: 86295 tacgggatgatctgatcgatgcccatctcaggttcgtctagggcagcgtagtagttcttc 86236

                                                              
Query: 168   tgcccgccgaactggtcgaagtacccctcgtagcccgtgttgcggggca 216
             || || || |||| ||||||||||  ||||||||||||||| |||||||
Sbjct: 86235 tggcccccaaacttgtcgaagtacttctcgtagcccgtgttacggggca 86187



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                         
Query: 250   cctgaaagctgaacatgaacatttttgccttcttgctgactcgatcgtttgggtggtatt 309
             |||||||||||||||||||||| ||||| ||||| |||| |  |   ||||| || | ||
Sbjct: 86008 cctgaaagctgaacatgaacatgtttgctttcttactgatttcagaatttggatgatttt 85949

                                                  
Query: 310   tcagcttgctatacatgcccatggcttccttggacct 346
             | || ||||| ||||||| ||||||||||||||||||
Sbjct: 85948 tgagtttgctgtacatgctcatggcttccttggacct 85912
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Minus

                                                                            
Query: 408      aagtccgcagcctgcatcactttttcataataaggcaaagcttgtttcagccttccagca 467
                |||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||| |
Sbjct: 18292038 aagtccacagcctgcatcactttttcataataaggcaatgcttgtttaagtcttccagta 18291979

                                                
Query: 468      ttcataagctcgtcaccttccttcaatgcctt 499
                ||||| ||||| |||||||||||||| |||||
Sbjct: 18291978 ttcatcagctcatcaccttccttcaaggcctt 18291947



 Score =  103 bits (52), Expect = 7e-19
 Identities = 90/102 (88%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                            
Query: 550      tatatgcagctagtaattctctggtacgtttatctttagctgccttctcttcagcacttt 609
                |||||||||||| ||  ||| ||||||||||||| || ||||||||||||||||||||| 
Sbjct: 18291573 tatatgcagctattagctctttggtacgtttatccttggctgccttctcttcagcacttc 18291514

                                                          
Query: 610      gagtctctncaccaaggcttatattttcttncaccaccatac 651
                |||||||| ||||||||| |||| |||||| | |||||||||
Sbjct: 18291513 gagtctctccaccaaggcgtata-tttcttccgccaccatac 18291473



 Score =  101 bits (51), Expect = 3e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                            
Query: 343      acctgcagagtgaatctagacagatggaccactggagagcagccattccatgaagttcgg 402
                |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct: 18292315 acctgcagagtgaatctagacagatggaccactgcaaagcagccattccatgaagttcag 18292256

                   
Query: 403      tct 405
                |||
Sbjct: 18292255 tct 18292253



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 139/169 (82%)
 Strand = Plus / Minus

                                                                            
Query: 48       aaggattttctcagagcgataaaagcaacgaagaatatcggggagacgaggaagaccatg 107
                ||||||||||||| ||| | ||||||||| |||||||| ||||| || ||||||| ||||
Sbjct: 18293143 aaggattttctcaaagcaacaaaagcaaccaagaatattggggaaacaaggaagagcatg 18293084

                                                                            
Query: 108      taggggacgatctgcccaatccccacctcgggctcgtccgggttcgcgtagtagttcctc 167
                || |||| ||||||  | || |||| ||| || |||||  ||   |||||||||||| ||
Sbjct: 18293083 tacgggatgatctgatcgatgcccatctcaggttcgtctagggcagcgtagtagttcttc 18293024

                                                                 
Query: 168      tgcccgccgaactggtcgaagtacccctcgtagcccgtgttgcggggca 216
                || || || |||| ||||||||||  ||||||||||||||| |||||||
Sbjct: 18293023 tggcccccaaacttgtcgaagtacttctcgtagcccgtgttacggggca 18292975



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                            
Query: 250      cctgaaagctgaacatgaacatttttgccttcttgctgactcgatcgtttgggtggtatt 309
                |||||||||||||||||||||| ||||| ||||| |||| |  |   ||||| || | ||
Sbjct: 18292796 cctgaaagctgaacatgaacatgtttgctttcttactgatttcagaatttggatgatttt 18292737

                                                     
Query: 310      tcagcttgctatacatgcccatggcttccttggacct 346
                | || ||||| ||||||| ||||||||||||||||||
Sbjct: 18292736 tgagtttgctgtacatgctcatggcttccttggacct 18292700
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>gb|AY112133.1| Zea mays CL6510_1 mRNA sequence
          Length = 527

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 315 ttgctatacatgcccatggcttccttggacctgcagagtgaatctagacagatggacca 373
           ||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 272 ttgctatacatgctcattgcttccttggacctgcaaagtgaatcaagacagatggacca 214



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 249 gcctgaaagctgaacatgaacatttttgccttcttgctga 288
           |||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 338 gcctgaaagctgaacacgaacatgtttgctttcttgctga 299
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>gb|AC092284.2| Homo sapiens chromosome 5 clone CTD-2160D9, complete sequence
          Length = 107044

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 594   ttctcttcagcactttgagtctct 617
             ||||||||||||||||||||||||
Sbjct: 88489 ttctcttcagcactttgagtctct 88466
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>gb|AC113407.2| Homo sapiens chromosome 5 clone RP11-475J5, complete sequence
          Length = 186648

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 594   ttctcttcagcactttgagtctct 617
             ||||||||||||||||||||||||
Sbjct: 81124 ttctcttcagcactttgagtctct 81101
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>gb|AC118344.2| Homo sapiens chromosome 19 clone CTC-425O23, complete sequence
          Length = 178335

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 500    ggtgcactctgcctttgtttttg 522
              |||||||||||||||||||||||
Sbjct: 171154 ggtgcactctgcctttgtttttg 171132
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>ref|XM_678808.1| PREDICTED: Danio rerio similar to Rho GTPase activating protein 21
            (LOC556095), mRNA
          Length = 5541

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 595  tctcttcagcactttgagtctct 617
            |||||||||||||||||||||||
Sbjct: 3438 tctcttcagcactttgagtctct 3416
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>emb|BX120013.5| Zebrafish DNA sequence from clone DKEY-76H10, complete sequence
          Length = 170264

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 595   tctcttcagcactttgagtctct 617
             |||||||||||||||||||||||
Sbjct: 33070 tctcttcagcactttgagtctct 33048
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>ref|XM_655812.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3300.2), mRNA
          Length = 1869

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 34   tttcttacagcatcaaggatt 54
            |||||||||||||||||||||
Sbjct: 1421 tttcttacagcatcaaggatt 1401
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>ref|XM_854016.1| PREDICTED: Canis familiaris similar to eukaryotic translation
           elongation factor 1 alpha 1, transcript variant 2
           (LOC475210), mRNA
          Length = 1646

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 251 ctgaaagctgaacatgaacat 271
           |||||||||||||||||||||
Sbjct: 266 ctgaaagctgaacatgaacat 286
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>ref|XM_844470.1| PREDICTED: Canis familiaris similar to eukaryotic translation
           elongation factor 1 alpha 1, transcript variant 1
           (LOC475210), mRNA
          Length = 1662

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 251 ctgaaagctgaacatgaacat 271
           |||||||||||||||||||||
Sbjct: 282 ctgaaagctgaacatgaacat 302
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 168     tgcccgccgaactggtcgaag 188
               |||||||||||||||||||||
Sbjct: 1081469 tgcccgccgaactggtcgaag 1081449
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>gb|AC110244.10| Mus musculus chromosome 5, clone RP23-247E10, complete sequence
          Length = 214638

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 414   gcagcctgcatcactttttcataa 437
             ||||||| ||||||||||||||||
Sbjct: 71828 gcagcctacatcactttttcataa 71805
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ctgcccgccgaactggtcga 186
              ||||||||||||||||||||
Sbjct: 715493 ctgcccgccgaactggtcga 715474
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 167     ctgcccgccgaactggtcga 186
               ||||||||||||||||||||
Sbjct: 5167489 ctgcccgccgaactggtcga 5167508
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>gb|AC158392.2| Mus musculus BAC clone RP24-87B5 from chromosome 14, complete
            sequence
          Length = 187798

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 380  agcagccattccatgaagtt 399
            ||||||||||||||||||||
Sbjct: 2421 agcagccattccatgaagtt 2402
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>ref|XM_844910.1| PREDICTED: Canis familiaris similar to shroom (LOC478438), mRNA
          Length = 6878

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  acatgcccatggcttccttg 341
            ||||||||||||||||||||
Sbjct: 5692 acatgcccatggcttccttg 5673
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>gb|AC125106.3| Mus musculus BAC clone RP24-221A9 from chromosome 9, complete sequence
          Length = 159785

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 28     tttccttttcttacagcatcaaggattttctc 59
              ||||||||||||| ||||| || |||||||||
Sbjct: 155460 tttccttttcttatagcattaaagattttctc 155491
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>emb|AL592296.16| Human DNA sequence from clone RP11-792P23 on chromosome 10 Contains a
             novel pseudogene and the 3' end of a novel gene
             (MGC46732), complete sequence
          Length = 77088

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 415   cagcctgcatcactttttcataat 438
             |||||||||||||||| |||||||
Sbjct: 52989 cagcctgcatcactttctcataat 52966
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>emb|AL160162.11| Human DNA sequence from clone RP1-200K18 on chromosome 6 Contains a
             novel gene, complete sequence
          Length = 82329

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   tttcataataaggcaaagct 449
             ||||||||||||||||||||
Sbjct: 51958 tttcataataaggcaaagct 51977
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>emb|CR381633.6| Zebrafish DNA sequence from clone CH211-230M9 in linkage group 14,
              complete sequence
          Length = 163910

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 598    cttcagcactttgagtctct 617
              ||||||||||||||||||||
Sbjct: 129250 cttcagcactttgagtctct 129269
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>emb|BX548254.7| Zebrafish DNA sequence from clone CH211-243D12 in linkage group 16,
              complete sequence
          Length = 149138

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     tgtttccttttcttacagca 45
              ||||||||||||||||||||
Sbjct: 125702 tgtttccttttcttacagca 125721
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>gb|AC005313.3| Arabidopsis thaliana chromosome 2 clone T18E12 map CIC11A04, complete
             sequence
          Length = 91318

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    ttcatgttgtttccttttct 38
             ||||||||||||||||||||
Sbjct: 54081 ttcatgttgtttccttttct 54100
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>gb|AC161057.2| Mus musculus BAC clone RP23-248K11 from chromosome 12, complete
             sequence
          Length = 217206

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 628   ttatattttcttncaccaccata 650
             |||||||||||| ||||||||||
Sbjct: 89767 ttatattttctttcaccaccata 89789
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>gb|AY967172.1| Synthetic construct isolate FTT0979 unknown protein gene, complete
           cds
          Length = 1473

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 552 tatgcagctagtaattctct 571
           ||||||||||||||||||||
Sbjct: 936 tatgcagctagtaattctct 955
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>gb|AY702039.1| Dengue virus type 2 strain Cuba205/97, complete genome
          Length = 10722

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  gttttttccaccaatatatg 555
            ||||||||||||||||||||
Sbjct: 2905 gttttttccaccaatatatg 2924
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>gb|AY702038.1| Dengue virus type 2 strain Cuba165/97, complete genome
          Length = 10722

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  gttttttccaccaatatatg 555
            ||||||||||||||||||||
Sbjct: 2905 gttttttccaccaatatatg 2924
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>gb|AY702037.1| Dengue virus type 2 strain Cuba89/97, complete genome
          Length = 10722

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  gttttttccaccaatatatg 555
            ||||||||||||||||||||
Sbjct: 2905 gttttttccaccaatatatg 2924
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>gb|AY702036.1| Dengue virus type 2 strain Cuba115/97, complete genome
          Length = 10722

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  gttttttccaccaatatatg 555
            ||||||||||||||||||||
Sbjct: 2905 gttttttccaccaatatatg 2924
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     gcaccggcacgccatcgacc 233
               ||||||||||||||||||||
Sbjct: 2342772 gcaccggcacgccatcgacc 2342753
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>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome
          Length = 1895994

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 552     tatgcagctagtaattctct 571
               ||||||||||||||||||||
Sbjct: 1172156 tatgcagctagtaattctct 1172175
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>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome
          Length = 1892819

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 552    tatgcagctagtaattctct 571
              ||||||||||||||||||||
Sbjct: 990041 tatgcagctagtaattctct 990022
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>emb|CT025538.13| Mouse DNA sequence from clone RP23-386E7 on chromosome 14, complete
             sequence
          Length = 206957

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   agcagccattccatgaagtt 399
             ||||||||||||||||||||
Sbjct: 39579 agcagccattccatgaagtt 39598
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>gb|AC146299.5| Mus musculus BAC clone RP23-72A20 from 9, complete sequence
          Length = 166132

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 28    tttccttttcttacagcatcaaggattttctc 59
             ||||||||||||| ||||| || |||||||||
Sbjct: 88509 tttccttttcttatagcattaaagattttctc 88540
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>dbj|AP007292.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT45D08, TM0313,
             complete sequence
          Length = 98441

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    atgttgtttccttttcttac 41
             ||||||||||||||||||||
Sbjct: 62303 atgttgtttccttttcttac 62322
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>dbj|AP006120.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT39P22, TM0204,
             complete sequence
          Length = 98532

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    atgttgtttccttttcttac 41
             ||||||||||||||||||||
Sbjct: 77698 atgttgtttccttttcttac 77717


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,280,425
Number of Sequences: 3902068
Number of extensions: 6280425
Number of successful extensions: 123674
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123426
Number of HSP's gapped (non-prelim): 248
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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