ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13p05 |
|---|---|
| Clone Library Name | barley_pub |
>PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16| (EC 3.6.1.-) (ATP-dependent RNA helicase DHX38) (DEAH box protein 38) Length = 1227 Score = 155 bits (392), Expect = 1e-37 Identities = 74/149 (49%), Positives = 96/149 (64%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 IC+AYFH +A+LKGIGEYVN R GMPCHLHP+S+L+G+GYTPDY+VYHELV+TTKEYMQC Sbjct: 1073 ICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQC 1132 Query: 495 VSAVDPQWLAELGPMFFSVKDTDTSLLDHKKRQXXXXXXXXXXXXKLRQEQXXXXXXXXX 316 V+AVD +WLAELGPMF+SVK S ++++R L +EQ Sbjct: 1133 VTAVDGEWLAELGPMFYSVKQAGKSRQENRRR-AKEEASAMEEEMALAEEQLRARRQEQE 1191 Query: 315 XXXXXXXXXXXQISMPGLKKGSTYLRPKK 229 +I PG K+ + P++ Sbjct: 1192 KRSPLGSVRSTKIYTPGRKEQGEPMTPRR 1220
>MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase| mog-1 (EC 3.6.1.-) (Sex determination protein mog-1) (Masculinization of germ line protein 1) Length = 1131 Score = 145 bits (367), Expect = 8e-35 Identities = 63/85 (74%), Positives = 76/85 (89%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 ICSAYFHN+ARLKGIGEYVN R G+PC LHP+SAL+G+G+ PDYVVYHEL++T KEYMQC Sbjct: 983 ICSAYFHNAARLKGIGEYVNVRTGIPCFLHPTSALFGMGFMPDYVVYHELIMTAKEYMQC 1042 Query: 495 VSAVDPQWLAELGPMFFSVKDTDTS 421 V+AVD WLAELGPMF+S+K++ S Sbjct: 1043 VTAVDAIWLAELGPMFYSIKESKQS 1067
>PRP16_SCHPO (Q9P774) Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16| (EC 3.6.1.-) Length = 1173 Score = 130 bits (326), Expect = 5e-30 Identities = 56/81 (69%), Positives = 70/81 (86%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 +CSAYFH +A KGIGEYV+ R+GMPCHLH +S+LYGLGY PDYV+YHELVLT+KEYM Sbjct: 1032 LCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNI 1091 Query: 495 VSAVDPQWLAELGPMFFSVKD 433 V++VDP WLAE G +++SVK+ Sbjct: 1092 VTSVDPYWLAEFGGVYYSVKE 1112
>PRP16_YEAST (P15938) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16| (EC 3.6.1.-) Length = 1071 Score = 95.9 bits (237), Expect = 1e-19 Identities = 40/80 (50%), Positives = 59/80 (73%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 ICS + H +A++ G+ YV+ + G+ LHP+SAL+GLG P YVVYHEL++T+KEY+ C Sbjct: 907 ICSGFAHQAAKITGLRNYVHLKTGVSVQLHPTSALHGLGDLPPYVVYHELLMTSKEYICC 966 Query: 495 VSAVDPQWLAELGPMFFSVK 436 V++VDP WL E G + + +K Sbjct: 967 VTSVDPFWLMEYGGLLYDIK 986
>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase| mog-5 (EC 3.6.1.-) (Sex determination protein mog-5) (Masculinization of germ line protein 5) Length = 1200 Score = 83.2 bits (204), Expect = 7e-16 Identities = 42/93 (45%), Positives = 59/93 (63%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 ICS +F N+A+ Y +G ++HPSSA + P++VVYHELV+TTKEYM+ Sbjct: 1082 ICSGFFRNAAKRDPQEGYRTLTDGQNVYIHPSSACFQ--QQPEWVVYHELVMTTKEYMRE 1139 Query: 495 VSAVDPQWLAELGPMFFSVKDTDTSLLDHKKRQ 397 V+A+DP+WL E P FF + D+ T L K+ Q Sbjct: 1140 VTAIDPKWLVEFAPSFFKIGDS-TKLSTFKRNQ 1171
>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box| protein 8) (RNA helicase HRH1) Length = 1220 Score = 83.2 bits (204), Expect = 7e-16 Identities = 44/93 (47%), Positives = 58/93 (62%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 ICS +F N+A+ Y + ++HPSSAL+ P++VVYHELVLTTKEYM+ Sbjct: 1107 ICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNR--QPEWVVYHELVLTTKEYMRE 1164 Query: 495 VSAVDPQWLAELGPMFFSVKDTDTSLLDHKKRQ 397 V+ +DP+WL E P FF V D T L KK+Q Sbjct: 1165 VTTIDPRWLVEFAPAFFKVSD-PTKLSKQKKQQ 1196
>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase| (EC 3.6.1.-) Length = 1168 Score = 78.6 bits (192), Expect = 2e-14 Identities = 40/93 (43%), Positives = 58/93 (62%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 I + +F + AR Y P ++HPSSAL+ PD+V+YH+LV+TTKEYM+ Sbjct: 1057 ITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQR--QPDWVIYHDLVMTTKEYMRE 1114 Query: 495 VSAVDPQWLAELGPMFFSVKDTDTSLLDHKKRQ 397 V+ +DP+WL EL P FF V +D + + +KRQ Sbjct: 1115 VTVIDPKWLVELAPRFFKV--SDPTKMSKRKRQ 1145
>PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22| (EC 3.6.1.-) Length = 1145 Score = 72.4 bits (176), Expect = 1e-12 Identities = 33/82 (40%), Positives = 51/82 (62%) Frame = -1 Query: 669 SAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVS 490 S +F N+A+ Y G +HPSS+LYG Y +YV+YH +VLT++EYM V+ Sbjct: 1027 SGFFMNAAKRDSQVGYKTINGGTEVGIHPSSSLYGKEY--EYVMYHSIVLTSREYMSQVT 1084 Query: 489 AVDPQWLAELGPMFFSVKDTDT 424 +++PQWL E+ P F+ D ++ Sbjct: 1085 SIEPQWLLEVAPHFYKAGDAES 1106
>DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase| C10F6.02c (EC 3.6.1.-) Length = 1168 Score = 69.7 bits (169), Expect = 8e-12 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = -1 Query: 675 ICSAYFHNSARLKGI-GEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQ 499 +CS YF N A+ G Y P ++HPS L+G ++V+YHEL+ T+KEYM Sbjct: 1053 LCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKA--AEWVIYHELIQTSKEYMH 1110 Query: 498 CVSAVDPQWLAELGPMFF 445 VS V+P+WL E+ P FF Sbjct: 1111 TVSTVNPKWLVEVAPTFF 1128
>DHX35_HUMAN (Q9H5Z1) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)| (DEAH box protein 35) Length = 703 Score = 65.5 bits (158), Expect = 1e-10 Identities = 31/77 (40%), Positives = 47/77 (61%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 I S +F N+AR G Y R+ H+HP+S LY P +V+Y+E++ T+K YM+ Sbjct: 610 IVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYA-EKPPRWVIYNEVIQTSKYYMRD 668 Query: 495 VSAVDPQWLAELGPMFF 445 V+A++ WL EL P F+ Sbjct: 669 VTAIESAWLLELAPHFY 685
>DHX15_SCHPO (O42945) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase prp43 (EC 3.6.1.-) Length = 735 Score = 65.5 bits (158), Expect = 1e-10 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGE-YVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQ 499 + S +F A+ G+ YV ++ LHPS GL TP++VVY+E VLTTK +++ Sbjct: 630 LVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSC---GLSVTPEWVVYNEFVLTTKSFIR 686 Query: 498 CVSAVDPQWLAELGPMFFSVKDTDTS 421 V+A+ P+WL EL P ++ + D D + Sbjct: 687 NVTAIRPEWLIELAPNYYDLDDFDNN 712
>DHX35_PONPY (Q5RBD4) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)| (DEAH box protein 35) Length = 720 Score = 65.5 bits (158), Expect = 1e-10 Identities = 31/77 (40%), Positives = 47/77 (61%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 I S +F N+AR G Y R+ H+HP+S LY P +V+Y+E++ T+K YM+ Sbjct: 610 IVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYA-EKPPRWVIYNEVIQTSKYYMRD 668 Query: 495 VSAVDPQWLAELGPMFF 445 V+A++ WL EL P F+ Sbjct: 669 VTAIESAWLLELAPHFY 685
>CDC28_SCHPO (Q10752) Putative ATP-dependent RNA helicase cdc28 (EC 3.6.1.-)| Length = 1055 Score = 62.4 bits (150), Expect = 1e-09 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGE-YVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQ 499 I + YF N+ARL G+ Y ++ ++HPSS++ P ++Y ELVLTTKEY + Sbjct: 963 ITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSV--AEKKPKVIIYFELVLTTKEYCR 1020 Query: 498 CVSAVDPQWLAELGPMFFSVKDTD 427 ++ + P+WL E+ P +F ++ + Sbjct: 1021 QITEIQPEWLLEISPHYFKPENIE 1044
>DHX16_CAEEL (O45244) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase| mog-4 (EC 3.6.1.-) (Sex determination protein mog-4) (Masculinization of germ line protein 4) Length = 1008 Score = 62.0 bits (149), Expect = 2e-09 Identities = 29/83 (34%), Positives = 50/83 (60%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 I + YF+N ++L G Y ++ H HP+S L+ TP +VVY ELV T+KE+M+ Sbjct: 908 ITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFE--ETPRWVVYFELVFTSKEFMRE 965 Query: 495 VSAVDPQWLAELGPMFFSVKDTD 427 +S ++ WL E+ P ++ ++ + Sbjct: 966 MSEIESGWLLEVAPHYYKGRELE 988
>DHX16_HUMAN (O60231) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase| DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent RNA helicase #3) Length = 1041 Score = 61.2 bits (147), Expect = 3e-09 Identities = 30/83 (36%), Positives = 51/83 (61%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 I + YF+++ARL G Y + +HP+S+L+ P +++YHELVLTTKE+M+ Sbjct: 943 ITAGYFYHTARLTRSG-YRTVKQQQTVFIHPNSSLFE--QQPRWLLYHELVLTTKEFMRQ 999 Query: 495 VSAVDPQWLAELGPMFFSVKDTD 427 V ++ WL E+ P ++ K+ + Sbjct: 1000 VLEIESSWLLEVAPHYYKAKELE 1022
>DHX16_PANTR (Q7YR39) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase| DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent RNA helicase #3) Length = 1044 Score = 61.2 bits (147), Expect = 3e-09 Identities = 30/83 (36%), Positives = 51/83 (61%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 I + YF+++ARL G Y + +HP+S+L+ P +++YHELVLTTKE+M+ Sbjct: 946 ITAGYFYHTARLTRSG-YRTVKQQQTVFIHPNSSLFE--QQPRWLLYHELVLTTKEFMRQ 1002 Query: 495 VSAVDPQWLAELGPMFFSVKDTD 427 V ++ WL E+ P ++ K+ + Sbjct: 1003 VLEIESSWLLEVAPHYYKAKELE 1025
>DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15) Length = 795 Score = 60.8 bits (146), Expect = 4e-09 Identities = 25/81 (30%), Positives = 48/81 (59%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 + + YF A L+ G Y+ ++ LHPS+ L + P++V+Y+E VLTTK Y++ Sbjct: 693 LVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL---DHKPEWVLYNEFVLTTKNYIRT 749 Query: 495 VSAVDPQWLAELGPMFFSVKD 433 + + P+WL ++ P ++ + + Sbjct: 750 CTDIKPEWLVKIAPQYYDMSN 770
>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15) (ATP-dependent RNA helicase #46) Length = 795 Score = 60.8 bits (146), Expect = 4e-09 Identities = 25/81 (30%), Positives = 48/81 (59%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 + + YF A L+ G Y+ ++ LHPS+ L + P++V+Y+E VLTTK Y++ Sbjct: 693 LVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVL---DHKPEWVLYNEFVLTTKNYIRT 749 Query: 495 VSAVDPQWLAELGPMFFSVKD 433 + + P+WL ++ P ++ + + Sbjct: 750 CTDIKPEWLVKIAPQYYDMSN 770
>DHX15_CAEEL (Q20875) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase F56D2.6 (EC 3.6.1.-) Length = 739 Score = 58.5 bits (140), Expect = 2e-08 Identities = 25/79 (31%), Positives = 48/79 (60%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 + + +F A L+ G YV ++ +LHPS+ L + P++ +Y+E VLTTK +++ Sbjct: 637 LVAGFFMQVAHLERSGHYVTVKDNQLVNLHPSTVL---DHKPEWALYNEFVLTTKNFIRT 693 Query: 495 VSAVDPQWLAELGPMFFSV 439 V+ V P+WL ++ P ++ + Sbjct: 694 VTDVRPEWLLQIAPQYYDL 712
>PRP43_YEAST (P53131) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43| (EC 3.6.1.-) (Helicase JA1) Length = 767 Score = 56.2 bits (134), Expect = 9e-08 Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Frame = -1 Query: 675 ICSAYFHNSARLK-GIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQ 499 + S +F A+ + G Y+ ++ +HPS+ L G+ ++V+Y+E VLT+K Y++ Sbjct: 652 LASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVL---GHDAEWVIYNEFVLTSKNYIR 708 Query: 498 CVSAVDPQWLAELGPMFFSVKD 433 V++V P+WL E+ P ++ + + Sbjct: 709 TVTSVRPEWLIEIAPAYYDLSN 730
>DHX15_ARATH (O22899) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase (EC 3.6.1.-) Length = 729 Score = 55.5 bits (132), Expect = 1e-07 Identities = 23/79 (29%), Positives = 47/79 (59%) Frame = -1 Query: 669 SAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVS 490 + YF A L+ G Y+ ++ HLHPS+ L + P++V+Y+E VLTT+ +++ V+ Sbjct: 626 AGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL---DHKPEWVIYNEYVLTTRNFIRTVT 682 Query: 489 AVDPQWLAELGPMFFSVKD 433 + +WL ++ ++ + + Sbjct: 683 DIRGEWLVDVAQHYYDLSN 701
>PRH1_SCHPO (Q03319) Probable ATP-dependent RNA helicase prh1 (EC 3.6.1.-)| Length = 719 Score = 53.9 bits (128), Expect = 4e-07 Identities = 28/80 (35%), Positives = 43/80 (53%) Frame = -1 Query: 669 SAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVS 490 S Y N+A L G Y +HPSS+L+G + ++YHELV TTK Y++ VS Sbjct: 642 SGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKV--EAIMYHELVFTTKSYVRGVS 699 Query: 489 AVDPQWLAELGPMFFSVKDT 430 ++ WL + P + + + T Sbjct: 700 SIRSNWLNAVAPHYLARRST 719
>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)| (DEAH box protein 33) Length = 707 Score = 52.0 bits (123), Expect = 2e-06 Identities = 29/80 (36%), Positives = 41/80 (51%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 + + F ++A L+ G Y P +HPSS L+ P VVY EL+ T K YM+ Sbjct: 624 LAHSLFMSTAELQPDGTYATTDTHQPVAIHPSSVLFHC--KPACVVYTELLYTNKCYMRD 681 Query: 495 VSAVDPQWLAELGPMFFSVK 436 + +D QWL E P +F K Sbjct: 682 LCVIDAQWLYEAAPEYFRRK 701
>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)| (DEAH box protein 33) Length = 698 Score = 50.8 bits (120), Expect = 4e-06 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Frame = -1 Query: 672 CSAY--FHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQ 499 C A+ F N+A L+ G Y P +HPSS L+ P VVY L+ T K YM+ Sbjct: 614 CMAHSLFMNTAELQTDGTYATTDTHQPVAIHPSSVLFHC--KPACVVYTSLLYTNKCYMR 671 Query: 498 CVSAVDPQWLAELGPMFFSVK 436 + VD +WL E P +F K Sbjct: 672 DLCVVDAEWLYEAAPDYFRRK 692
>DHX37_HUMAN (Q8IY37) Probable ATP-dependent RNA helicase DHX37 (EC 3.6.1.-) (DEAH| box protein 37) Length = 1157 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/51 (47%), Positives = 34/51 (66%) Frame = -1 Query: 600 PCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAELGPMF 448 P +HPSS L+ P++VVY E+V TTK YM+ VS+V+ QW+ L P + Sbjct: 963 PVFIHPSSVLFK--ELPEFVVYQEIVETTKMYMKGVSSVEVQWIPALLPSY 1011
>DHX35_CAEEL (Q9BKQ8) Probable ATP-dependent RNA helicase DHX35 homolog (EC| 3.6.1.-) Length = 732 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/92 (20%), Positives = 50/92 (54%) Frame = -1 Query: 675 ICSAYFHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQC 496 + + +F +A+ G+Y+ + P +++ S++ P +V++ E++ ++ ++ Sbjct: 632 LVTGFFSQAAQYHYTGKYMTVKESFPFNMYKGSSIMFKKDYPKWVIFTEVM---QDSIRD 688 Query: 495 VSAVDPQWLAELGPMFFSVKDTDTSLLDHKKR 400 V+ ++P+WL EL P ++ T+ L + + R Sbjct: 689 VTVIEPEWLYELAPHYYEF-GTEGELAEKRMR 719
>DHR2_YEAST (P36009) Probable ATP-dependent RNA helicase DHR2 (EC 3.6.1.-)| (DEAH box RNA helicase DHR2) (Helicase JA2) Length = 735 Score = 38.5 bits (88), Expect = 0.019 Identities = 21/55 (38%), Positives = 29/55 (52%) Frame = -1 Query: 624 YVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAEL 460 Y G P +HPSS L+ P ++Y E V TTK Y + VS ++ WL E+ Sbjct: 666 YRTVSTGEPISIHPSSMLFMNKSCPG-IMYTEYVFTTKGYARNVSRIELSWLQEV 719
>YKQ0_CAEEL (P34305) Putative ATP-dependent RNA helicase C06E1.10 in chromosome| III (EC 3.6.1.-) Length = 1148 Score = 34.3 bits (77), Expect = 0.35 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = -1 Query: 552 PDYVVYHELV-LTTKEYMQCVSAVDPQWLAELGPMFFSVKDTD 427 P++V+Y ELV + K+ M V AVD +WL+ L + + + D Sbjct: 955 PEFVIYQELVQVNEKKLMTSVCAVDKEWLSRLAESYCNYGEQD 997
>PRP2_YEAST (P20095) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2| (EC 3.6.1.-) Length = 876 Score = 34.3 bits (77), Expect = 0.35 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Frame = -1 Query: 606 GMPCHLHPSSALY-----GLGYTPDYVVYHELVLTTKEYMQ-CVSAVDPQWLAELGPMFF 445 G+ +HP+S L+ YV+Y +L+LT+KE+++ C+ +WL ++ P F Sbjct: 804 GLNVSVHPTSILFVNHKEKAQRPSKYVLYQQLMLTSKEFIRDCLVIPKEEWLIDMVPQIF 863
>KZ_DROME (O46072) Probable ATP-dependent RNA helicase kurz (EC 3.6.1.-)| Length = 1192 Score = 32.7 bits (73), Expect = 1.0 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%) Frame = -1 Query: 600 PCHLHPSSALYGLGYTPDYVVYHELVL-----TTKEYMQCVSAVDPQWLAELGPMFFSVK 436 P LH SS L P++V+Y E +TK +++ ++A++P+WL P+ +++ Sbjct: 988 PAFLHVSSVLRQKA--PEWVIYQEAYELQNGDSTKMFIRGITAIEPEWLLLYVPLLCNIR 1045 Query: 435 D 433 + Sbjct: 1046 E 1046
>VH21_SFVKA (Q9Q909) Probable host range protein 2-1| Length = 158 Score = 31.2 bits (69), Expect = 3.0 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = -1 Query: 531 ELVLTTKEYMQCVSAVDPQWLAELGPMFFSVKDTDTSL-LDHK 406 +L L TK+ ++ V ++P+W+ E+ PM+ + L LD+K Sbjct: 34 KLKLNTKKSVRFVVLLEPEWIDEIKPMYMKLNGVSVDLKLDYK 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,844,043 Number of Sequences: 219361 Number of extensions: 1766112 Number of successful extensions: 5027 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4868 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5009 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
