>TRI46_HUMAN (Q7Z4K8) Tripartite motif protein 46 (Tripartite, fibronectin|
           type-III and C-terminal SPRY motif protein)
          Length = 759

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -3

Query: 635 TNNQCEAMALRVVKQEE-VWDGSDPVDYSTTPPKSPESNSDR-AWRMLNKPLQKSGSENF 462
           T+N C+A A  V+ Q+  +  G DP    T+P  +P + S R + R L KP         
Sbjct: 49  THNVCQACAREVLGQQGYIGHGGDPSSEPTSPASTPSTRSPRLSRRTLPKP--------- 99

Query: 461 GDVLERRNPLAFGHFANHPPGGSTPNVNDLP 369
            D L+R     FG +     G   P V   P
Sbjct: 100 -DRLDRLLKSGFGTYPGRKRGALHPQVIMFP 129

>YC66L_SYNY3 (Q55823) Ycf66-like protein|
          Length = 337

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -3

Query: 587 EVWDGSDPVDYSTTPPKSPESNSDRAWRMLNKPLQKSGSENFGDVLERRNPLAFGHFANH 408
           +VWD   P     T    PE+ +D A     +P     +++FGD  ER  P     + + 
Sbjct: 212 DVWDDPTPSRRPPTRRPRPEAGNDPAPSRRPRPSNNPPNDSFGDRPERNAPRNARPYEDE 271

Query: 407 PP 402
           PP
Sbjct: 272 PP 273

>TRI46_MOUSE (Q7TNM2) Tripartite motif protein 46 (Tripartite, fibronectin|
           type-III and C-terminal SPRY motif protein)
          Length = 759

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -3

Query: 635 TNNQCEAMALRVVKQEE-VWDGSDPVDYSTTPPKSPESNSDR-AWRMLNKPLQKSGSENF 462
           T+N C+A A  V+ Q+  +  G DP    T+P  +P + S R + R L KP         
Sbjct: 49  THNVCQACAREVLGQQGYIGHGGDPSSEPTSPASTPSTRSPRLSRRTLPKP--------- 99

Query: 461 GDVLERRNPLAFGHFANHPPGGSTP 387
            D L+R     FG +     G   P
Sbjct: 100 -DRLDRLLKSGFGTYPGRKRGALHP 123

>PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101|
          Length = 613

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 19/61 (31%), Positives = 22/61 (36%)
 Frame = -3

Query: 578 DGSDPVDYSTTPPKSPESNSDRAWRMLNKPLQKSGSENFGDVLERRNPLAFGHFANHPPG 399
           D    ++Y   PPK P S  D   +M                  R N  AF H A HP G
Sbjct: 164 DPQGGLNYRPQPPKGPSSYYDHTGQM------------------RTNAAAFAHQAGHPSG 205

Query: 398 G 396
           G
Sbjct: 206 G 206

>PYRC_DEIRA (Q9RVC3) Dihydroorotase (EC 3.5.2.3) (DHOase)|
          Length = 416

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 19/118 (16%)
 Frame = -1

Query: 625 NAKPWHLGW*NKKKYGMVQIQWITVQRHPKAQRA-----------TLTGHGGCLTSPCRR 479
           NA+   LG    K  GMV    I+V     A RA           +L   G    +   R
Sbjct: 151 NARVLRLGMEYAKSLGMV----ISVHAEDDALRAGGVMNEGPVSESLGLPGNPAAAAAAR 206

Query: 478 VAVKTLVMCLNG---EIHWL-----LVISRTTHREGRPLTSMICPYDFPLTEKDIRAY 329
           VA    ++ L G    +  L     L I R   R G P+T  +CP+   LT++ +R +
Sbjct: 207 VARDMEIVALTGARLHVQHLSTARELDIVRDAKRRGLPVTCEVCPHHLDLTDESLRTF 264

>PACC_FUSOX (Q870A3) pH-response transcription factor pacC/RIM101|
          Length = 609

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 19/61 (31%), Positives = 22/61 (36%)
 Frame = -3

Query: 578 DGSDPVDYSTTPPKSPESNSDRAWRMLNKPLQKSGSENFGDVLERRNPLAFGHFANHPPG 399
           D    ++Y   PPK P S  D   +M                  R N  AF H A HP G
Sbjct: 161 DPQGGLNYRPQPPKGPSSYYDHTGQM------------------RTNAAAFAHQAGHPSG 202

Query: 398 G 396
           G
Sbjct: 203 G 203

>VMTZ_LAMBD (P03731) Minor tail protein Z (GpZ)|
          Length = 192

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = -1

Query: 586 KYGMVQIQWITVQRHPKAQRATLTGHGGCLTSPCRRVAVKTLVMCLNGEIHWLLVISRTT 407
           K G  ++     +R  K QR++L G G  L    RR+    +    NG  H   V+ R  
Sbjct: 84  KLGNARVVLSRRRRRKKGQRSSLKGGGSVLVVGNRRIPGAFIQQLKNGRWH---VMQRVA 140

Query: 406 HREGRPLTSMICPYDFPLT 350
            +   P+  +  P   PLT
Sbjct: 141 GKNRYPIDVVKIPMAVPLT 159

>SHAN2_HUMAN (Q9UPX8) SH3 and multiple ankyrin repeat domains protein 2 (Shank2)|
          Length = 1253

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 569  DPVDYSTTPPKSPESNSDRAWRMLNKPLQKSGSENFGDVLERRNPLAFGHFAN 411
            + VD    PP +P      A   + K LQ   S+ +GDV E ++P+  G  AN
Sbjct: 974  EDVDSFVIPPPAPPPPPGSAQPGMAKVLQPRTSKLWGDVTEIKSPILSGPKAN 1026

>GFRA1_RAT (Q62997) GDNF family receptor alpha-1 precursor (GFR-alpha-1) (GDNF|
           receptor alpha) (GDNFR-alpha) (TGF-beta-related
           neurotrophic factor receptor 1) (RET ligand 1)
          Length = 468

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 578 DGSDPVDYSTTPP-KSPESNSDRAWRMLNKPLQKSGSEN 465
           +GSD   +   PP ++  + +  A+R+ NKPL  +GSEN
Sbjct: 347 NGSDVTMWQPAPPVQTTTATTTTAFRVKNKPLGPAGSEN 385


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,764,578
Number of Sequences: 219361
Number of extensions: 2562088
Number of successful extensions: 6206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6202
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)