ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13p03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466918.1| Oryza sativa (japonica cultivar-group), mRNA 367 3e-98
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 367 3e-98
3dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic D... 367 3e-98
4dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic D... 367 3e-98
5dbj|AK101737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 367 3e-98
6dbj|AK106596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 3e-77
7gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, com... 44 0.61
8gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, comp... 44 0.61
9dbj|AK032760.1| Mus musculus 12 days embryo male wolffian duct i... 44 0.61
10dbj|AB063124.1| Coturnix japonica DNA, microsatellite locus GUJ0056 42 2.4
11gb|AC168049.2| Mus musculus BAC clone RP23-246L6 from chromosome... 40 9.5
12emb|CR450793.12| Zebrafish DNA sequence from clone DKEY-48M5 in ... 40 9.5
13gb|AC125110.4| Mus musculus BAC clone RP24-235E14 from chromosom... 40 9.5
14emb|AL161798.23| Human DNA sequence from clone RP11-108M11 on ch... 40 9.5
15emb|AL844589.3| Mouse DNA sequence from clone RP23-139C9 on chro... 40 9.5
16gb|AC158232.2| Mus musculus BAC clone RP24-200M15 from chromosom... 40 9.5
17gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-3... 40 9.5
18gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-30... 40 9.5
19gb|AC003672.3| Arabidopsis thaliana chromosome 2 clone F16B22 ma... 40 9.5
20gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana... 40 9.5
21gb|AF067845.1|AF067845 Homo sapiens clone P1-4248, complete sequ... 40 9.5
22gb|AC162939.6| Mus musculus BAC clone RP23-97G12 from chromosome... 40 9.5
23gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 9.5
24gb|AC110288.10| Homo sapiens chromosome 8, clone CTD-2281E23, co... 40 9.5

>ref|XM_466918.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1761

 Score =  367 bits (185), Expect = 3e-98
 Identities = 516/619 (83%), Gaps = 8/619 (1%)
 Strand = Plus / Minus

                                                                        
Query: 78   aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
            |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 1375 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 1316

                                                                        
Query: 138  ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
              ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 1315 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 1256

                                                                        
Query: 198  ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
            ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 1255 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 1196

                                                                        
Query: 258  gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
            |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 1195 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 1136

                                                                        
Query: 315  gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
            | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 1135 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 1076

                                                                        
Query: 375  atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434
            ||||| ||| || || || ||||||   ||||| ||||| || || ||||||||||| ||
Sbjct: 1075 atcat-gacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 1017

                                                                        
Query: 435  tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494
            ||| ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| |||||
Sbjct: 1016 tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 957

                                                                        
Query: 495  gttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtact 554
            | | ||||||||||||||||  ||||||||||||||| ||||||||| ||||  || | |
Sbjct: 956  gctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcatt 897

                                                                        
Query: 555  gtaatccactggatctgaaccatcccatacttcttcttgtttcaccaccctaagtgccat 614
            |||||||||   |||||| |||||||||| ||| |||  | |||||| ||||| ||||||
Sbjct: 896  gtaatccaccaaatctgagccatcccatatttc-tctgctatcacca-cctaattgccat 839

                                                                        
Query: 615  ggcttcgcattgattattggttccgtcatatcttgtaataagataagctgttgcacgcat 674
            || || ||||  |||||| ||||| ||||| ||||| || |||| || |||||||||| |
Sbjct: 838  ggtttggcatcaattatt-gttccatcataccttgtgatcagat-agttgttgcacgcgt 781

                               
Query: 675  cgattcttgggtatccagg 693
            ||||| |||||||||||||
Sbjct: 780  cgatttttgggtatccagg 762



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  367 bits (185), Expect = 3e-98
 Identities = 516/619 (83%), Gaps = 8/619 (1%)
 Strand = Plus / Minus

                                                                            
Query: 78       aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
                |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 25456299 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 25456240

                                                                            
Query: 138      ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
                  ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 25456239 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 25456180

                                                                            
Query: 198      ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
                ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 25456179 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 25456120

                                                                            
Query: 258      gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
                |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 25456119 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 25456060

                                                                            
Query: 315      gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
                | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 25456059 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 25456000

                                                                            
Query: 375      atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434
                ||||| ||| || || || ||||||   ||||| ||||| || || ||||||||||| ||
Sbjct: 25455999 atcat-gacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 25455941

                                                                            
Query: 435      tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494
                ||| ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| |||||
Sbjct: 25455940 tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 25455881

                                                                            
Query: 495      gttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtact 554
                | | ||||||||||||||||  ||||||||||||||| ||||||||| ||||  || | |
Sbjct: 25455880 gctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcatt 25455821

                                                                            
Query: 555      gtaatccactggatctgaaccatcccatacttcttcttgtttcaccaccctaagtgccat 614
                |||||||||   |||||| |||||||||| ||| |||  | |||||| ||||| ||||||
Sbjct: 25455820 gtaatccaccaaatctgagccatcccatatttc-tctgctatcacca-cctaattgccat 25455763

                                                                            
Query: 615      ggcttcgcattgattattggttccgtcatatcttgtaataagataagctgttgcacgcat 674
                || || ||||  |||||| ||||| ||||| ||||| || |||| || |||||||||| |
Sbjct: 25455762 ggtttggcatcaattatt-gttccatcataccttgtgatcagat-agttgttgcacgcgt 25455705

                                   
Query: 675      cgattcttgggtatccagg 693
                ||||| |||||||||||||
Sbjct: 25455704 cgatttttgggtatccagg 25455686



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>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1643_A10
          Length = 130037

 Score =  367 bits (185), Expect = 3e-98
 Identities = 516/619 (83%), Gaps = 8/619 (1%)
 Strand = Plus / Minus

                                                                          
Query: 78     aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
              |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 111961 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 111902

                                                                          
Query: 138    ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
                ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 111901 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 111842

                                                                          
Query: 198    ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
              ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 111841 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 111782

                                                                          
Query: 258    gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
              |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 111781 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 111722

                                                                          
Query: 315    gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
              | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 111721 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 111662

                                                                          
Query: 375    atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434
              ||||| ||| || || || ||||||   ||||| ||||| || || ||||||||||| ||
Sbjct: 111661 atcat-gacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 111603

                                                                          
Query: 435    tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494
              ||| ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| |||||
Sbjct: 111602 tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 111543

                                                                          
Query: 495    gttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtact 554
              | | ||||||||||||||||  ||||||||||||||| ||||||||| ||||  || | |
Sbjct: 111542 gctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcatt 111483

                                                                          
Query: 555    gtaatccactggatctgaaccatcccatacttcttcttgtttcaccaccctaagtgccat 614
              |||||||||   |||||| |||||||||| ||| |||  | |||||| ||||| ||||||
Sbjct: 111482 gtaatccaccaaatctgagccatcccatatttc-tctgctatcacca-cctaattgccat 111425

                                                                          
Query: 615    ggcttcgcattgattattggttccgtcatatcttgtaataagataagctgttgcacgcat 674
              || || ||||  |||||| ||||| ||||| ||||| || |||| || |||||||||| |
Sbjct: 111424 ggtttggcatcaattatt-gttccatcataccttgtgatcagat-agttgttgcacgcgt 111367

                                 
Query: 675    cgattcttgggtatccagg 693
              ||||| |||||||||||||
Sbjct: 111366 cgatttttgggtatccagg 111348



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>dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1626_B09
          Length = 58749

 Score =  367 bits (185), Expect = 3e-98
 Identities = 516/619 (83%), Gaps = 8/619 (1%)
 Strand = Plus / Minus

                                                                       
Query: 78  aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
           |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 849 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 790

                                                                       
Query: 138 ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
             ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 789 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 730

                                                                       
Query: 198 ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
           ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 729 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 670

                                                                       
Query: 258 gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
           |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 669 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 610

                                                                       
Query: 315 gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
           | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 609 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 550

                                                                       
Query: 375 atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434
           ||||| ||| || || || ||||||   ||||| ||||| || || ||||||||||| ||
Sbjct: 549 atcat-gacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 491

                                                                       
Query: 435 tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494
           ||| ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| |||||
Sbjct: 490 tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 431

                                                                       
Query: 495 gttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtact 554
           | | ||||||||||||||||  ||||||||||||||| ||||||||| ||||  || | |
Sbjct: 430 gctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcatt 371

                                                                       
Query: 555 gtaatccactggatctgaaccatcccatacttcttcttgtttcaccaccctaagtgccat 614
           |||||||||   |||||| |||||||||| ||| |||  | |||||| ||||| ||||||
Sbjct: 370 gtaatccaccaaatctgagccatcccatatttc-tctgctatcacca-cctaattgccat 313

                                                                       
Query: 615 ggcttcgcattgattattggttccgtcatatcttgtaataagataagctgttgcacgcat 674
           || || ||||  |||||| ||||| ||||| ||||| || |||| || |||||||||| |
Sbjct: 312 ggtttggcatcaattatt-gttccatcataccttgtgatcagat-agttgttgcacgcgt 255

                              
Query: 675 cgattcttgggtatccagg 693
           ||||| |||||||||||||
Sbjct: 254 cgatttttgggtatccagg 236



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>dbj|AK101737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061I23, full
            insert sequence
          Length = 1760

 Score =  367 bits (185), Expect = 3e-98
 Identities = 516/619 (83%), Gaps = 8/619 (1%)
 Strand = Plus / Minus

                                                                        
Query: 78   aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
            |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 1374 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 1315

                                                                        
Query: 138  ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
              ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 1314 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 1255

                                                                        
Query: 198  ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
            ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 1254 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 1195

                                                                        
Query: 258  gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
            |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 1194 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 1135

                                                                        
Query: 315  gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
            | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 1134 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 1075

                                                                        
Query: 375  atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434
            ||||| ||| || || || ||||||   ||||| ||||| || || ||||||||||| ||
Sbjct: 1074 atcat-gacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 1016

                                                                        
Query: 435  tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494
            ||| ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| |||||
Sbjct: 1015 tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 956

                                                                        
Query: 495  gttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtact 554
            | | ||||||||||||||||  ||||||||||||||| ||||||||| ||||  || | |
Sbjct: 955  gctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcatt 896

                                                                        
Query: 555  gtaatccactggatctgaaccatcccatacttcttcttgtttcaccaccctaagtgccat 614
            |||||||||   |||||| |||||||||| ||| |||  | |||||| ||||| ||||||
Sbjct: 895  gtaatccaccaaatctgagccatcccatatttc-tctgctatcacca-cctaattgccat 838

                                                                        
Query: 615  ggcttcgcattgattattggttccgtcatatcttgtaataagataagctgttgcacgcat 674
            || || ||||  |||||| ||||| ||||| ||||| || |||| || |||||||||| |
Sbjct: 837  ggtttggcatcaattatt-gttccatcataccttgtgatcagat-agttgttgcacgcgt 780

                               
Query: 675  cgattcttgggtatccagg 693
            ||||| |||||||||||||
Sbjct: 779  cgatttttgggtatccagg 761



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>dbj|AK106596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A06, full
           insert sequence
          Length = 2071

 Score =  297 bits (150), Expect = 3e-77
 Identities = 369/440 (83%), Gaps = 4/440 (0%)
 Strand = Plus / Minus

                                                                       
Query: 78  aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
           |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 441 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 382

                                                                       
Query: 138 ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
             ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 381 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 322

                                                                       
Query: 198 ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
           ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 321 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 262

                                                                       
Query: 258 gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
           |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 261 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 202

                                                                       
Query: 315 gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
           | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 201 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 142

                                                                       
Query: 375 atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434
           |||| |||| || || || ||||||   ||||| ||||| || || ||||||||||| ||
Sbjct: 141 atca-tgacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 83

                                                                       
Query: 435 tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494
           ||| ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| |||||
Sbjct: 82  tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 23

                               
Query: 495 gttaagcatcctccatgccc 514
           | | ||||||||||||||||
Sbjct: 22  gctgagcatcctccatgccc 3



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>gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, complete sequence
          Length = 168156

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 154    acctgtagttcaggtagagttc 175
              ||||||||||||||||||||||
Sbjct: 104786 acctgtagttcaggtagagttc 104807



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>gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, complete sequence
          Length = 157594

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 154  acctgtagttcaggtagagttc 175
            ||||||||||||||||||||||
Sbjct: 3593 acctgtagttcaggtagagttc 3614



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>dbj|AK032760.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720430F13 product:unclassifiable, full insert
           sequence
          Length = 3075

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 154 acctgtagttcaggtagagttc 175
           ||||||||||||||||||||||
Sbjct: 319 acctgtagttcaggtagagttc 340



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>dbj|AB063124.1| Coturnix japonica DNA, microsatellite locus GUJ0056
          Length = 183

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 480 cttctgcaggggcttgttaag 500
           |||||||||||||||||||||
Sbjct: 132 cttctgcaggggcttgttaag 112



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>gb|AC168049.2| Mus musculus BAC clone RP23-246L6 from chromosome 10, complete sequence
          Length = 229657

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    tctgatgtccttctctgtca 354
              ||||||||||||||||||||
Sbjct: 113433 tctgatgtccttctctgtca 113452



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>emb|CR450793.12| Zebrafish DNA sequence from clone DKEY-48M5 in linkage group 10,
             complete sequence
          Length = 130542

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    ctcttatcctcttcttcatc 112
             ||||||||||||||||||||
Sbjct: 45702 ctcttatcctcttcttcatc 45683



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>gb|AC125110.4| Mus musculus BAC clone RP24-235E14 from chromosome 18, complete sequence
          Length = 187634

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 517    tcagagttgctctctgggct 536
              ||||||||||||||||||||
Sbjct: 157392 tcagagttgctctctgggct 157411



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>emb|AL161798.23| Human DNA sequence from clone RP11-108M11 on chromosome 10 Contains the
             3' end of a novel gene  (FLJ37306), a novel gene and a
             ribosomal protein S27 (metallopanstimulin 1) (RPS27)
             pseudogene, complete sequence
          Length = 134438

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 90    ctcctcttatcctcttcttcatcaactg 117
             ||||| |||||||||||||||| |||||
Sbjct: 79196 ctcctgttatcctcttcttcattaactg 79169



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>emb|AL844589.3| Mouse DNA sequence from clone RP23-139C9 on chromosome 4, complete
             sequence
          Length = 162642

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    gttcagaactagctccatct 91
             ||||||||||||||||||||
Sbjct: 66593 gttcagaactagctccatct 66574



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>gb|AC158232.2| Mus musculus BAC clone RP24-200M15 from chromosome 12, complete
             sequence
          Length = 187225

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    ctcctcttatcctcttcttc 109
             ||||||||||||||||||||
Sbjct: 31475 ctcctcttatcctcttcttc 31456



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>gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-337K7, complete sequence
          Length = 219769

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 334    ctctgatgtccttctctgtcaatg 357
              ||||||| ||||||||||||||||
Sbjct: 104093 ctctgatttccttctctgtcaatg 104070



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>gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-301H20, complete sequence
          Length = 213462

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 334    ctctgatgtccttctctgtcaatg 357
              ||||||| ||||||||||||||||
Sbjct: 208654 ctctgatttccttctctgtcaatg 208631



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>gb|AC003672.3| Arabidopsis thaliana chromosome 2 clone F16B22 map m336, complete
             sequence
          Length = 109375

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    aaattcgattgctgatgaaa 30
             ||||||||||||||||||||
Sbjct: 78227 aaattcgattgctgatgaaa 78246



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>gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I,
             complete sequence
          Length = 98630

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    ttatcctcttcttcatcaac 115
             ||||||||||||||||||||
Sbjct: 91584 ttatcctcttcttcatcaac 91603



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>gb|AF067845.1|AF067845 Homo sapiens clone P1-4248, complete sequence
          Length = 108932

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   actgccactcttctgcaggg 490
             ||||||||||||||||||||
Sbjct: 17766 actgccactcttctgcaggg 17747



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>gb|AC162939.6| Mus musculus BAC clone RP23-97G12 from chromosome 10, complete sequence
          Length = 247228

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   tctgatgtccttctctgtca 354
             ||||||||||||||||||||
Sbjct: 26105 tctgatgtccttctctgtca 26124



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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    accaaaagcaatgttcggga 327
              ||||||||||||||||||||
Sbjct: 548144 accaaaagcaatgttcggga 548125



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>gb|AC110288.10| Homo sapiens chromosome 8, clone CTD-2281E23, complete sequence
          Length = 102752

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   actgccactcttctgcaggg 490
             ||||||||||||||||||||
Sbjct: 94429 actgccactcttctgcaggg 94410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,079,139
Number of Sequences: 3902068
Number of extensions: 6079139
Number of successful extensions: 130155
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130029
Number of HSP's gapped (non-prelim): 109
length of query: 694
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 671
effective length of database: 17,143,297,704
effective search space: 11503152759384
effective search space used: 11503152759384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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