Clone Name | rbasd13p03 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_466918.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1761 Score = 367 bits (185), Expect = 3e-98 Identities = 516/619 (83%), Gaps = 8/619 (1%) Strand = Plus / Minus Query: 78 aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137 ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct: 1375 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 1316 Query: 138 ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197 ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| ||| Sbjct: 1315 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 1256 Query: 198 ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257 ||||| ||||| || ||| ||||||| || |||||||| | | ||||||| || Sbjct: 1255 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 1196 Query: 258 gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314 |||||||||||||| || ||||| | |||||||||||||||||||| |||||||||| Sbjct: 1195 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 1136 Query: 315 gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374 | |||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||| Sbjct: 1135 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 1076 Query: 375 atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434 ||||| ||| || || || |||||| ||||| ||||| || || ||||||||||| || Sbjct: 1075 atcat-gacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 1017 Query: 435 tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494 ||| ||||| ||||||||||| || ||||| |||||| || || ||||| ||| ||||| Sbjct: 1016 tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 957 Query: 495 gttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtact 554 | | |||||||||||||||| ||||||||||||||| ||||||||| |||| || | | Sbjct: 956 gctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcatt 897 Query: 555 gtaatccactggatctgaaccatcccatacttcttcttgtttcaccaccctaagtgccat 614 ||||||||| |||||| |||||||||| ||| ||| | |||||| ||||| |||||| Sbjct: 896 gtaatccaccaaatctgagccatcccatatttc-tctgctatcacca-cctaattgccat 839 Query: 615 ggcttcgcattgattattggttccgtcatatcttgtaataagataagctgttgcacgcat 674 || || |||| |||||| ||||| ||||| ||||| || |||| || |||||||||| | Sbjct: 838 ggtttggcatcaattatt-gttccatcataccttgtgatcagat-agttgttgcacgcgt 781 Query: 675 cgattcttgggtatccagg 693 ||||| ||||||||||||| Sbjct: 780 cgatttttgggtatccagg 762
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 367 bits (185), Expect = 3e-98 Identities = 516/619 (83%), Gaps = 8/619 (1%) Strand = Plus / Minus Query: 78 aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137 ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct: 25456299 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 25456240 Query: 138 ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197 ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| ||| Sbjct: 25456239 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 25456180 Query: 198 ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257 ||||| ||||| || ||| ||||||| || |||||||| | | ||||||| || Sbjct: 25456179 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 25456120 Query: 258 gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314 |||||||||||||| || ||||| | |||||||||||||||||||| |||||||||| Sbjct: 25456119 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 25456060 Query: 315 gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374 | |||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||| Sbjct: 25456059 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 25456000 Query: 375 atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434 ||||| ||| || || || |||||| ||||| ||||| || || ||||||||||| || Sbjct: 25455999 atcat-gacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 25455941 Query: 435 tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494 ||| ||||| ||||||||||| || ||||| |||||| || || ||||| ||| ||||| Sbjct: 25455940 tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 25455881 Query: 495 gttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtact 554 | | |||||||||||||||| ||||||||||||||| ||||||||| |||| || | | Sbjct: 25455880 gctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcatt 25455821 Query: 555 gtaatccactggatctgaaccatcccatacttcttcttgtttcaccaccctaagtgccat 614 ||||||||| |||||| |||||||||| ||| ||| | |||||| ||||| |||||| Sbjct: 25455820 gtaatccaccaaatctgagccatcccatatttc-tctgctatcacca-cctaattgccat 25455763 Query: 615 ggcttcgcattgattattggttccgtcatatcttgtaataagataagctgttgcacgcat 674 || || |||| |||||| ||||| ||||| ||||| || |||| || |||||||||| | Sbjct: 25455762 ggtttggcatcaattatt-gttccatcataccttgtgatcagat-agttgttgcacgcgt 25455705 Query: 675 cgattcttgggtatccagg 693 ||||| ||||||||||||| Sbjct: 25455704 cgatttttgggtatccagg 25455686
>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1643_A10 Length = 130037 Score = 367 bits (185), Expect = 3e-98 Identities = 516/619 (83%), Gaps = 8/619 (1%) Strand = Plus / Minus Query: 78 aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137 ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct: 111961 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 111902 Query: 138 ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197 ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| ||| Sbjct: 111901 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 111842 Query: 198 ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257 ||||| ||||| || ||| ||||||| || |||||||| | | ||||||| || Sbjct: 111841 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 111782 Query: 258 gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314 |||||||||||||| || ||||| | |||||||||||||||||||| |||||||||| Sbjct: 111781 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 111722 Query: 315 gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374 | |||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||| Sbjct: 111721 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 111662 Query: 375 atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434 ||||| ||| || || || |||||| ||||| ||||| || || ||||||||||| || Sbjct: 111661 atcat-gacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 111603 Query: 435 tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494 ||| ||||| ||||||||||| || ||||| |||||| || || ||||| ||| ||||| Sbjct: 111602 tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 111543 Query: 495 gttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtact 554 | | |||||||||||||||| ||||||||||||||| ||||||||| |||| || | | Sbjct: 111542 gctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcatt 111483 Query: 555 gtaatccactggatctgaaccatcccatacttcttcttgtttcaccaccctaagtgccat 614 ||||||||| |||||| |||||||||| ||| ||| | |||||| ||||| |||||| Sbjct: 111482 gtaatccaccaaatctgagccatcccatatttc-tctgctatcacca-cctaattgccat 111425 Query: 615 ggcttcgcattgattattggttccgtcatatcttgtaataagataagctgttgcacgcat 674 || || |||| |||||| ||||| ||||| ||||| || |||| || |||||||||| | Sbjct: 111424 ggtttggcatcaattatt-gttccatcataccttgtgatcagat-agttgttgcacgcgt 111367 Query: 675 cgattcttgggtatccagg 693 ||||| ||||||||||||| Sbjct: 111366 cgatttttgggtatccagg 111348
>dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1626_B09 Length = 58749 Score = 367 bits (185), Expect = 3e-98 Identities = 516/619 (83%), Gaps = 8/619 (1%) Strand = Plus / Minus Query: 78 aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137 ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct: 849 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 790 Query: 138 ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197 ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| ||| Sbjct: 789 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 730 Query: 198 ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257 ||||| ||||| || ||| ||||||| || |||||||| | | ||||||| || Sbjct: 729 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 670 Query: 258 gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314 |||||||||||||| || ||||| | |||||||||||||||||||| |||||||||| Sbjct: 669 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 610 Query: 315 gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374 | |||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||| Sbjct: 609 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 550 Query: 375 atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434 ||||| ||| || || || |||||| ||||| ||||| || || ||||||||||| || Sbjct: 549 atcat-gacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 491 Query: 435 tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494 ||| ||||| ||||||||||| || ||||| |||||| || || ||||| ||| ||||| Sbjct: 490 tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 431 Query: 495 gttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtact 554 | | |||||||||||||||| ||||||||||||||| ||||||||| |||| || | | Sbjct: 430 gctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcatt 371 Query: 555 gtaatccactggatctgaaccatcccatacttcttcttgtttcaccaccctaagtgccat 614 ||||||||| |||||| |||||||||| ||| ||| | |||||| ||||| |||||| Sbjct: 370 gtaatccaccaaatctgagccatcccatatttc-tctgctatcacca-cctaattgccat 313 Query: 615 ggcttcgcattgattattggttccgtcatatcttgtaataagataagctgttgcacgcat 674 || || |||| |||||| ||||| ||||| ||||| || |||| || |||||||||| | Sbjct: 312 ggtttggcatcaattatt-gttccatcataccttgtgatcagat-agttgttgcacgcgt 255 Query: 675 cgattcttgggtatccagg 693 ||||| ||||||||||||| Sbjct: 254 cgatttttgggtatccagg 236
>dbj|AK101737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061I23, full insert sequence Length = 1760 Score = 367 bits (185), Expect = 3e-98 Identities = 516/619 (83%), Gaps = 8/619 (1%) Strand = Plus / Minus Query: 78 aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137 ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct: 1374 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 1315 Query: 138 ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197 ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| ||| Sbjct: 1314 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 1255 Query: 198 ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257 ||||| ||||| || ||| ||||||| || |||||||| | | ||||||| || Sbjct: 1254 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 1195 Query: 258 gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314 |||||||||||||| || ||||| | |||||||||||||||||||| |||||||||| Sbjct: 1194 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 1135 Query: 315 gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374 | |||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||| Sbjct: 1134 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 1075 Query: 375 atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434 ||||| ||| || || || |||||| ||||| ||||| || || ||||||||||| || Sbjct: 1074 atcat-gacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 1016 Query: 435 tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494 ||| ||||| ||||||||||| || ||||| |||||| || || ||||| ||| ||||| Sbjct: 1015 tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 956 Query: 495 gttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtact 554 | | |||||||||||||||| ||||||||||||||| ||||||||| |||| || | | Sbjct: 955 gctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcatt 896 Query: 555 gtaatccactggatctgaaccatcccatacttcttcttgtttcaccaccctaagtgccat 614 ||||||||| |||||| |||||||||| ||| ||| | |||||| ||||| |||||| Sbjct: 895 gtaatccaccaaatctgagccatcccatatttc-tctgctatcacca-cctaattgccat 838 Query: 615 ggcttcgcattgattattggttccgtcatatcttgtaataagataagctgttgcacgcat 674 || || |||| |||||| ||||| ||||| ||||| || |||| || |||||||||| | Sbjct: 837 ggtttggcatcaattatt-gttccatcataccttgtgatcagat-agttgttgcacgcgt 780 Query: 675 cgattcttgggtatccagg 693 ||||| ||||||||||||| Sbjct: 779 cgatttttgggtatccagg 761
>dbj|AK106596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A06, full insert sequence Length = 2071 Score = 297 bits (150), Expect = 3e-77 Identities = 369/440 (83%), Gaps = 4/440 (0%) Strand = Plus / Minus Query: 78 aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137 ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct: 441 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 382 Query: 138 ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197 ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| ||| Sbjct: 381 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 322 Query: 198 ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257 ||||| ||||| || ||| ||||||| || |||||||| | | ||||||| || Sbjct: 321 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 262 Query: 258 gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314 |||||||||||||| || ||||| | |||||||||||||||||||| |||||||||| Sbjct: 261 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 202 Query: 315 gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374 | |||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||| Sbjct: 201 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 142 Query: 375 atcattgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccag 434 |||| |||| || || || |||||| ||||| ||||| || || ||||||||||| || Sbjct: 141 atca-tgacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgag 83 Query: 435 tggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggctt 494 ||| ||||| ||||||||||| || ||||| |||||| || || ||||| ||| ||||| Sbjct: 82 tgggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggctt 23 Query: 495 gttaagcatcctccatgccc 514 | | |||||||||||||||| Sbjct: 22 gctgagcatcctccatgccc 3
>gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, complete sequence Length = 168156 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 acctgtagttcaggtagagttc 175 |||||||||||||||||||||| Sbjct: 104786 acctgtagttcaggtagagttc 104807
>gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, complete sequence Length = 157594 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 acctgtagttcaggtagagttc 175 |||||||||||||||||||||| Sbjct: 3593 acctgtagttcaggtagagttc 3614
>dbj|AK032760.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720430F13 product:unclassifiable, full insert sequence Length = 3075 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 acctgtagttcaggtagagttc 175 |||||||||||||||||||||| Sbjct: 319 acctgtagttcaggtagagttc 340
>dbj|AB063124.1| Coturnix japonica DNA, microsatellite locus GUJ0056 Length = 183 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 cttctgcaggggcttgttaag 500 ||||||||||||||||||||| Sbjct: 132 cttctgcaggggcttgttaag 112
>gb|AC168049.2| Mus musculus BAC clone RP23-246L6 from chromosome 10, complete sequence Length = 229657 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tctgatgtccttctctgtca 354 |||||||||||||||||||| Sbjct: 113433 tctgatgtccttctctgtca 113452
>emb|CR450793.12| Zebrafish DNA sequence from clone DKEY-48M5 in linkage group 10, complete sequence Length = 130542 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ctcttatcctcttcttcatc 112 |||||||||||||||||||| Sbjct: 45702 ctcttatcctcttcttcatc 45683
>gb|AC125110.4| Mus musculus BAC clone RP24-235E14 from chromosome 18, complete sequence Length = 187634 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 tcagagttgctctctgggct 536 |||||||||||||||||||| Sbjct: 157392 tcagagttgctctctgggct 157411
>emb|AL161798.23| Human DNA sequence from clone RP11-108M11 on chromosome 10 Contains the 3' end of a novel gene (FLJ37306), a novel gene and a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene, complete sequence Length = 134438 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 90 ctcctcttatcctcttcttcatcaactg 117 ||||| |||||||||||||||| ||||| Sbjct: 79196 ctcctgttatcctcttcttcattaactg 79169
>emb|AL844589.3| Mouse DNA sequence from clone RP23-139C9 on chromosome 4, complete sequence Length = 162642 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 gttcagaactagctccatct 91 |||||||||||||||||||| Sbjct: 66593 gttcagaactagctccatct 66574
>gb|AC158232.2| Mus musculus BAC clone RP24-200M15 from chromosome 12, complete sequence Length = 187225 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ctcctcttatcctcttcttc 109 |||||||||||||||||||| Sbjct: 31475 ctcctcttatcctcttcttc 31456
>gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-337K7, complete sequence Length = 219769 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 ctctgatgtccttctctgtcaatg 357 ||||||| |||||||||||||||| Sbjct: 104093 ctctgatttccttctctgtcaatg 104070
>gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-301H20, complete sequence Length = 213462 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 ctctgatgtccttctctgtcaatg 357 ||||||| |||||||||||||||| Sbjct: 208654 ctctgatttccttctctgtcaatg 208631
>gb|AC003672.3| Arabidopsis thaliana chromosome 2 clone F16B22 map m336, complete sequence Length = 109375 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aaattcgattgctgatgaaa 30 |||||||||||||||||||| Sbjct: 78227 aaattcgattgctgatgaaa 78246
>gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence Length = 98630 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ttatcctcttcttcatcaac 115 |||||||||||||||||||| Sbjct: 91584 ttatcctcttcttcatcaac 91603
>gb|AF067845.1|AF067845 Homo sapiens clone P1-4248, complete sequence Length = 108932 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 actgccactcttctgcaggg 490 |||||||||||||||||||| Sbjct: 17766 actgccactcttctgcaggg 17747
>gb|AC162939.6| Mus musculus BAC clone RP23-97G12 from chromosome 10, complete sequence Length = 247228 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tctgatgtccttctctgtca 354 |||||||||||||||||||| Sbjct: 26105 tctgatgtccttctctgtca 26124
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 accaaaagcaatgttcggga 327 |||||||||||||||||||| Sbjct: 548144 accaaaagcaatgttcggga 548125
>gb|AC110288.10| Homo sapiens chromosome 8, clone CTD-2281E23, complete sequence Length = 102752 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 actgccactcttctgcaggg 490 |||||||||||||||||||| Sbjct: 94429 actgccactcttctgcaggg 94410 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,079,139 Number of Sequences: 3902068 Number of extensions: 6079139 Number of successful extensions: 130155 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130029 Number of HSP's gapped (non-prelim): 109 length of query: 694 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 671 effective length of database: 17,143,297,704 effective search space: 11503152759384 effective search space used: 11503152759384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)