ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13p01 |
|---|---|
| Clone Library Name | barley_pub |
>RL7_STRP8 (P0C098) 50S ribosomal protein L7/L12| Length = 121 Score = 35.8 bits (81), Expect = 0.13 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = -3 Query: 270 AYTTEVLSDGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQVPA 118 ++ E+ S G D+K+G + +R I GLG +EA+ +++G ++VK V A Sbjct: 54 SFDVELTSAG---DKKVGVIKAVREITGLGLKEAKGLVDGAPANVKEGVAA 101
>RL7_STRP6 (Q5XCB4) 50S ribosomal protein L7/L12| Length = 121 Score = 35.8 bits (81), Expect = 0.13 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = -3 Query: 270 AYTTEVLSDGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQVPA 118 ++ E+ S G D+K+G + +R I GLG +EA+ +++G ++VK V A Sbjct: 54 SFDVELTSAG---DKKVGVIKAVREITGLGLKEAKGLVDGAPANVKEGVAA 101
>RL7_STRP3 (P66064) 50S ribosomal protein L7/L12| Length = 121 Score = 35.8 bits (81), Expect = 0.13 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = -3 Query: 270 AYTTEVLSDGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQVPA 118 ++ E+ S G D+K+G + +R I GLG +EA+ +++G ++VK V A Sbjct: 54 SFDVELTSAG---DKKVGVIKAVREITGLGLKEAKGLVDGAPANVKEGVAA 101
>RL7_STRP1 (P66063) 50S ribosomal protein L7/L12| Length = 121 Score = 35.8 bits (81), Expect = 0.13 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = -3 Query: 270 AYTTEVLSDGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQVPA 118 ++ E+ S G D+K+G + +R I GLG +EA+ +++G ++VK V A Sbjct: 54 SFDVELTSAG---DKKVGVIKAVREITGLGLKEAKGLVDGAPANVKEGVAA 101
>RL7_COXBU (O87902) 50S ribosomal protein L7/L12| Length = 126 Score = 34.3 bits (77), Expect = 0.38 Identities = 16/36 (44%), Positives = 23/36 (63%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 D K+G + +R I GLG +EA+ ++E V S VK V Sbjct: 69 DNKIGVIKAIRTITGLGLKEAKDLVESVPSVVKESV 104
>RL7_LACLA (Q9CG42) 50S ribosomal protein L7/L12| Length = 121 Score = 33.1 bits (74), Expect = 0.84 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = -3 Query: 294 GDLKILYAAYTTEVLSDGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMSDVK 133 GD ++ E+ S G D+K+ + E+R I GLG +EA+ +++G + +K Sbjct: 46 GDAAAAKDSFDVELTSAG---DKKVAVIKEVRGITGLGLKEAKELVDGAPTMIK 96
>SRG15_CAEEL (Q18428) Serpentine receptor class gamma-15 (Protein srg-15)| Length = 320 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/55 (32%), Positives = 32/55 (58%) Frame = +2 Query: 410 ILFTSLITSVGMFPALVLDFNMDKADETFS*INFFACSLNMSAATSSKSLYASCT 574 ++FT + TSV ++ + L + A+++ N + SL AA +S++LYA CT Sbjct: 207 LVFTFICTSVTLYKLISLSDRIKSAEKSLCFSNIYI-SLTFLAAAASQALYAFCT 260
>COAD_CAMJR (Q5HV25) Phosphopantetheine adenylyltransferase (EC 2.7.7.3)| (Pantetheine-phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase) Length = 158 Score = 32.3 bits (72), Expect = 1.4 Identities = 26/94 (27%), Positives = 45/94 (47%) Frame = -3 Query: 573 VQLAYKLFDEVAADMFKEHAKKLIQENVSSALSILKSNTSAGNIPTEVINEVNSILAFNR 394 ++ A K+FDEV + K KK + L+ + T+ + V I+AF+ Sbjct: 20 IKRALKIFDEVIVAIAKSEHKKPCYD--------LEKRKELALLATQNLKNVK-IIAFDN 70 Query: 393 LLTVLSKFPQGDRFARGLGPISLAGDFDHDRMVG 292 LL L+K + + RGL +S DF+++ +G Sbjct: 71 LLVDLAKELKVNTIIRGLRAVS---DFEYELQIG 101
>COAD_CAMJE (Q9PPF2) Phosphopantetheine adenylyltransferase (EC 2.7.7.3)| (Pantetheine-phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase) Length = 158 Score = 32.3 bits (72), Expect = 1.4 Identities = 26/94 (27%), Positives = 45/94 (47%) Frame = -3 Query: 573 VQLAYKLFDEVAADMFKEHAKKLIQENVSSALSILKSNTSAGNIPTEVINEVNSILAFNR 394 ++ A K+FDEV + K KK + L+ + T+ + V I+AF+ Sbjct: 20 IKRALKIFDEVIVAIAKSEHKKPCYD--------LEKRKELALLATQNLKNVK-IIAFDN 70 Query: 393 LLTVLSKFPQGDRFARGLGPISLAGDFDHDRMVG 292 LL L+K + + RGL +S DF+++ +G Sbjct: 71 LLVDLAKELKVNTIIRGLRAVS---DFEYELQIG 101
>RL7_STRR6 (P0A472) 50S ribosomal protein L7/L12| Length = 121 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/49 (34%), Positives = 30/49 (61%) Frame = -3 Query: 270 AYTTEVLSDGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 ++ E+ S G D+K+G + +R I GLG +EA+ +++G + VK V Sbjct: 54 SFDVELTSAG---DKKVGVIKVVREITGLGLKEAKELVDGAPALVKEGV 99
>RL7_STRPN (P0A471) 50S ribosomal protein L7/L12| Length = 121 Score = 32.0 bits (71), Expect = 1.9 Identities = 17/49 (34%), Positives = 30/49 (61%) Frame = -3 Query: 270 AYTTEVLSDGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 ++ E+ S G D+K+G + +R I GLG +EA+ +++G + VK V Sbjct: 54 SFDVELTSAG---DKKVGVIKVVREITGLGLKEAKELVDGAPALVKEGV 99
>RL7_NEISI (P0A0W9) 50S ribosomal protein L7/L12| Length = 122 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 D+K+G + +R I GLG +EA+ I++G +K V Sbjct: 65 DQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGV 100
>RL7_NEIMB (P0A0X1) 50S ribosomal protein L7/L12| Length = 122 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 D+K+G + +R I GLG +EA+ I++G +K V Sbjct: 65 DQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGV 100
>RL7_NEIMA (P0A0X0) 50S ribosomal protein L7/L12| Length = 122 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 D+K+G + +R I GLG +EA+ I++G +K V Sbjct: 65 DQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGV 100
>RL7_NEILA (P0A0W8) 50S ribosomal protein L7/L12| Length = 122 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 D+K+G + +R I GLG +EA+ I++G +K V Sbjct: 65 DQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGV 100
>GATB_MYCLE (O33107) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 509 Score = 31.6 bits (70), Expect = 2.4 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 8/162 (4%) Frame = -3 Query: 579 RRVQLAYKLFDEVAADMFKEHAKKLIQENVSSALSILKSNTSAGNIPTEVINEVNSIL-- 406 +R+Q + + DEV D+ A +L+ V + S ++ GN + NE N L Sbjct: 336 KRIQQEWGISDEVMRDLVNAGAVELVAATVKNGASSEQARAWWGNFLVQKANEANITLDE 395 Query: 405 ---AFNRLLTVLSKFPQGD---RFARGLGPISLAGDFDHDRMVGDLKILYAAYTTEVLSD 244 ++ V++ +G R AR + LAG+ + ++++ D + A + + Sbjct: 396 LAITPAQVAVVVALVDEGKLSIRLARQVVEGVLAGEGEPEQVMVDRDL--ALVRDDSVMQ 453 Query: 243 GRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQVPA 118 +D+ + I G A AI+ VM + Q A Sbjct: 454 AAVDEALAADPDVAEKIRGGKVAAAGAIVGAVMKTTRGQADA 495
>RL7_RALSO (Q8XUZ7) 50S ribosomal protein L7/L12| Length = 124 Score = 31.2 bits (69), Expect = 3.2 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -3 Query: 225 KLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQVP 121 K+G + +R I GLG +EA+ +++G VK +P Sbjct: 69 KVGVIKAVREITGLGLKEAKDLVDGAPKTVKEAMP 103
>XYLR_STAXY (P27159) Xylose repressor| Length = 383 Score = 31.2 bits (69), Expect = 3.2 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = -3 Query: 573 VQLAYKLFDEVAADMFKEHAKKLIQENVSSALSILKSN 460 V+L Y FD A + K+ + +L +NVSS L ILKSN Sbjct: 91 VELMYNYFD---ATILKQDSYELNDKNVSSILQILKSN 125
>YFFQ_ECOLI (P76548) Hypothetical protein yffQ| Length = 130 Score = 30.8 bits (68), Expect = 4.2 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -3 Query: 600 IGTLIEVRRVQLAYKLFDEVAADMFKEHAKKLIQENVSSALSIL-KSNTSAGNIPTE 433 I TL + + + Y FD++AA K KK+++EN +++L K AG I E Sbjct: 66 IATLCKPVALVIIYDRFDDIAAIPLKVTLKKVLKENSDEKINLLNKMGDLAGRIVAE 122
>RL7_NEIPE (Q9F5M1) 50S ribosomal protein L7/L12| Length = 123 Score = 30.8 bits (68), Expect = 4.2 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 D+K+G + +R I GLG +EA+ I++G +K V Sbjct: 66 DQKVGVIKVVRAITGLGLKEAKDIVDGAPKTLKEGV 101
>RL7_RHOPA (Q6N4R8) 50S ribosomal protein L7/L12 (RRP-L7/L12)| Length = 124 Score = 30.8 bits (68), Expect = 4.2 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 D+K+ + E+R I GLG +EA+ ++EG +K V Sbjct: 67 DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPLKEGV 102
>RL7_BRUSU (P0A469) 50S ribosomal protein L7/L12| Length = 124 Score = 30.4 bits (67), Expect = 5.4 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = -3 Query: 255 VLSDGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMSDVK 133 VL+DG + K+ + E+R + GLG +EA+ ++EG VK Sbjct: 61 VLADGGAN--KINVIKEVRALTGLGLKEAKDLVEGAPKAVK 99
>RL7_BRUME (P0A468) 50S ribosomal protein L7/L12| Length = 124 Score = 30.4 bits (67), Expect = 5.4 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = -3 Query: 255 VLSDGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMSDVK 133 VL+DG + K+ + E+R + GLG +EA+ ++EG VK Sbjct: 61 VLADGGAN--KINVIKEVRALTGLGLKEAKDLVEGAPKAVK 99
>RL7_BRUAB (P0A470) 50S ribosomal protein L7/L12| Length = 124 Score = 30.4 bits (67), Expect = 5.4 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = -3 Query: 255 VLSDGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMSDVK 133 VL+DG + K+ + E+R + GLG +EA+ ++EG VK Sbjct: 61 VLADGGAN--KINVIKEVRALTGLGLKEAKDLVEGAPKAVK 99
>DEGP_RICCN (Q92JA1) Probable serine protease do-like precursor (EC 3.4.21.-)| Length = 508 Score = 30.4 bits (67), Expect = 5.4 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Frame = -3 Query: 672 DIAMRENAKSLYALELKSIGRGLDIGTLIEVRRVQLAYKLF---DEVAADMFKEHAKKLI 502 DI ++ K + I + + + L + + ++L K+ +EV D +E KK I Sbjct: 347 DIPVKNTKKLRVIIADAPIDQEVKVKILRDKKELELPIKITSDNEEVTKDSTEETNKKEI 406 Query: 501 QENVSSALSILKSNTSAGNIPTEV 430 + LSI K+N + GN+ E+ Sbjct: 407 TNKEENNLSITKNNITFGNLTEEL 430
>RL7_AGRT5 (Q8UE07) 50S ribosomal protein L7/L12| Length = 125 Score = 30.0 bits (66), Expect = 7.1 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 225 KLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 K+ + E+R I GLG +EA+ ++EG VK V Sbjct: 70 KINVIKEVRAITGLGLKEAKDLVEGAPKAVKEAV 103
>RL7_RHIME (Q92QH8) 50S ribosomal protein L7/L12| Length = 126 Score = 30.0 bits (66), Expect = 7.1 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 225 KLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 K+ + E+R I GLG +EA+ ++EG VK V Sbjct: 71 KINVIKEVRAITGLGLKEAKDLVEGAPKAVKEAV 104
>SERB_THASE (Q9S1G9) Selenate reductase beta subunit (EC 1.97.1.9) (Selenate| reductase iron-sulfur subunit) Length = 326 Score = 30.0 bits (66), Expect = 7.1 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -3 Query: 246 DGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMS 142 DGRL D+ P+ +L +FG G ++A A + G M+ Sbjct: 267 DGRLGDKPRIPIEDLEALFGPGVKQALATLGGEMA 301
>CLRB_IDEDE (P60069) Chlorate reductase beta subunit (Chlorate reductase| iron-sulfur subunit) Length = 328 Score = 30.0 bits (66), Expect = 7.1 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -3 Query: 246 DGRLDDEKLGPLNELRNIFGLGKREAEAIIEGVMS 142 DGRL D+ P+ +L +FG G ++A A + G M+ Sbjct: 269 DGRLGDKPRIPIEDLEALFGPGVKQALATLGGEMA 303
>RL7_PSEAE (Q9HWC8) 50S ribosomal protein L7/L12| Length = 122 Score = 29.6 bits (65), Expect = 9.3 Identities = 12/33 (36%), Positives = 22/33 (66%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVK 133 D+K+ + +R + GLG +EA+A+++G VK Sbjct: 65 DKKVNVIKVVRELTGLGLKEAKAVVDGAPGVVK 97
>RL7_CHLTR (O84318) 50S ribosomal protein L7/L12| Length = 129 Score = 29.6 bits (65), Expect = 9.3 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQ 127 D+K+G L +R + GL +EA+ + EG+ VK + Sbjct: 70 DKKIGVLKVVREVTGLALKEAKEMTEGLPKTVKEK 104
>RL7_CHLMU (P38001) 50S ribosomal protein L7/L12| Length = 129 Score = 29.6 bits (65), Expect = 9.3 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQ 127 D+K+G L +R + GL +EA+ + EG+ VK + Sbjct: 70 DKKIGVLKVVREVTGLALKEAKEMTEGLPKTVKEK 104
>RL7_CHLCV (Q822J0) 50S ribosomal protein L7/L12| Length = 130 Score = 29.6 bits (65), Expect = 9.3 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQ 127 D+K+G L +R + GL +EA+ + EG+ VK + Sbjct: 71 DKKIGVLKVVREVTGLALKEAKEMTEGLPKTVKEK 105
>RK12_CYACA (Q9TLZ9) Chloroplast 50S ribosomal protein L12| Length = 130 Score = 29.6 bits (65), Expect = 9.3 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQV 124 D+K+ L +R+I GLG +EA+ +E V +K + Sbjct: 73 DKKIAILKVVRSITGLGLKEAKEFVESVPKIIKQSI 108
>RL7_CHLPN (Q9Z9A1) 50S ribosomal protein L7/L12| Length = 128 Score = 29.6 bits (65), Expect = 9.3 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -3 Query: 231 DEKLGPLNELRNIFGLGKREAEAIIEGVMSDVKSQ 127 D+K+G L +R + GL +EA+ + EG+ VK + Sbjct: 69 DKKIGVLKVVREVTGLALKEAKEMTEGLPKTVKEK 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,823,594 Number of Sequences: 219361 Number of extensions: 1754966 Number of successful extensions: 4677 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 4518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4673 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7026286028 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
