Clone Name | rbasd14e07 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome | 40 | 1.3 | 2 | dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... | 38 | 5.0 | 3 | dbj|AP006553.3| Oryza sativa (japonica cultivar-group) genomic D... | 38 | 5.0 | 4 | dbj|AP006063.4| Oryza sativa (japonica cultivar-group) genomic D... | 38 | 5.0 |
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 aaccaacaggaacagccgcc 107 |||||||||||||||||||| Sbjct: 54876 aaccaacaggaacagccgcc 54895
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 56 aaagcggcgccgcggcacggcca 78 ||||||||| ||||||||||||| Sbjct: 18261814 aaagcggcggcgcggcacggcca 18261836
>dbj|AP006553.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0061G23 Length = 144220 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 56 aaagcggcgccgcggcacggcca 78 ||||||||| ||||||||||||| Sbjct: 142186 aaagcggcggcgcggcacggcca 142208
>dbj|AP006063.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0022O06 Length = 180769 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 56 aaagcggcgccgcggcacggcca 78 ||||||||| ||||||||||||| Sbjct: 11519 aaagcggcggcgcggcacggcca 11541 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 357,151 Number of Sequences: 3902068 Number of extensions: 357151 Number of successful extensions: 23042 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23021 Number of HSP's gapped (non-prelim): 21 length of query: 111 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 90 effective length of database: 17,151,101,840 effective search space: 1543599165600 effective search space used: 1543599165600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)