ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 1.3
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
3dbj|AP006553.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
4dbj|AP006063.4| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0

>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    aaccaacaggaacagccgcc 107
             ||||||||||||||||||||
Sbjct: 54876 aaccaacaggaacagccgcc 54895



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 56       aaagcggcgccgcggcacggcca 78
                ||||||||| |||||||||||||
Sbjct: 18261814 aaagcggcggcgcggcacggcca 18261836



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>dbj|AP006553.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0061G23
          Length = 144220

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 56     aaagcggcgccgcggcacggcca 78
              ||||||||| |||||||||||||
Sbjct: 142186 aaagcggcggcgcggcacggcca 142208



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>dbj|AP006063.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0022O06
          Length = 180769

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 56    aaagcggcgccgcggcacggcca 78
             ||||||||| |||||||||||||
Sbjct: 11519 aaagcggcggcgcggcacggcca 11541


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 357,151
Number of Sequences: 3902068
Number of extensions: 357151
Number of successful extensions: 23042
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23021
Number of HSP's gapped (non-prelim): 21
length of query: 111
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 90
effective length of database: 17,151,101,840
effective search space: 1543599165600
effective search space used: 1543599165600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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