ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14d24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NFU1_YEAST (P32860) NifU-like protein, mitochondrial precursor 46 8e-05
2NIFU_ANASL (P33179) Nitrogen fixation protein nifU (Fragment) 42 0.002
3HIRP5_MOUSE (Q9QZ23) HIRA-interacting protein 5 (mHIRIP5) 41 0.003
4NIFU_ANASP (P20628) Nitrogen fixation protein nifU 39 0.013
5NIFU_ANAAZ (Q43885) Nitrogen fixation protein nifU 39 0.013
6HIRP5_HUMAN (Q9UMS0) HIRA-interacting protein 5 39 0.017
7YH9J_SCHPO (Q9UUB8) NifU-like protein C1709.19c 37 0.064
8NIFU_PLEBO (Q00241) Nitrogen fixation protein nifU (Fragment) 35 0.14
9Y2378_PSEPK (Q88KB2) Hypothetical protein PP2378 33 0.92
10MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5) 32 1.6
11NIFU_AZOCH (P23121) Nitrogen fixation protein nifU 32 2.0
12NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU 32 2.0
13Y2735_PSESM (Q881Z4) Hypothetical protein PSPTO2735 30 4.6
14DCUA_HELPJ (Q9ZLC0) Anaerobic C4-dicarboxylate transporter dcuA 30 4.6
15CHEA_BACSU (P29072) Chemotaxis protein cheA (EC 2.7.13.3) 30 6.0
16DCUA_HELPY (O25425) Anaerobic C4-dicarboxylate transporter dcuA 30 7.8
17SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1 30 7.8

>NFU1_YEAST (P32860) NifU-like protein, mitochondrial precursor|
          Length = 256

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 21/45 (46%), Positives = 32/45 (71%)
 Frame = -3

Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           LRL+GAC+SC SS  T+  GIE +LK  + D +K++ Q+ D +Q+
Sbjct: 190 LRLQGACTSCSSSEVTLKYGIESMLKH-YVDEVKEVIQIMDPEQE 233



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>NIFU_ANASL (P33179) Nitrogen fixation protein nifU (Fragment)|
          Length = 112

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 601 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXSLRLEGACSSCPSSTTTMNMGIERVLKEKF 425
           + +VLD+ VRP LI                 + L+GAC SCPSST T+ + IE  L+++ 
Sbjct: 44  IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRI 103

Query: 424 GDAI 413
             ++
Sbjct: 104 NPSL 107



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>HIRP5_MOUSE (Q9QZ23) HIRA-interacting protein 5 (mHIRIP5)|
          Length = 199

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 18/48 (37%), Positives = 32/48 (66%)
 Frame = -3

Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 368
           L+L+G+C+SCPSS  T+  GI+ +L + +   ++ + QV D D+  E+
Sbjct: 148 LKLQGSCTSCPSSIITLKSGIQNML-QFYIPEVEGVEQVMDDDESDEK 194



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>NIFU_ANASP (P20628) Nitrogen fixation protein nifU|
          Length = 300

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -3

Query: 601 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXSLRLEGACSSCPSSTTTMNMGIERVLKEKF 425
           + +VLD+ VRP LI                 + L+GAC SC SST T+ + IE  L+++ 
Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291

Query: 424 GDAI 413
             ++
Sbjct: 292 NPSL 295



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>NIFU_ANAAZ (Q43885) Nitrogen fixation protein nifU|
          Length = 300

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -3

Query: 601 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXSLRLEGACSSCPSSTTTMNMGIERVLKEKF 425
           + +VLD+ VRP LI                 + L+GAC SC SST T+ + IE  L+++ 
Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291

Query: 424 GDAI 413
             ++
Sbjct: 292 NPSL 295



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>HIRP5_HUMAN (Q9UMS0) HIRA-interacting protein 5|
          Length = 196

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 17/48 (35%), Positives = 31/48 (64%)
 Frame = -3

Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 368
           L+L+G+C+SCPSS  T+  GI+ +L + +   ++ + QV D +   +E
Sbjct: 146 LKLQGSCTSCPSSIITLKNGIQNML-QFYIPEVEGVEQVMDDESDEKE 192



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>YH9J_SCHPO (Q9UUB8) NifU-like protein C1709.19c|
          Length = 260

 Score = 36.6 bits (83), Expect = 0.064
 Identities = 16/45 (35%), Positives = 30/45 (66%)
 Frame = -3

Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           L+L GAC +C SS  T+  GI+++LK    + ++++ QV D +++
Sbjct: 194 LKLRGACRTCSSSAVTLKNGIQQMLKHYIPE-VENVVQVLDPEEE 237



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>NIFU_PLEBO (Q00241) Nitrogen fixation protein nifU (Fragment)|
          Length = 205

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 601 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXSLRLEGACSSCPSSTTTMNMGIERVLK 434
           + +VLD+ VRP LI                 + L+GAC SC SST T+   +E  L+
Sbjct: 137 IQKVLDEEVRPVLIADGGDVELYDVDGDFVKVTLKGACGSCASSTATLKDAVEAKLR 193



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>Y2378_PSEPK (Q88KB2) Hypothetical protein PP2378|
          Length = 194

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           L+  G C  C  +  T+  GIER L E+  + +K +R V D  Q+
Sbjct: 146 LQFGGGCQGCGQADVTLKEGIERTLLERIPE-LKGVRDVTDHSQK 189



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>MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 20/144 (13%)
 Frame = -3

Query: 496 ACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAI 317
           AC +C   +TTM+      ++E+    +K + Q FD  ++   T P      ++ILR AI
Sbjct: 71  ACKACKRKSTTMDRRKAATMRER--RRLKKVNQAFDTLKRCTTTNPNQRLPKVEILRNAI 128

Query: 316 ANYGGSVEVL--------AVDGEDCLVK-------YDGPESIGSGVKAAIKEKF-----P 197
                  E+L        ++ G+ C           DG     S + +     F     P
Sbjct: 129 RYIESLQELLREQVENYYSLPGQSCSEPTSPTSSCSDGMPECNSPIWSRKSSSFDSVYCP 188

Query: 196 DITNVVFTQ*STGRLA*CHSSAVN 125
           D+ NV  T  S+     C SS V+
Sbjct: 189 DVPNVYATDKSSLSSLDCLSSIVD 212



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>NIFU_AZOCH (P23121) Nitrogen fixation protein nifU|
          Length = 309

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
 Frame = -3

Query: 499 GACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPE--------------ETT 362
           G CS+C       + GIERVL E+     +       G ++ +                T
Sbjct: 170 GGCSAC-------HEGIERVLSEELAPVARSSSCADQGQEEVKVLAPSRLRSWPRRLRAT 222

Query: 361 PEAVNRH--------LDILRPAIANYGGSVEVLAVDGEDCLVKYDG 248
           P+  N          L  +RP +    G VE++ VDG++  VK  G
Sbjct: 223 PKLSNLQRIRRIETVLAAIRPTLQRDKGDVELIDVDGKNIYVKLTG 268



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>NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU|
          Length = 310

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIK 410
           +RL GACS C  S  TM MG++  L E  G+ ++
Sbjct: 267 VRLTGACSGCSQSAGTM-MGVQAKLVEALGEFVR 299



 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = -3

Query: 328 RPAIANYGGSVEVLAVDGEDCLVKYDG-----PESIGS--GVKAAIKEKFPDITNV 182
           RP I   GG VE++ +DG+D  V+  G      +S G+  GV+A + E   +   V
Sbjct: 245 RPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTMMGVQAKLVEALGEFVRV 300



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>Y2735_PSESM (Q881Z4) Hypothetical protein PSPTO2735|
          Length = 197

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           L+  G C  C  +  T+  GIER L E+  + +  +R V D  Q+
Sbjct: 149 LQFGGGCQGCGQADVTLKEGIERTLLERIPE-LSGVRDVTDHTQK 192



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>DCUA_HELPJ (Q9ZLC0) Anaerobic C4-dicarboxylate transporter dcuA|
          Length = 443

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 266
           W+ TTF+     + +  FT L +DS P+YL R
Sbjct: 174 WIPTTFLACMLTAFVMGFTDLKLDSDPNYLER 205



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>CHEA_BACSU (P29072) Chemotaxis protein cheA (EC 2.7.13.3)|
          Length = 671

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = -3

Query: 451 IERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNR------HLDILRPAIANYGGSVEV 290
           +ERV+ EK  + ++D  Q+++    P  +T + ++        LD+++  + + GGSV V
Sbjct: 463 LERVITEKEAETLED-NQIYELIFAPGFSTADQISDISGRGVGLDVVKNKLESLGGSVSV 521

Query: 289 LAVDGEDCLVKYDGP 245
            + +G+  L     P
Sbjct: 522 KSAEGQGSLFSIQLP 536



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>DCUA_HELPY (O25425) Anaerobic C4-dicarboxylate transporter dcuA|
          Length = 443

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 266
           W+ TTF+     + +  FT L +DS P YL R
Sbjct: 174 WIPTTFLACMLTAFIMGFTDLKLDSDPHYLER 205



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>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1|
          Length = 881

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 15/57 (26%)
 Frame = -2

Query: 488 QLSQLDDDDEHGHRASAQGE---------------VR*RHQGHPPGVRRGPATRRDD 363
           ++ Q DDD+E      AQG                 R    G PPGVR G +T  +D
Sbjct: 616 RIQQFDDDEEEEDEEEAQGSGESDGEDGAWQGSQLARGARLGQPPGVRSGGSTDSED 672


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,675,382
Number of Sequences: 219361
Number of extensions: 1818321
Number of successful extensions: 6139
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6134
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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