ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14d24 |
|---|---|
| Clone Library Name | barley_pub |
>NFU1_YEAST (P32860) NifU-like protein, mitochondrial precursor| Length = 256 Score = 46.2 bits (108), Expect = 8e-05 Identities = 21/45 (46%), Positives = 32/45 (71%) Frame = -3 Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377 LRL+GAC+SC SS T+ GIE +LK + D +K++ Q+ D +Q+ Sbjct: 190 LRLQGACTSCSSSEVTLKYGIESMLKH-YVDEVKEVIQIMDPEQE 233
>NIFU_ANASL (P33179) Nitrogen fixation protein nifU (Fragment)| Length = 112 Score = 42.0 bits (97), Expect = 0.002 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = -3 Query: 601 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXSLRLEGACSSCPSSTTTMNMGIERVLKEKF 425 + +VLD+ VRP LI + L+GAC SCPSST T+ + IE L+++ Sbjct: 44 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRI 103 Query: 424 GDAI 413 ++ Sbjct: 104 NPSL 107
>HIRP5_MOUSE (Q9QZ23) HIRA-interacting protein 5 (mHIRIP5)| Length = 199 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = -3 Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 368 L+L+G+C+SCPSS T+ GI+ +L + + ++ + QV D D+ E+ Sbjct: 148 LKLQGSCTSCPSSIITLKSGIQNML-QFYIPEVEGVEQVMDDDESDEK 194
>NIFU_ANASP (P20628) Nitrogen fixation protein nifU| Length = 300 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = -3 Query: 601 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXSLRLEGACSSCPSSTTTMNMGIERVLKEKF 425 + +VLD+ VRP LI + L+GAC SC SST T+ + IE L+++ Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291 Query: 424 GDAI 413 ++ Sbjct: 292 NPSL 295
>NIFU_ANAAZ (Q43885) Nitrogen fixation protein nifU| Length = 300 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = -3 Query: 601 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXSLRLEGACSSCPSSTTTMNMGIERVLKEKF 425 + +VLD+ VRP LI + L+GAC SC SST T+ + IE L+++ Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291 Query: 424 GDAI 413 ++ Sbjct: 292 NPSL 295
>HIRP5_HUMAN (Q9UMS0) HIRA-interacting protein 5| Length = 196 Score = 38.5 bits (88), Expect = 0.017 Identities = 17/48 (35%), Positives = 31/48 (64%) Frame = -3 Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 368 L+L+G+C+SCPSS T+ GI+ +L + + ++ + QV D + +E Sbjct: 146 LKLQGSCTSCPSSIITLKNGIQNML-QFYIPEVEGVEQVMDDESDEKE 192
>YH9J_SCHPO (Q9UUB8) NifU-like protein C1709.19c| Length = 260 Score = 36.6 bits (83), Expect = 0.064 Identities = 16/45 (35%), Positives = 30/45 (66%) Frame = -3 Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377 L+L GAC +C SS T+ GI+++LK + ++++ QV D +++ Sbjct: 194 LKLRGACRTCSSSAVTLKNGIQQMLKHYIPE-VENVVQVLDPEEE 237
>NIFU_PLEBO (Q00241) Nitrogen fixation protein nifU (Fragment)| Length = 205 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -3 Query: 601 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXSLRLEGACSSCPSSTTTMNMGIERVLK 434 + +VLD+ VRP LI + L+GAC SC SST T+ +E L+ Sbjct: 137 IQKVLDEEVRPVLIADGGDVELYDVDGDFVKVTLKGACGSCASSTATLKDAVEAKLR 193
>Y2378_PSEPK (Q88KB2) Hypothetical protein PP2378| Length = 194 Score = 32.7 bits (73), Expect = 0.92 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = -3 Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377 L+ G C C + T+ GIER L E+ + +K +R V D Q+ Sbjct: 146 LQFGGGCQGCGQADVTLKEGIERTLLERIPE-LKGVRDVTDHSQK 189
>MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5)| Length = 255 Score = 32.0 bits (71), Expect = 1.6 Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 20/144 (13%) Frame = -3 Query: 496 ACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAI 317 AC +C +TTM+ ++E+ +K + Q FD ++ T P ++ILR AI Sbjct: 71 ACKACKRKSTTMDRRKAATMRER--RRLKKVNQAFDTLKRCTTTNPNQRLPKVEILRNAI 128 Query: 316 ANYGGSVEVL--------AVDGEDCLVK-------YDGPESIGSGVKAAIKEKF-----P 197 E+L ++ G+ C DG S + + F P Sbjct: 129 RYIESLQELLREQVENYYSLPGQSCSEPTSPTSSCSDGMPECNSPIWSRKSSSFDSVYCP 188 Query: 196 DITNVVFTQ*STGRLA*CHSSAVN 125 D+ NV T S+ C SS V+ Sbjct: 189 DVPNVYATDKSSLSSLDCLSSIVD 212
>NIFU_AZOCH (P23121) Nitrogen fixation protein nifU| Length = 309 Score = 31.6 bits (70), Expect = 2.0 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 22/106 (20%) Frame = -3 Query: 499 GACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPE--------------ETT 362 G CS+C + GIERVL E+ + G ++ + T Sbjct: 170 GGCSAC-------HEGIERVLSEELAPVARSSSCADQGQEEVKVLAPSRLRSWPRRLRAT 222 Query: 361 PEAVNRH--------LDILRPAIANYGGSVEVLAVDGEDCLVKYDG 248 P+ N L +RP + G VE++ VDG++ VK G Sbjct: 223 PKLSNLQRIRRIETVLAAIRPTLQRDKGDVELIDVDGKNIYVKLTG 268
>NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU| Length = 310 Score = 31.6 bits (70), Expect = 2.0 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -3 Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIK 410 +RL GACS C S TM MG++ L E G+ ++ Sbjct: 267 VRLTGACSGCSQSAGTM-MGVQAKLVEALGEFVR 299 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%) Frame = -3 Query: 328 RPAIANYGGSVEVLAVDGEDCLVKYDG-----PESIGS--GVKAAIKEKFPDITNV 182 RP I GG VE++ +DG+D V+ G +S G+ GV+A + E + V Sbjct: 245 RPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTMMGVQAKLVEALGEFVRV 300
>Y2735_PSESM (Q881Z4) Hypothetical protein PSPTO2735| Length = 197 Score = 30.4 bits (67), Expect = 4.6 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -3 Query: 511 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377 L+ G C C + T+ GIER L E+ + + +R V D Q+ Sbjct: 149 LQFGGGCQGCGQADVTLKEGIERTLLERIPE-LSGVRDVTDHTQK 192
>DCUA_HELPJ (Q9ZLC0) Anaerobic C4-dicarboxylate transporter dcuA| Length = 443 Score = 30.4 bits (67), Expect = 4.6 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 266 W+ TTF+ + + FT L +DS P+YL R Sbjct: 174 WIPTTFLACMLTAFVMGFTDLKLDSDPNYLER 205
>CHEA_BACSU (P29072) Chemotaxis protein cheA (EC 2.7.13.3)| Length = 671 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Frame = -3 Query: 451 IERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNR------HLDILRPAIANYGGSVEV 290 +ERV+ EK + ++D Q+++ P +T + ++ LD+++ + + GGSV V Sbjct: 463 LERVITEKEAETLED-NQIYELIFAPGFSTADQISDISGRGVGLDVVKNKLESLGGSVSV 521 Query: 289 LAVDGEDCLVKYDGP 245 + +G+ L P Sbjct: 522 KSAEGQGSLFSIQLP 536
>DCUA_HELPY (O25425) Anaerobic C4-dicarboxylate transporter dcuA| Length = 443 Score = 29.6 bits (65), Expect = 7.8 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +3 Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 266 W+ TTF+ + + FT L +DS P YL R Sbjct: 174 WIPTTFLACMLTAFIMGFTDLKLDSDPHYLER 205
>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1| Length = 881 Score = 29.6 bits (65), Expect = 7.8 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 15/57 (26%) Frame = -2 Query: 488 QLSQLDDDDEHGHRASAQGE---------------VR*RHQGHPPGVRRGPATRRDD 363 ++ Q DDD+E AQG R G PPGVR G +T +D Sbjct: 616 RIQQFDDDEEEEDEEEAQGSGESDGEDGAWQGSQLARGARLGQPPGVRSGGSTDSED 672 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,675,382 Number of Sequences: 219361 Number of extensions: 1818321 Number of successful extensions: 6139 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5886 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6134 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
