Clone Name | rbasd14d24 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK069184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A17, full insert sequence Length = 1154 Score = 474 bits (239), Expect = e-130 Identities = 398/451 (88%) Strand = Plus / Minus Query: 176 gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 235 |||||||||||| |||||||| |||||||||||||||||||| ||||| | || ||||| Sbjct: 729 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 670 Query: 236 gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 295 ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||| Sbjct: 669 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 610 Query: 296 cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 355 ||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| Sbjct: 609 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 550 Query: 356 ctcaggcgtcgtctcttcgggttgctggtccccgtcgaacacctggcggatgtccttgat 415 || ||||| | ||| | || ||||| || ||||||||||||||||||| || || | Sbjct: 549 ctggggcgttggctccgccggctgctgatcgtcgtcgaacacctggcggatatcttttac 490 Query: 416 ggcgtcaccgaacttctccttgagcactcgctcgatgcccatgttcatcgtcgtcgtcga 475 |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 489 ggcgtcgccgaacttctccttgagcacgcgctcgatgcccatcttcatcgtcgtcgtcga 430 Query: 476 gctgggacaactgctgcacgccccttcaagcctaagggagacgacgccgtcctctacgga 535 |||||| || |||| |||||| ||||| ||| | ||||||| |||||||||||| ||||| Sbjct: 429 gctggggcagctgccgcacgctccttcgagcttgagggagatgacgccgtcctcgacgga 370 Query: 536 cacgacggcgacgtcgccgccgtcggagatgaggtaggggcgcacgtcgtcgaggacgcg 595 | |||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 369 cgcgacggtgacgtcgccgccgtcggcgatgaggtaggggcgcacgtcgtccaggacgcg 310 Query: 596 gtcgacgttatccggcgtcagttcgtaggtc 626 ||||||||| |||| |||||| ||||||||| Sbjct: 309 gtcgacgttctccgccgtcagctcgtaggtc 279
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 210 bits (106), Expect = 4e-51 Identities = 163/182 (89%) Strand = Plus / Minus Query: 176 gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 235 |||||||||||| |||||||| |||||||||||||||||||| ||||| | || ||||| Sbjct: 11245910 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 11245851 Query: 236 gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 295 ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||| Sbjct: 11245850 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 11245791 Query: 296 cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 355 ||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| Sbjct: 11245790 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 11245731 Query: 356 ct 357 || Sbjct: 11245730 ct 11245729 Score = 161 bits (81), Expect = 3e-36 Identities = 108/117 (92%) Strand = Plus / Minus Query: 510 agggagacgacgccgtcctctacggacacgacggcgacgtcgccgccgtcggagatgagg 569 ||||||| |||||||||||| |||||| |||||| ||||||||||||||||| ||||||| Sbjct: 11245372 agggagatgacgccgtcctcgacggacgcgacggtgacgtcgccgccgtcggcgatgagg 11245313 Query: 570 taggggcgcacgtcgtcgaggacgcggtcgacgttatccggcgtcagttcgtaggtc 626 ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 11245312 taggggcgcacgtcgtccaggacgcggtcgacgttctccgccgtcagctcgtaggtc 11245256 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Minus Query: 388 cgtcgaacacctggcggatgtccttgatggcgtcaccgaacttctccttgagcactcgct 447 ||||||||||||||||||| || || | |||||| |||||||||||||||||||| |||| Sbjct: 11245624 cgtcgaacacctggcggatatcttttacggcgtcgccgaacttctccttgagcacgcgct 11245565 Query: 448 cgatgcccatgttcatcgtcgtcgtcgagctgggacaactgctgcacgc 496 |||||||||| ||||||||||||||||||||||| || |||| |||||| Sbjct: 11245564 cgatgcccatcttcatcgtcgtcgtcgagctggggcagctgccgcacgc 11245516 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 26000100 cggcgacgtcgccgccgtcg 26000081 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 cgacggcgacgtcgccgccg 557 |||||||||||||||||||| Sbjct: 15507557 cgacggcgacgtcgccgccg 15507576
>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0085H08, from chromosome 3, complete sequence Length = 130656 Score = 210 bits (106), Expect = 4e-51 Identities = 163/182 (89%) Strand = Plus / Minus Query: 176 gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 235 |||||||||||| |||||||| |||||||||||||||||||| ||||| | || ||||| Sbjct: 24863 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 24804 Query: 236 gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 295 ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||| Sbjct: 24803 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 24744 Query: 296 cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 355 ||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| Sbjct: 24743 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 24684 Query: 356 ct 357 || Sbjct: 24683 ct 24682 Score = 161 bits (81), Expect = 3e-36 Identities = 108/117 (92%) Strand = Plus / Minus Query: 510 agggagacgacgccgtcctctacggacacgacggcgacgtcgccgccgtcggagatgagg 569 ||||||| |||||||||||| |||||| |||||| ||||||||||||||||| ||||||| Sbjct: 24325 agggagatgacgccgtcctcgacggacgcgacggtgacgtcgccgccgtcggcgatgagg 24266 Query: 570 taggggcgcacgtcgtcgaggacgcggtcgacgttatccggcgtcagttcgtaggtc 626 ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 24265 taggggcgcacgtcgtccaggacgcggtcgacgttctccgccgtcagctcgtaggtc 24209 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Minus Query: 388 cgtcgaacacctggcggatgtccttgatggcgtcaccgaacttctccttgagcactcgct 447 ||||||||||||||||||| || || | |||||| |||||||||||||||||||| |||| Sbjct: 24577 cgtcgaacacctggcggatatcttttacggcgtcgccgaacttctccttgagcacgcgct 24518 Query: 448 cgatgcccatgttcatcgtcgtcgtcgagctgggacaactgctgcacgc 496 |||||||||| ||||||||||||||||||||||| || |||| |||||| Sbjct: 24517 cgatgcccatcttcatcgtcgtcgtcgagctggggcagctgccgcacgc 24469
>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0085H08, from chromosome 3, complete sequence Length = 126708 Score = 210 bits (106), Expect = 4e-51 Identities = 163/182 (89%) Strand = Plus / Plus Query: 176 gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 235 |||||||||||| |||||||| |||||||||||||||||||| ||||| | || ||||| Sbjct: 35138 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 35197 Query: 236 gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 295 ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||| Sbjct: 35198 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 35257 Query: 296 cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 355 ||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| Sbjct: 35258 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 35317 Query: 356 ct 357 || Sbjct: 35318 ct 35319 Score = 161 bits (81), Expect = 3e-36 Identities = 108/117 (92%) Strand = Plus / Plus Query: 510 agggagacgacgccgtcctctacggacacgacggcgacgtcgccgccgtcggagatgagg 569 ||||||| |||||||||||| |||||| |||||| ||||||||||||||||| ||||||| Sbjct: 35676 agggagatgacgccgtcctcgacggacgcgacggtgacgtcgccgccgtcggcgatgagg 35735 Query: 570 taggggcgcacgtcgtcgaggacgcggtcgacgttatccggcgtcagttcgtaggtc 626 ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 35736 taggggcgcacgtcgtccaggacgcggtcgacgttctccgccgtcagctcgtaggtc 35792 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 388 cgtcgaacacctggcggatgtccttgatggcgtcaccgaacttctccttgagcactcgct 447 ||||||||||||||||||| || || | |||||| |||||||||||||||||||| |||| Sbjct: 35424 cgtcgaacacctggcggatatcttttacggcgtcgccgaacttctccttgagcacgcgct 35483 Query: 448 cgatgcccatgttcatcgtcgtcgtcgagctgggacaactgctgcacgc 496 |||||||||| ||||||||||||||||||||||| || |||| |||||| Sbjct: 35484 cgatgcccatcttcatcgtcgtcgtcgagctggggcagctgccgcacgc 35532
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 210 bits (106), Expect = 4e-51 Identities = 163/182 (89%) Strand = Plus / Minus Query: 176 gaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccactccc 235 |||||||||||| |||||||| |||||||||||||||||||| ||||| | || ||||| Sbjct: 11242673 gaacaccacattggtgatgtccgggaacttctccttgatggccgccttgatcccgctccc 11242614 Query: 236 gatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagcacctc 295 ||||||||| ||||| |||||| | |||||||||||||||||||| ||||| | |||||| Sbjct: 11242613 gatggactcggggccttcgtacctcaccaggcagtcctcgccgtcgacggcgaccacctc 11242554 Query: 296 cacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttcaccgc 355 ||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| Sbjct: 11242553 cacgctcccgccgtagttggcgatcgccggccgcagtatgtccaggtggccgttcaccgc 11242494 Query: 356 ct 357 || Sbjct: 11242493 ct 11242492 Score = 161 bits (81), Expect = 3e-36 Identities = 108/117 (92%) Strand = Plus / Minus Query: 510 agggagacgacgccgtcctctacggacacgacggcgacgtcgccgccgtcggagatgagg 569 ||||||| |||||||||||| |||||| |||||| ||||||||||||||||| ||||||| Sbjct: 11242135 agggagatgacgccgtcctcgacggacgcgacggtgacgtcgccgccgtcggcgatgagg 11242076 Query: 570 taggggcgcacgtcgtcgaggacgcggtcgacgttatccggcgtcagttcgtaggtc 626 ||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 11242075 taggggcgcacgtcgtccaggacgcggtcgacgttctccgccgtcagctcgtaggtc 11242019 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Minus Query: 388 cgtcgaacacctggcggatgtccttgatggcgtcaccgaacttctccttgagcactcgct 447 ||||||||||||||||||| || || | |||||| |||||||||||||||||||| |||| Sbjct: 11242387 cgtcgaacacctggcggatatcttttacggcgtcgccgaacttctccttgagcacgcgct 11242328 Query: 448 cgatgcccatgttcatcgtcgtcgtcgagctgggacaactgctgcacgc 496 |||||||||| ||||||||||||||||||||||| || |||| |||||| Sbjct: 11242327 cgatgcccatcttcatcgtcgtcgtcgagctggggcagctgccgcacgc 11242279 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 26091409 cggcgacgtcgccgccgtcg 26091390 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 cgacggcgacgtcgccgccg 557 |||||||||||||||||||| Sbjct: 15502091 cgacggcgacgtcgccgccg 15502110
>gb|AY110393.1| Zea mays CL5132_1 mRNA sequence Length = 844 Score = 194 bits (98), Expect = 2e-46 Identities = 207/245 (84%) Strand = Plus / Plus Query: 389 gtcgaacacctggcggatgtccttgatggcgtcaccgaacttctccttgagcactcgctc 448 |||||||||||| ||||| ||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 502 gtcgaacacctgacggatttccttgaaagcgtcgccgaacttctccttgagcacacgctc 561 Query: 449 gatgcccatgttcatcgtcgtcgtcgagctgggacaactgctgcacgccccttcaagcct 508 ||||||||| ||||||||||||||| ||||||| || |||| ||| || ||||| ||| | Sbjct: 562 gatgcccatattcatcgtcgtcgtcaagctggggcagctgccgcaagctccttcgagctt 621 Query: 509 aagggagacgacgccgtcctctacggacacgacggcgacgtcgccgccgtcggagatgag 568 ||||||| ||| |||||||| |||| ||||||| ||||| | ||| |||||||| Sbjct: 622 gagggagatgacaccgtcctcgacggcaacgacggtgacgttgnnnnngtcagagatgag 681 Query: 569 gtaggggcgcacgtcgtcgaggacgcggtcgacgttatccggcgtcagttcgtaggtcgc 628 ||| || || |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct: 682 gtacggccggacgtcgtccaggacgcggtcgacgttttccggggtcagctcgtacgtcgc 741 Query: 629 tgccg 633 |||| Sbjct: 742 cgccg 746 Score = 180 bits (91), Expect = 4e-42 Identities = 163/187 (87%) Strand = Plus / Plus Query: 172 gggtgaacaccacattcgtgatgtcggggaacttctccttgatggctgccttcactccac 231 |||| ||||||||| | |||||||| ||||| |||||||||||||| ||||| | || | Sbjct: 285 gggtaaacaccacactggtgatgtccgggaatttctccttgatggccgccttgataccgc 344 Query: 232 tcccgatggactctgggccgtcgtacttaaccaggcagtcctcgccgtcaacggcaagca 291 | |||||||| || || ||||||||| | ||||||||||||||||| || ||||| | || Sbjct: 345 tgccgatggattccggcccgtcgtacctcaccaggcagtcctcgccatcgacggccaaca 404 Query: 292 cctccacactcccgccgtagttcgcgatcgccggacgcagtatgtccaggtgccggttca 351 | ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 405 catccacgctcccgccgtagttcgcgatcgctggccgcagtatgtccaggtgccggttca 464 Query: 352 ccgcctc 358 ||||||| Sbjct: 465 ccgcctc 471
>gb|U95179.1|PAU95179 Prunus armeniaca putative NifU protein mRNA, partial cds Length = 636 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 516 acgacgccgtcctctacggacacgacggcgacgtcgccgccgtcggagatgaggtagggg 575 |||||||||||||| |||||||| ||| ||||||| ||||| || | |||||| |||||| Sbjct: 104 acgacgccgtcctcaacggacacaacgtcgacgtcaccgccatcagcgatgagatagggg 45 Query: 576 cg 577 || Sbjct: 44 cg 43
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Plus Query: 544 cgacgtcgccgccgtcggagatgaggtaggggcgcacgtcgtcgaggacgcggtcgacgt 603 |||||| |||||||||||| || | |||||||||| ||||||||||| | ||||||| Sbjct: 3071187 cgacgttgccgccgtcggacatcaaataggggcgcaattcgtcgaggaccagctcgacgt 3071246 Query: 604 tatcc 608 ||||| Sbjct: 3071247 tatcc 3071251
>emb|X04616.2|ANPSBA1 Synechococcus sp. PCC 7942 pmg1 (partial), secG, bcsA, psbK, tgt, sys, end3, pur6, dpdX, dxs, leu1, sek0003, sek0005, sek0006, sek0007, sek0008, sek0009, sek0010, sek0011, sek0012, sel0013, sek0016, sel0017, sek0018, sel0019, sek0020, sek0022, sek0024, sek0025, sek0026, sek0027, sel0028, sek0030, sek0031, sel0032, sel0033, sel0034, sel0035, sel0036, sel0037, sel0039, sek0041, sek0043, sek0044, sek0045, psba-I gene, sek0047 and sel0048 (partial) genes Length = 42558 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Minus Query: 544 cgacgtcgccgccgtcggagatgaggtaggggcgcacgtcgtcgaggacg 593 |||||| |||||| |||| |||||||||||||||| ||||| |||||| Sbjct: 14964 cgacgttgccgccatcggcaatgaggtaggggcgcagctcgtccaggacg 14915
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 542 ggcgacgtcgccgccgtcggag 563 |||||||||||||||||||||| Sbjct: 317750 ggcgacgtcgccgccgtcggag 317729
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 466 tcgtcgtcgagctgggacaact 487 |||||||||||||||||||||| Sbjct: 3863391 tcgtcgtcgagctgggacaact 3863412
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Minus Query: 544 cgacgtcgccgccgtcggagatgaggtaggggcgcacgtcgtcgaggacg 593 |||||| |||||| |||| |||||||||||||||| ||||| |||||| Sbjct: 1180678 cgacgttgccgccatcggcaatgaggtaggggcgcagctcgtccaggacg 1180629
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 466 tcgtcgtcgagctgggacaact 487 |||||||||||||||||||||| Sbjct: 3864065 tcgtcgtcgagctgggacaact 3864086
>gb|AY840979.1| Bifidobacterium breve prophage-like element, complete sequence Length = 28155 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 tcggggaacttctccttgatgg 216 |||||||||||||||||||||| Sbjct: 19232 tcggggaacttctccttgatgg 19253
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Plus Query: 544 cgacgtcgccgccgtcggagatgaggtaggggcgcacgtcgtcgaggacg 593 |||||| |||||| |||| |||||||||||||||| ||||| |||||| Sbjct: 440202 cgacgttgccgccatcggcaatgaggtaggggcgcagctcgtccaggacg 440251
>gb|AC113550.11| Mus musculus chromosome 6, clone RP23-275L12, complete sequence Length = 203865 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 caaaaattactccatttcatt 26 ||||||||||||||||||||| Sbjct: 51486 caaaaattactccatttcatt 51466
>emb|AL357493.8| Human DNA sequence from clone RP11-439A17 on chromosome 1 Contains four novel genes, a novel gene (MGC57827), a ribosomal protein L22 (RPL22) pseudogene, a histone 2 H3c (HIST2H3C) pseudogene, the HIST2H2BB gene for histone 2 H2bb, the FCGR1B gene for Fc fragment of IgG high affinity Ib receptor for (CD64) and three CpG islands, complete sequence Length = 189539 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 tttttctacccaaaggaaaca 66 ||||||||||||||||||||| Sbjct: 114419 tttttctacccaaaggaaaca 114439
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 538 cgacggcgacgtcgccgccgtcgga 562 |||||||||| |||||||||||||| Sbjct: 1458587 cgacggcgacctcgccgccgtcgga 1458611
>ref|XM_775936.1| PREDICTED: Strongylocentrotus purpuratus similar to CG11081-PA, isoform A (LOC575541), mRNA Length = 4581 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 545 gacgtcgccgccgtcggagat 565 ||||||||||||||||||||| Sbjct: 1525 gacgtcgccgccgtcggagat 1545
>gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0049K09, complete sequence Length = 154181 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 538 cgacggcgacgtcgccgccgtcgga 562 |||||||||| |||||||||||||| Sbjct: 71341 cgacggcgacctcgccgccgtcgga 71365
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 189 gtgatgtcggggaacttctccttgatggc 217 |||||||| ||| |||||||||||||||| Sbjct: 739405 gtgatgtctgggtacttctccttgatggc 739377
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 586 cgaggacgcggtcgacgttat 606 ||||||||||||||||||||| Sbjct: 869699 cgaggacgcggtcgacgttat 869679
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 538 cgacggcgacgtcgccgccgtcgga 562 |||||||||| |||||||||||||| Sbjct: 1458587 cgacggcgacctcgccgccgtcgga 1458611
>gb|AY566569.1| Felis catus myocilin mRNA, complete cds Length = 2125 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 tcgaacacctggcggatgtcc 410 ||||||||||||||||||||| Sbjct: 963 tcgaacacctggcggatgtcc 943
>dbj|AK107098.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H10, full insert sequence Length = 1686 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 538 cgacggcgacgtcgccgccgtcgga 562 |||||||||| |||||||||||||| Sbjct: 49 cgacggcgacctcgccgccgtcgga 73
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 541 cggcgacgtcgccgccgtcgg 561 ||||||||||||||||||||| Sbjct: 1373612 cggcgacgtcgccgccgtcgg 1373632 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 accaggcagtcctcgccgtc 280 |||||||||||||||||||| Sbjct: 3198140 accaggcagtcctcgccgtc 3198159 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 536 cacgacggcgacgtcgccgc 555 |||||||||||||||||||| Sbjct: 1082155 cacgacggcgacgtcgccgc 1082174
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 538 cgacggcgacgtcgccgccgtcgga 562 |||||||||| |||||||||||||| Sbjct: 1458584 cgacggcgacctcgccgccgtcgga 1458608
>dbj|AP004542.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT08G20, TM0102a, complete sequence Length = 54472 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 aaaatcttgttgtatttcgta 115 ||||||||||||||||||||| Sbjct: 25196 aaaatcttgttgtatttcgta 25216
>ref|XM_482570.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 979 cggcgacgtcgccgccgtcg 960
>ref|XM_469195.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1405 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 568 cggcgacgtcgccgccgtcg 587
>ref|XM_470813.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1254 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 cgacggcgacgtcgccgccg 557 |||||||||||||||||||| Sbjct: 1149 cgacggcgacgtcgccgccg 1168
>gb|AC145388.2| Oryza sativa chromosome 3 BAC OSJNBb0036M02 genomic sequence, complete sequence Length = 125380 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 102986 cggcgacgtcgccgccgtcg 103005
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 cacgacggcgacgtcgccgc 555 |||||||||||||||||||| Sbjct: 3121720 cacgacggcgacgtcgccgc 3121701
>gb|AC132127.3| Mus musculus BAC clone RP23-408B15 from chromosome 16, complete sequence Length = 182676 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ctccatttcattttccatcg 34 |||||||||||||||||||| Sbjct: 162667 ctccatttcattttccatcg 162686
>gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence Length = 140720 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 7820 cggcgacgtcgccgccgtcg 7839
>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence Length = 115079 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 cgacggcgacgtcgccgccg 557 |||||||||||||||||||| Sbjct: 7108 cgacggcgacgtcgccgccg 7127
>ref|XM_380597.1| Gibberella zeae PH-1 chromosome 1 METK_NEUCR S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (FG00421.1) partial mRNA Length = 1209 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gatgtccttgatggcgtcac 423 |||||||||||||||||||| Sbjct: 288 gatgtccttgatggcgtcac 269
>gb|AC102083.12| Mus musculus chromosome 16, clone RP23-269L18, complete sequence Length = 205875 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ctccatttcattttccatcg 34 |||||||||||||||||||| Sbjct: 11038 ctccatttcattttccatcg 11057
>gb|AY327039.1| Oryza sativa (japonica cultivar-group) iron transporter Fe3 mRNA, complete cds Length = 1380 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 542 cggcgacgtcgccgccgtcg 561
>emb|AL158012.14| Human DNA sequence from clone RP11-157A10 on chromosome 9 Contains part of the gene for a novel GLI Kruppel family member zinc finger protein (FLJ38999), complete sequence Length = 124474 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ttttctacccaaaggaaaca 66 |||||||||||||||||||| Sbjct: 62534 ttttctacccaaaggaaaca 62515
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 ggcgacgtcgccgccgtcgg 561 |||||||||||||||||||| Sbjct: 128829 ggcgacgtcgccgccgtcgg 128848
>emb|BX004803.11| Zebrafish DNA sequence from clone CH211-119C20 in linkage group 20 Contains a novel gene simialr to human and mouse CASKIN2 (CASK interacting protein 2), a novel gene for a nucleoside-diphosphate kinase (wu:fk59e05) and a CpG island, complete sequence Length = 167376 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tactccatttcattttccat 32 |||||||||||||||||||| Sbjct: 166726 tactccatttcattttccat 166707
>emb|CR383677.15| Zebrafish DNA sequence from clone CH211-157P16 in linkage group 12, complete sequence Length = 164387 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tactccatttcattttccat 32 |||||||||||||||||||| Sbjct: 125318 tactccatttcattttccat 125337
>gb|DQ397877.1| Cenarchaeum symbiosum clone C06F03, complete sequence Length = 37987 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 cgctcgatgcccatgttcat 463 |||||||||||||||||||| Sbjct: 13103 cgctcgatgcccatgttcat 13122
>gb|AY122115.1| Drosophila melanogaster GH17337 full insert cDNA Length = 3398 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 2089 tcggggaacttctccttgat 2070
>gb|AE005908.1| Caulobacter crescentus CB15 section 234 of 359 of the complete genome Length = 11320 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 1939 cggcgacgtcgccgccgtcg 1920
>ref|NM_167656.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RI, transcript variant I (Pfrx), mRNA Length = 2980 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 1684 tcggggaacttctccttgat 1665
>ref|NM_167655.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RH, transcript variant H (Pfrx), mRNA Length = 2987 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 1691 tcggggaacttctccttgat 1672
>ref|NM_167654.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RF, transcript variant F (Pfrx), mRNA Length = 2919 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 1623 tcggggaacttctccttgat 1604
>ref|NM_167653.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RE, transcript variant E (Pfrx), mRNA Length = 3184 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 1888 tcggggaacttctccttgat 1869
>ref|NM_167652.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RD, transcript variant D (Pfrx), mRNA Length = 2990 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 1694 tcggggaacttctccttgat 1675
>ref|NM_167651.1| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RA, transcript variant A (Pfrx), mRNA Length = 2983 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 1687 tcggggaacttctccttgat 1668
>ref|NM_058104.4| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RB, transcript variant B (Pfrx), mRNA Length = 3383 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 2087 tcggggaacttctccttgat 2068
>ref|NM_058103.2| Drosophila melanogaster 6-phosphofructo-2-kinase CG3400-RG, transcript variant G (Pfrx), mRNA Length = 2930 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 2087 tcggggaacttctccttgat 2068
>gb|AC011071.12|AC011071 Drosophila melanogaster, chromosome X, region 18C-18D, BAC clone BACR27L16, complete sequence Length = 182623 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 110731 tcggggaacttctccttgat 110712
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 21150403 cggcgacgtcgccgccgtcg 21150384
>gb|AC010847.11|AC010847 Drosophila melanogaster, chromosome X, region 18D-18D, BAC clone BACR10M08, complete sequence Length = 180213 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 49211 tcggggaacttctccttgat 49192
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 gcgcacgtcgtcgaggacgc 594 |||||||||||||||||||| Sbjct: 1652692 gcgcacgtcgtcgaggacgc 1652711 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 55601 cggcgacgtcgccgccgtcg 55620
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 579 acgtcgtcgaggacgcggtcgacg 602 |||||||||||| ||||||||||| Sbjct: 1790941 acgtcgtcgaggtcgcggtcgacg 1790964
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 121613 cggcgacgtcgccgccgtcg 121594
>dbj|AK107681.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A08, full insert sequence Length = 1405 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 568 cggcgacgtcgccgccgtcg 587
>emb|AJ331161.1|HSA331161 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DE22RS Length = 714 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 cgacgtcgccgccgtcggag 563 |||||||||||||||||||| Sbjct: 204 cgacgtcgccgccgtcggag 223
>emb|CR385044.5| Zebrafish DNA sequence from clone CH211-51N14 in linkage group 20, complete sequence Length = 59170 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tactccatttcattttccat 32 |||||||||||||||||||| Sbjct: 1350 tactccatttcattttccat 1331
>gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 of 74 of the complete sequence Length = 346474 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 154977 tcggggaacttctccttgat 154958
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 659241 cggcgacgtcgccgccgtcg 659260
>dbj|AB023511.1| Drosophila melanogaster mRNA for 6-phosphofructo 2-kinase/fructose 2,6-bisphosphatase long form, complete cds Length = 2939 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 2087 tcggggaacttctccttgat 2068
>dbj|AB023510.1| Drosophila melanogaster mRNA for 6-phosphofructo 2-kinase/fructose 2,6-bisphosphatase short form, complete cds Length = 2701 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tcggggaacttctccttgat 214 |||||||||||||||||||| Sbjct: 1394 tcggggaacttctccttgat 1375
>dbj|AB070226.1| Oryza sativa OsIRT1 mRNA for iron regulated metal transporter, complete cds Length = 1395 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 cggcgacgtcgccgccgtcg 560 |||||||||||||||||||| Sbjct: 542 cggcgacgtcgccgccgtcg 561 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,098,575 Number of Sequences: 3902068 Number of extensions: 4098575 Number of successful extensions: 115541 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113636 Number of HSP's gapped (non-prelim): 1901 length of query: 633 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 610 effective length of database: 17,143,297,704 effective search space: 10457411599440 effective search space used: 10457411599440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)