Clone Information

BLAST Search Result

Clone Name	rbasd14d23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HIRP5_MOUSE (Q9QZ23) HIRA-interacting protein 5 (mHIRIP5)	50	4e-06
2	NFU1_YEAST (P32860) NifU-like protein, mitochondrial precursor	49	6e-06
3	HIRP5_HUMAN (Q9UMS0) HIRA-interacting protein 5	48	2e-05
4	YH9J_SCHPO (Q9UUB8) NifU-like protein C1709.19c	42	0.001
5	Y2378_PSEPK (Q88KB2) Hypothetical protein PP2378	39	0.011
6	NIFU_ANASL (P33179) Nitrogen fixation protein nifU (Fragment)	39	0.011
7	Y177_PHOPR (Q6LVQ9) Hypothetical protein PBPRA0177	35	0.097
8	NIFU_ANASP (P20628) Nitrogen fixation protein nifU	35	0.097
9	NIFU_ANAAZ (Q43885) Nitrogen fixation protein nifU	35	0.097
10	Y1847_PSEAE (Q9I2P8) Hypothetical protein PA1847	33	0.48
11	Y486_BUCBP (Q89A55) Hypothetical protein bbp_486	33	0.48
12	Y4619_SHEON (Q8E8P2) Hypothetical protein SO4619	33	0.63
13	Y2720_VIBCH (Q9KNL2) Hypothetical protein VC2720	32	0.82
14	NIFU_AZOCH (P23121) Nitrogen fixation protein nifU	32	0.82
15	MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5)	32	1.1
16	NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU	32	1.1
17	Y2603_XYLFA (Q9PAB5) Hypothetical protein Xf2603	32	1.1
18	Y2079_XANCP (Q8P8Z9) Hypothetical protein XCC2079	32	1.1
19	Y1979_XYLFT (Q87A52) Hypothetical protein PD1979	32	1.1
20	Y2117_XANAC (Q8PKQ2) Hypothetical protein XAC2117	32	1.4
21	Y433_HAEIN (P31774) Protein HI0433 (ORFG)	31	1.8
22	GNTY_SHIFL (P63023) Protein gntY	31	1.8
23	GNTY_ECOLI (P63020) Protein gntY	31	1.8
24	GNTY_ECOL6 (P63021) Protein gntY	31	1.8
25	GNTY_ECO57 (P63022) Protein gntY	31	1.8
26	Y2735_PSESM (Q881Z4) Hypothetical protein PSPTO2735	31	2.4
27	NIFU_PLEBO (Q00241) Nitrogen fixation protein nifU (Fragment)	31	2.4
28	Y127_YERPE (Q8ZJI0) Hypothetical protein YPO0127/y3903/YP0128	31	2.4
29	Y864_VIBVU (Q8DDU2) Hypothetical protein VV1_0864	30	3.1
30	Y227_VIBVY (Q7MPY4) Hypothetical protein VV0227	30	3.1
31	DCUA_HELPJ (Q9ZLC0) Anaerobic C4-dicarboxylate transporter dcuA	30	3.1
32	YVN2_AZOVI (P40432) Hypothetical 10.3 kDa protein in vnfA 5'region	30	4.1
33	CHEA_BACSU (P29072) Chemotaxis protein cheA (EC 2.7.13.3)	30	4.1
34	Y378_HAEDU (Q7VNV0) Hypothetical protein HD_0378	30	4.1
35	Y301_WIGBR (Q8D2Q3) Hypothetical protein WIGBR3010	30	4.1
36	Y1557_PASMU (Q9CKP9) Hypothetical protein PM1557	30	5.3
37	Y146_VIBPA (Q87TC4) Hypothetical protein VP0146	30	5.3
38	SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1	30	5.3
39	DCUA_HELPY (O25425) Anaerobic C4-dicarboxylate transporter dcuA	30	5.3
40	Y198_PHOLL (Q7N9W2) Hypothetical protein plu0198	30	5.3
41	Y573_BLOFL (Q7VRN1) Hypothetical protein Bfl573	29	7.0
42	CAPS_CAEBR (Q60PC0) Calcium-dependent secretion activator (Uncoo...	29	7.0
43	PYRB_ACIAD (Q6FCR5) Aspartate carbamoyltransferase (EC 2.1.3.2) ...	29	7.0
44	CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoo...	29	7.0
45	HIS4_LEPIN (Q8F9R5) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylami...	29	7.0
46	HIS4_LEPIC (P62354) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylami...	29	7.0
47	DNAJ2_SYNY3 (P73097) Chaperone protein dnaJ 2	29	7.0
48	SYFA_NITWN (Q3SWK7) Phenylalanyl-tRNA synthetase alpha chain (EC...	29	9.1
49	UPPS_PYRKO (Q5JGE1) Undecaprenyl pyrophosphate synthetase (EC 2....	29	9.1
50	MYF5_HUMAN (P13349) Myogenic factor 5 (Myf-5)	29	9.1
51	RFCS_METKA (Q8TZC4) Replication factor C small subunit (RFC smal...	29	9.1
52	ASNB_BACSU (P54420) Asparagine synthetase [glutamine-hydrolyzing...	29	9.1
53	TR4_RAT (P55094) Orphan nuclear receptor TR4	29	9.1
54	TR4_MOUSE (P49117) Orphan nuclear receptor TR4 (Orphan nuclear r...	29	9.1
55	RGS3_CAEEL (Q18312) Regulator of G protein signaling rgs-3	29	9.1

>HIRP5_MOUSE (Q9QZ23) HIRA-interacting protein 5 (mHIRIP5)|
          Length = 199

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 22/54 (40%), Positives = 37/54 (68%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 368
           EDG+V L+L+G+C+SCPSS  T+  GI+ +L + +   ++ + QV D D+  E+
Sbjct: 142 EDGIVRLKLQGSCTSCPSSIITLKSGIQNML-QFYIPEVEGVEQVMDDDESDEK 194

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>NFU1_YEAST (P32860) NifU-like protein, mitochondrial precursor|
          Length = 256

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = -1

Query: 523 GVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           G V LRL+GAC+SC SS  T+  GIE +LK  + D +K++ Q+ D +Q+
Sbjct: 186 GTVYLRLQGACTSCSSSEVTLKYGIESMLKH-YVDEVKEVIQIMDPEQE 233

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>HIRP5_HUMAN (Q9UMS0) HIRA-interacting protein 5|
          Length = 196

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 21/54 (38%), Positives = 36/54 (66%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 368
           EDG+V L+L+G+C+SCPSS  T+  GI+ +L + +   ++ + QV D +   +E
Sbjct: 140 EDGIVQLKLQGSCTSCPSSIITLKNGIQNML-QFYIPEVEGVEQVMDDESDEKE 192

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>YH9J_SCHPO (Q9UUB8) NifU-like protein C1709.19c|
          Length = 260

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 19/49 (38%), Positives = 33/49 (67%)
 Frame = -1

Query: 523 GVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           G VSL+L GAC +C SS  T+  GI+++LK    + ++++ QV D +++
Sbjct: 190 GTVSLKLRGACRTCSSSAVTLKNGIQQMLKHYIPE-VENVVQVLDPEEE 237

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>Y2378_PSEPK (Q88KB2) Hypothetical protein PP2378|
          Length = 194

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           +DG+  L+  G C  C  +  T+  GIER L E+  + +K +R V D  Q+
Sbjct: 140 DDGIAVLQFGGGCQGCGQADVTLKEGIERTLLERIPE-LKGVRDVTDHSQK 189

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>NIFU_ANASL (P33179) Nitrogen fixation protein nifU (Fragment)|
          Length = 112

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = -1

Query: 520 VVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAI 413
           +V + L+GAC SCPSST T+ + IE  L+++   ++
Sbjct: 72  IVKVVLQGACGSCPSSTATLKIAIESRLRDRINPSL 107

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>Y177_PHOPR (Q6LVQ9) Hypothetical protein PBPRA0177|
          Length = 194

 Score = 35.4 bits (80), Expect = 0.097
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQV 395
           EDGV  L+  G C+ C     T+  GIE+ L  +F   +  +R V
Sbjct: 139 EDGVAILQFGGGCNGCSMVDVTLKEGIEKELLAQFAGELTGVRDV 183

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>NIFU_ANASP (P20628) Nitrogen fixation protein nifU|
          Length = 300

 Score = 35.4 bits (80), Expect = 0.097
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 520 VVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAI 413
           +V + L+GAC SC SST T+ + IE  L+++   ++
Sbjct: 260 IVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSL 295

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>NIFU_ANAAZ (Q43885) Nitrogen fixation protein nifU|
          Length = 300

 Score = 35.4 bits (80), Expect = 0.097
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 520 VVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAI 413
           +V + L+GAC SC SST T+ + IE  L+++   ++
Sbjct: 260 IVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSL 295

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>Y1847_PSEAE (Q9I2P8) Hypothetical protein PA1847|
          Length = 194

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFD 389
           ED +  LR  G C  C     T+  G+E+ L E+  + +K +R V D
Sbjct: 140 EDNIAVLRFGGGCQGCGMVDMTLKDGVEKTLIERIPE-LKGVRDVTD 185

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>Y486_BUCBP (Q89A55) Hypothetical protein bbp_486|
          Length = 191

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGD--AIKDIRQ 398
           E G +SL+  G C+ C     T+  GIE+ +  KF +   + DI Q
Sbjct: 137 ESGYLSLKFSGGCNGCSMVQKTLKEGIEKQILAKFSEFKGVYDITQ 182

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>Y4619_SHEON (Q8E8P2) Hypothetical protein SO4619|
          Length = 192

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 526 DGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFD 389
           +GV  L+  G C+ C     T+  GIE+ L + F   +  +R V D
Sbjct: 138 EGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPGELTGVRDVTD 183

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>Y2720_VIBCH (Q9KNL2) Hypothetical protein VC2720|
          Length = 195

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQ 380
           +DGV  ++  G C+ C     T+  GIE+ L  +F   +  +R   + D+
Sbjct: 140 DDGVALVQFGGGCNGCSMVDVTLKEGIEKELLAQFAGELTAVRDSTEHDR 189

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>NIFU_AZOCH (P23121) Nitrogen fixation protein nifU|
          Length = 309

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 22/116 (18%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPE------- 371
           ED     +  G CS+C       + GIERVL E+     +       G ++ +       
Sbjct: 160 EDVTKHTKRGGGCSAC-------HEGIERVLSEELAPVARSSSCADQGQEEVKVLAPSRL 212

Query: 370 -------ETTPEAVNRH--------LDILRPAIANYGGSVEVLAVDGEDCLVKYDG 248
                    TP+  N          L  +RP +    G VE++ VDG++  VK  G
Sbjct: 213 RSWPRRLRATPKLSNLQRIRRIETVLAAIRPTLQRDKGDVELIDVDGKNIYVKLTG 268

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>MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 20/144 (13%)
 Frame = -1

Query: 496 ACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAI 317
           AC +C   +TTM+      ++E+    +K + Q FD  ++   T P      ++ILR AI
Sbjct: 71  ACKACKRKSTTMDRRKAATMRER--RRLKKVNQAFDTLKRCTTTNPNQRLPKVEILRNAI 128

Query: 316 ANYGGSVEVL--------AVDGEDCLVK-------YDGPESIGSGVKAAIKEKF-----P 197
                  E+L        ++ G+ C           DG     S + +     F     P
Sbjct: 129 RYIESLQELLREQVENYYSLPGQSCSEPTSPTSSCSDGMPECNSPIWSRKSSSFDSVYCP 188

Query: 196 DITNVVFTQ*STGRLA*CHSSAVN 125
           D+ NV  T  S+     C SS V+
Sbjct: 189 DVPNVYATDKSSLSSLDCLSSIVD 212

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>NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU|
          Length = 310

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 517 VSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIK 410
           + +RL GACS C  S  TM MG++  L E  G+ ++
Sbjct: 265 IYVRLTGACSGCSQSAGTM-MGVQAKLVEALGEFVR 299



 Score = 30.0 bits (66), Expect = 4.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = -1

Query: 328 RPAIANYGGSVEVLAVDGEDCLVKYDG-----PESIGS--GVKAAIKEKFPDITNV 182
           RP I   GG VE++ +DG+D  V+  G      +S G+  GV+A + E   +   V
Sbjct: 245 RPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTMMGVQAKLVEALGEFVRV 300

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>Y2603_XYLFA (Q9PAB5) Hypothetical protein Xf2603|
          Length = 199

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 526 DGVVSLRLEGACSSCPSSTTTMNMGIERVLKEK 428
           +GVV LR  G C  C     T+  G+E+ L E+
Sbjct: 140 EGVVLLRFGGGCHGCGMVDVTLKQGVEKTLMER 172

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>Y2079_XANCP (Q8P8Z9) Hypothetical protein XCC2079|
          Length = 199

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 526 DGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGD--AIKDIRQVFDGD 383
           +GVV LR  G C  C  +  T+  GIE+ L  +     A++D      GD
Sbjct: 140 EGVVLLRFGGGCHGCGMADVTLKQGIEKTLMGRLPGVIAVRDATDHATGD 189

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>Y1979_XYLFT (Q87A52) Hypothetical protein PD1979|
          Length = 199

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 526 DGVVSLRLEGACSSCPSSTTTMNMGIERVLKEK 428
           +GVV LR  G C  C  +  T+  G+E+ L ++
Sbjct: 140 EGVVLLRFGGGCHGCGMADVTLKQGVEKTLMDR 172

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>Y2117_XANAC (Q8PKQ2) Hypothetical protein XAC2117|
          Length = 199

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 526 DGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFG--DAIKDIRQVFDGD 383
           +GVV LR  G C  C  +  T+  GIE+ L  +     A++D      GD
Sbjct: 140 EGVVLLRFGGGCHGCGMADVTLKQGIEKTLMGRVPGVTAVRDATDHATGD 189

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>Y433_HAEIN (P31774) Protein HI0433 (ORFG)|
          Length = 198

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQV 395
           EDG   L+  G C+ C     T+  G+E+ L   F + +K  + +
Sbjct: 143 EDGYAVLQFGGGCNGCSMVDVTLKDGVEKQLVSLFPNELKGAKDI 187

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>GNTY_SHIFL (P63023) Protein gntY|
          Length = 191

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQV 395
           EDG   L+  G C+ C     T+  GIE+ L  +F + +K +R +
Sbjct: 137 EDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPE-LKGVRDL 180

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>GNTY_ECOLI (P63020) Protein gntY|
          Length = 191

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQV 395
           EDG   L+  G C+ C     T+  GIE+ L  +F + +K +R +
Sbjct: 137 EDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPE-LKGVRDL 180

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>GNTY_ECOL6 (P63021) Protein gntY|
          Length = 191

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQV 395
           EDG   L+  G C+ C     T+  GIE+ L  +F + +K +R +
Sbjct: 137 EDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPE-LKGVRDL 180

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>GNTY_ECO57 (P63022) Protein gntY|
          Length = 191

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQV 395
           EDG   L+  G C+ C     T+  GIE+ L  +F + +K +R +
Sbjct: 137 EDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPE-LKGVRDL 180

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>Y2735_PSESM (Q881Z4) Hypothetical protein PSPTO2735|
          Length = 197

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 520 VVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           +  L+  G C  C  +  T+  GIER L E+  + +  +R V D  Q+
Sbjct: 146 IAVLQFGGGCQGCGQADVTLKEGIERTLLERIPE-LSGVRDVTDHTQK 192

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>NIFU_PLEBO (Q00241) Nitrogen fixation protein nifU (Fragment)|
          Length = 205

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 517 VSLRLEGACSSCPSSTTTMNMGIERVLK 434
           V + L+GAC SC SST T+   +E  L+
Sbjct: 166 VKVTLKGACGSCASSTATLKDAVEAKLR 193

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>Y127_YERPE (Q8ZJI0) Hypothetical protein YPO0127/y3903/YP0128|
          Length = 191

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -1

Query: 526 DGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQV 395
           +G+  L+  G C+ C     T+  GIE+ L +KF + +K +R +
Sbjct: 138 EGLAILQFGGGCNGCSMVDVTLKEGIEKELLQKFPE-LKGVRDL 180

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>Y864_VIBVU (Q8DDU2) Hypothetical protein VV1_0864|
          Length = 194

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 523 GVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQ 380
           GV  +   G C+ C     T+  GIE+ L ++F   +  +R   + D+
Sbjct: 141 GVAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFSGELTAVRDATEHDR 188

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>Y227_VIBVY (Q7MPY4) Hypothetical protein VV0227|
          Length = 194

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 523 GVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQ 380
           GV  +   G C+ C     T+  GIE+ L ++F   +  +R   + D+
Sbjct: 141 GVAIVAFGGGCNGCSMVDVTLKEGIEKELLQQFSGELTAVRDATEHDR 188

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>DCUA_HELPJ (Q9ZLC0) Anaerobic C4-dicarboxylate transporter dcuA|
          Length = 443

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 266
           W+ TTF+     + +  FT L +DS P+YL R
Sbjct: 174 WIPTTFLACMLTAFVMGFTDLKLDSDPNYLER 205

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>YVN2_AZOVI (P40432) Hypothetical 10.3 kDa protein in vnfA 5'region|
          Length = 96

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVL 437
           +D +V LRL+GAC  C  S  T+  G+ R L
Sbjct: 52  QDNIVRLRLKGACVGCAMSAQTLG-GVRREL 81

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>CHEA_BACSU (P29072) Chemotaxis protein cheA (EC 2.7.13.3)|
          Length = 671

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = -1

Query: 451 IERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNR------HLDILRPAIANYGGSVEV 290
           +ERV+ EK  + ++D  Q+++    P  +T + ++        LD+++  + + GGSV V
Sbjct: 463 LERVITEKEAETLED-NQIYELIFAPGFSTADQISDISGRGVGLDVVKNKLESLGGSVSV 521

Query: 289 LAVDGEDCLVKYDGP 245
            + +G+  L     P
Sbjct: 522 KSAEGQGSLFSIQLP 536

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>Y378_HAEDU (Q7VNV0) Hypothetical protein HD_0378|
          Length = 199

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQV 395
           ED    L+  G C+ C     T+  GIE+ L   F   +K ++ V
Sbjct: 144 EDKYAILQFGGGCNGCSMVDVTLKEGIEKQLLATFPTELKGVKDV 188

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>Y301_WIGBR (Q8D2Q3) Hypothetical protein WIGBR3010|
          Length = 184

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFD 389
           E+  V L+  G C+ C  +  T+  GIE+ +K+ F + IK +  + D
Sbjct: 130 ENMFVILKFFGGCNGCSMAKVTLKEGIEKEIKKNFPN-IKGVIDITD 175

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>Y1557_PASMU (Q9CKP9) Hypothetical protein PM1557|
          Length = 194

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQV 395
           EDG   L+  G C+ C     T+  GIE+ L   F   ++  + V
Sbjct: 139 EDGYAILQFGGGCNGCSMVDVTLKDGIEKQLLSLFPGELQGAKDV 183

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>Y146_VIBPA (Q87TC4) Hypothetical protein VP0146|
          Length = 194

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQ 380
           E GV  +   G C+ C     T+  GIE+ L  +F   +  +R   + D+
Sbjct: 139 EAGVAIVAFGGGCNGCSMVDVTLKEGIEKELLNQFVGELTAVRDATEHDR 188

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>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1|
          Length = 881

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 15/57 (26%)
 Frame = -3

Query: 488 QLSQLDDDDEHGHRASAQGE---------------VR*RHQGHPPGVRRGPATRRDD 363
           ++ Q DDD+E      AQG                 R    G PPGVR G +T  +D
Sbjct: 616 RIQQFDDDEEEEDEEEAQGSGESDGEDGAWQGSQLARGARLGQPPGVRSGGSTDSED 672

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>DCUA_HELPY (O25425) Anaerobic C4-dicarboxylate transporter dcuA|
          Length = 443

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 266
           W+ TTF+     + +  FT L +DS P YL R
Sbjct: 174 WIPTTFLACMLTAFIMGFTDLKLDSDPHYLER 205

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>Y198_PHOLL (Q7N9W2) Hypothetical protein plu0198|
          Length = 191

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 529 EDGVVSLRLEGACSSCPSSTTTMNMGIERVLKEKFGD--AIKDIRQ 398
           +DG   L+  G C+ C     T+  GIE+ L   F +   +KD+ +
Sbjct: 137 DDGFAILQFGGGCNGCSMVDVTLKEGIEKELLNMFPELKGVKDLTE 182

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>Y573_BLOFL (Q7VRN1) Hypothetical protein Bfl573|
          Length = 205

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 526 DGVVSLRLEGACSSCPSSTTTMNMGIERVLKE 431
           D +  L+  G C+ C  +  T+  GIE+ LK+
Sbjct: 151 DSIAILKFHGGCNGCAMAFYTIKEGIEKTLKK 182

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>CAPS_CAEBR (Q60PC0) Calcium-dependent secretion activator (Uncoordinated|
           protein 31)
          Length = 1261

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 334 ILRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEKFPDI 191
           ++ PA+ +Y  +     V G  C+    GPE +G+ V    KEKF +I
Sbjct: 699 LIDPALIHYSFAFCASHVHGNRCMPDRQGPEGVGT-VTLEEKEKFQEI 745

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>PYRB_ACIAD (Q6FCR5) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate|
           transcarbamylase) (ATCase)
          Length = 338

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -1

Query: 439 LKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAIANYGGSVEVLAVDGEDCLV 260
           L  K  D +KD   +     Q E     A++   +  R     YG + E LA+   DC+V
Sbjct: 225 LFNKMDDGVKDCDVIIALRIQNERIDSPALSSQAEFYRM----YGLNQERLALAKPDCIV 280

Query: 259 KYDGPESIGSGVKAAIKE 206
            + GP + G  + ++I +
Sbjct: 281 MHPGPMNRGVEIDSSIAD 298

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>CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoordinated|
           protein 31)
          Length = 1260

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 334 ILRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEKFPDI 191
           ++ PA+ +Y  +     V G  C+    GPE +G+ V    KEKF +I
Sbjct: 701 LIDPALIHYSFAFCASHVHGNRCMPDRQGPEGVGT-VTLEEKEKFQEI 747

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>HIS4_LEPIN (Q8F9R5) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 241

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 337 DILRPAIANYGGSVEVLAVDGEDCLVKYDGPE 242
           D+L+ A+ NYG    V+AVD  D +VK  G E
Sbjct: 111 DLLKYALDNYGKERVVVAVDARDGIVKIAGWE 142

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>HIS4_LEPIC (P62354) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 241

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 337 DILRPAIANYGGSVEVLAVDGEDCLVKYDGPE 242
           D+L+ A+ NYG    V+AVD  D +VK  G E
Sbjct: 111 DLLKYALDNYGKERVVVAVDARDGIVKIAGWE 142

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>DNAJ2_SYNY3 (P73097) Chaperone protein dnaJ 2|
          Length = 307

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 325 PAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEK-FPD 194
           P+ A  GG++EV+ +DG   LVK   P  + +G K  + +K FP+
Sbjct: 220 PSEAILGGAIEVMTIDG---LVKMTVPAGLKNGQKLRLAKKGFPN 261

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>SYFA_NITWN (Q3SWK7) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 369

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -1

Query: 457 MGIERVLKEKFGDAIKDIRQVFDGD 383
           MGI+R+   K+G  I D+RQ+F+GD
Sbjct: 324 MGIDRITMLKYG--IADLRQLFEGD 346

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>UPPS_PYRKO (Q5JGE1) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 264

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 475 STTTMNMGIERVLKEKFGDAIKDI-RQVFDGDQQPEETTPEAVNRHL 338
           S   +N+ +    + +  DA+++I R V +G  +PE+   EA+ R+L
Sbjct: 154 SNYNLNIALAYGGRSEIADAVREIVRDVLEGKIKPEDIDEEAIKRYL 200

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>MYF5_HUMAN (P13349) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 20/144 (13%)
 Frame = -1

Query: 496 ACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAI 317
           AC +C   +TTM+      ++E+    +K + Q F+  ++   T P      ++ILR AI
Sbjct: 71  ACKACKRKSTTMDRRKAATMRER--RRLKKVNQAFETLKRCTTTNPNQRLPKVEILRNAI 128

Query: 316 ANYGGSVEVL--------AVDGEDCLVK-------YDGPESIGSGVKAAIKEKF-----P 197
                  E+L        ++ G+ C           DG     S V +     F     P
Sbjct: 129 RYIESLQELLREQVENYYSLPGQSCSEPTSPTSNCSDGMPECNSPVWSRKSSTFDSIYCP 188

Query: 196 DITNVVFTQ*STGRLA*CHSSAVN 125
           D++NV  T  ++     C S+ V+
Sbjct: 189 DVSNVYATDKNSLSSLDCLSNIVD 212

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>RFCS_METKA (Q8TZC4) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit) [Contains: Mkn RFC intein]
          Length = 635

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 421 DAIKDI-RQVFDGDQQPEETTPEAVN 347
           D ++ + R++FD D+ PEE  PE VN
Sbjct: 574 DVVRQVHREIFDMDEIPEEAIPELVN 599

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>ASNB_BACSU (P54420) Asparagine synthetase [glutamine-hydrolyzing] 1 (EC|
           6.3.5.4)
          Length = 632

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 341 VPVHRLRRRLFGLLVPVEHLA--DVLDGVTELLLEHSLDAHVH 463
           VP H L R+  G  VP+ H    ++ + V  ++ E   DA++H
Sbjct: 535 VPEHVLNRKKLGFPVPIRHWLKNEMNEWVRNIIQESQTDAYIH 577

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>TR4_RAT (P55094) Orphan nuclear receptor TR4|
          Length = 596

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
 Frame = -1

Query: 385 DQQPEETTPEAVNRHLDILRPAI----------------ANYGGSVEVLAVDGEDCLVKY 254
           + QPE+ +   + R  D L  A+                A+ GGS+ V++ D    +++ 
Sbjct: 298 EMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEV 357

Query: 253 DGPESIGSGV--KAAIKEKFPDITNVVFTQ*STGRL 152
           +GP    + V  K  +    P+  NV +   S  RL
Sbjct: 358 EGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRL 393

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>TR4_MOUSE (P49117) Orphan nuclear receptor TR4 (Orphan nuclear receptor TAK1)|
          Length = 596

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
 Frame = -1

Query: 385 DQQPEETTPEAVNRHLDILRPAI----------------ANYGGSVEVLAVDGEDCLVKY 254
           + QPE+ +   + R  D L  A+                A+ GGS+ V++ D    +++ 
Sbjct: 298 EMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEV 357

Query: 253 DGPESIGSGV--KAAIKEKFPDITNVVFTQ*STGRL 152
           +GP    + V  K  +    P+  NV +   S  RL
Sbjct: 358 EGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRL 393

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>RGS3_CAEEL (Q18312) Regulator of G protein signaling rgs-3|
          Length = 363

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 502 EGACSSCPSSTTTMNMGI--ERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDIL 329
           +G+ +   SS  ++   +  E +  E+F  AIK++R++ + DQ P     E    +L+ L
Sbjct: 169 QGSINLSSSSMKSLRNAVASETLDMEEFAPAIKEVRRLLENDQFPRFRRSELYLEYLEEL 228

Query: 328 RP 323
            P
Sbjct: 229 LP 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,716,693
Number of Sequences: 219361
Number of extensions: 1736288
Number of successful extensions: 5571
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 5349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5566
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result