ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14d22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PMM_ARATH (O80840) Probable phosphomannomutase (EC 5.4.2.8) (PMM) 259 5e-69
2PMM_SCHPO (Q9UTJ2) Phosphomannomutase (EC 5.4.2.8) (PMM) 212 7e-55
3PMM_CANAL (P31353) Phosphomannomutase (EC 5.4.2.8) (PMM) 198 1e-50
4PMM_YEAST (P07283) Phosphomannomutase (EC 5.4.2.8) (PMM) 196 4e-50
5PMM2_MOUSE (Q9Z2M7) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2) 189 8e-48
6PMM2_MACFA (Q60HD6) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2) 188 1e-47
7PMM_DROME (Q9VTZ6) Probable phosphomannomutase (EC 5.4.2.8) (PMM) 187 2e-47
8PMM2_HUMAN (O15305) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2) 187 3e-47
9PMM_CAEEL (Q9XUE6) Probable phosphomannomutase (EC 5.4.2.8) (PMM) 185 9e-47
10PMM1_HUMAN (Q92871) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1) (P... 174 2e-43
11PMM1_MOUSE (O35621) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1) 173 5e-43
12PMM_BABBO (O43976) Phosphomannomutase (EC 5.4.2.8) 144 3e-34
13Y33B_DROME (Q9U1M2) Hypothetical protein CG32795 in chromosome 1 35 0.20
14XE7_HUMAN (Q02040) B-lymphocyte antigen precursor (B-lymphocyte ... 33 0.74
15WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY... 32 1.3
16EA31_LAMBD (P03753) Protein ea31 32 1.3
17YT72_CAEEL (Q11086) Hypothetical protein C01C10.2 30 8.2

>PMM_ARATH (O80840) Probable phosphomannomutase (EC 5.4.2.8) (PMM)|
          Length = 246

 Score =  259 bits (662), Expect = 5e-69
 Identities = 115/141 (81%), Positives = 136/141 (96%)
 Frame = -2

Query: 652 HYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREK 473
           HYIADLDIPIKRGTFIEFR+GM+NVSPIGRNCSQEERD+FE+YDKV N+RPKMV+ LRE+
Sbjct: 106 HYIADLDIPIKRGTFIEFRNGMLNVSPIGRNCSQEERDEFERYDKVQNIRPKMVAELRER 165

Query: 472 FAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTYKGGNDHEIFESDRT 293
           FAHLNLTFSIGGQISFDVFP+GWDKTYCL+YLE+F EIHFFGDKTY+GGND+EI+ES +T
Sbjct: 166 FAHLNLTFSIGGQISFDVFPKGWDKTYCLQYLEDFSEIHFFGDKTYEGGNDYEIYESPKT 225

Query: 292 VGHTVTSPNDTVQQCKSIFLS 230
           +GH+VTSP+DTV +CK++F+S
Sbjct: 226 IGHSVTSPDDTVAKCKALFMS 246



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>PMM_SCHPO (Q9UTJ2) Phosphomannomutase (EC 5.4.2.8) (PMM)|
          Length = 257

 Score =  212 bits (540), Expect = 7e-55
 Identities = 97/141 (68%), Positives = 118/141 (83%), Gaps = 2/141 (1%)
 Frame = -2

Query: 652 HYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREK 473
           HYIADLDIP+KRGTFIEFR+GMIN+SP+GRN + EER++FE++DK   +R  MV VLREK
Sbjct: 115 HYIADLDIPVKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREK 174

Query: 472 FAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESD 299
           F    LTFSIGGQISFDVFP GWDKTYCL+++E+  F  IHFFGDKTYKGGND+EIF   
Sbjct: 175 FKDYGLTFSIGGQISFDVFPAGWDKTYCLQHVEKEGFDTIHFFGDKTYKGGNDYEIFVDP 234

Query: 298 RTVGHTVTSPNDTVQQCKSIF 236
           RT+GH+VT+P+DT+ + K IF
Sbjct: 235 RTIGHSVTNPDDTIAELKKIF 255



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>PMM_CANAL (P31353) Phosphomannomutase (EC 5.4.2.8) (PMM)|
          Length = 252

 Score =  198 bits (503), Expect = 1e-50
 Identities = 87/140 (62%), Positives = 115/140 (82%), Gaps = 2/140 (1%)
 Frame = -2

Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470
           Y++D+D+PI+RGTFIEFR+GMINVSPIGRN S +ER+D+EK+DK H++R  MV  L+++F
Sbjct: 110 YLSDIDLPIRRGTFIEFRNGMINVSPIGRNASTQERNDYEKFDKQHHIRETMVEALKKEF 169

Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296
               LT+SIGGQISFDVFP GWDKTYCL+++E+  F+ IHFFGDK+YKGGND+EI+   R
Sbjct: 170 PDFGLTYSIGGQISFDVFPTGWDKTYCLQHVEDEHFENIHFFGDKSYKGGNDYEIYNDPR 229

Query: 295 TVGHTVTSPNDTVQQCKSIF 236
           T+GH V SP+DT++     F
Sbjct: 230 TIGHAVNSPDDTIRILNETF 249



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>PMM_YEAST (P07283) Phosphomannomutase (EC 5.4.2.8) (PMM)|
          Length = 254

 Score =  196 bits (499), Expect = 4e-50
 Identities = 89/140 (63%), Positives = 115/140 (82%), Gaps = 2/140 (1%)
 Frame = -2

Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470
           Y++++D+P +RGTF+EFR+GMINVSPIGRN S EER++FE+YDK H +R K V  L+++F
Sbjct: 113 YLSEIDLPKRRGTFLEFRNGMINVSPIGRNASTEERNEFERYDKEHQIRAKFVEALKKEF 172

Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296
               LTFSIGGQISFDVFP GWDKTYCL+++E+  FKEIHFFGDKT  GGND+EIF  +R
Sbjct: 173 PDYGLTFSIGGQISFDVFPAGWDKTYCLQHVEKDGFKEIHFFGDKTMVGGNDYEIFVDER 232

Query: 295 TVGHTVTSPNDTVQQCKSIF 236
           T+GH+V SP+DTV+    +F
Sbjct: 233 TIGHSVQSPDDTVKILTELF 252



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>PMM2_MOUSE (Q9Z2M7) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)|
          Length = 242

 Score =  189 bits (479), Expect = 8e-48
 Identities = 90/140 (64%), Positives = 112/140 (80%), Gaps = 2/140 (1%)
 Frame = -2

Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470
           YIA++ +P KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK  ++R K V+ LR++F
Sbjct: 102 YIANIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKEHIRQKFVADLRKEF 161

Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296
           A   LTFSIGGQIS DVFP+GWDK YCLR+LE   +K I+FFGDKT  GGNDHEIF   R
Sbjct: 162 AGKGLTFSIGGQISIDVFPEGWDKRYCLRHLEHAGYKTIYFFGDKTMPGGNDHEIFTDPR 221

Query: 295 TVGHTVTSPNDTVQQCKSIF 236
           TVG+TVT+P DT + C+ +F
Sbjct: 222 TVGYTVTAPEDTRRICEGLF 241



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>PMM2_MACFA (Q60HD6) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)|
          Length = 246

 Score =  188 bits (478), Expect = 1e-47
 Identities = 90/140 (64%), Positives = 111/140 (79%), Gaps = 2/140 (1%)
 Frame = -2

Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470
           YIA + +P KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK  N+R K V+ LR++F
Sbjct: 106 YIAKVKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEF 165

Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296
           A   LTFSIGGQISFDVFP GWDK YCLR++E   +K I+FFGDKT  GGNDHEIF   R
Sbjct: 166 AGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPR 225

Query: 295 TVGHTVTSPNDTVQQCKSIF 236
           TVG++VT+P DT + C+ +F
Sbjct: 226 TVGYSVTAPEDTRRICEELF 245



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>PMM_DROME (Q9VTZ6) Probable phosphomannomutase (EC 5.4.2.8) (PMM)|
          Length = 254

 Score =  187 bits (476), Expect = 2e-47
 Identities = 85/133 (63%), Positives = 109/133 (81%), Gaps = 3/133 (2%)
 Frame = -2

Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470
           Y+++LD+PIKRGTFIEFR+GM+NV PIGR C++EER+ F +YD  H VR KM+  L+++F
Sbjct: 112 YLSELDVPIKRGTFIEFRNGMMNVCPIGRQCTREERNMFAEYDIEHKVREKMIKDLKQEF 171

Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLE---EFKEIHFFGDKTYKGGNDHEIFESD 299
           A ++LT+SIGGQISFDVFP GWDKTYCLR++E   +FKEIHFFGDKT  GGND+EI+   
Sbjct: 172 ADVDLTYSIGGQISFDVFPHGWDKTYCLRHIEAHYKFKEIHFFGDKTEPGGNDYEIYSDP 231

Query: 298 RTVGHTVTSPNDT 260
           RT+ H V +P DT
Sbjct: 232 RTISHRVYTPKDT 244



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>PMM2_HUMAN (O15305) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)|
          Length = 246

 Score =  187 bits (474), Expect = 3e-47
 Identities = 89/140 (63%), Positives = 111/140 (79%), Gaps = 2/140 (1%)
 Frame = -2

Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470
           YIA + +P KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK  N+R K V+ LR++F
Sbjct: 106 YIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEF 165

Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296
           A   LTFSIGGQISFDVFP GWDK YCLR++E   +K I+FFGDKT  GGNDHEIF   R
Sbjct: 166 AGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPR 225

Query: 295 TVGHTVTSPNDTVQQCKSIF 236
           T+G++VT+P DT + C+ +F
Sbjct: 226 TMGYSVTAPEDTRRICELLF 245



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>PMM_CAEEL (Q9XUE6) Probable phosphomannomutase (EC 5.4.2.8) (PMM)|
          Length = 245

 Score =  185 bits (470), Expect = 9e-47
 Identities = 84/138 (60%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
 Frame = -2

Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470
           Y++D+ +P+KRG F+EFR+GMIN+SPIGR+CSQEER  F ++DK H +R K    LREKF
Sbjct: 103 YMSDIQLPVKRGNFVEFRNGMINLSPIGRSCSQEERMQFVEFDKKHGIRQKFTEQLREKF 162

Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYL-EEFKEIHFFGDKTYKGGNDHEIFESDRT 293
               L F+IGGQIS DVFP GWDKT+CL+YL  +F  IHFFGDKT  GGNDHEIF  +RT
Sbjct: 163 GQYGLQFAIGGQISVDVFPTGWDKTFCLQYLVPDFDTIHFFGDKTAPGGNDHEIFADERT 222

Query: 292 VGHTVTSPNDTVQQCKSI 239
           VGHTV  P DT +  +++
Sbjct: 223 VGHTVEGPEDTRKHVENV 240



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>PMM1_HUMAN (Q92871) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1) (PMMH-22)|
          Length = 262

 Score =  174 bits (441), Expect = 2e-43
 Identities = 84/143 (58%), Positives = 104/143 (72%), Gaps = 2/143 (1%)
 Frame = -2

Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470
           Y+A L +P KRGTFIEFR+GM+N+SPIGR+C+ EER +F + DK   +R K V  L+ +F
Sbjct: 115 YMALLRLPKKRGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEF 174

Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296
           A   L FS GG ISFDVFP+GWDK YCL  L++  F  IHFFG++T  GGND EIF   R
Sbjct: 175 AGKGLRFSRGGMISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPR 234

Query: 295 TVGHTVTSPNDTVQQCKSIFLSE 227
           TVGH+V SP DTVQ+C+ IF  E
Sbjct: 235 TVGHSVVSPQDTVQRCREIFFPE 257



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>PMM1_MOUSE (O35621) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1)|
          Length = 262

 Score =  173 bits (438), Expect = 5e-43
 Identities = 84/143 (58%), Positives = 104/143 (72%), Gaps = 2/143 (1%)
 Frame = -2

Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470
           Y+A L +P KRGTFIEFR+GM+NVSPIGR+C+ EER +F + DK   +R K V  L+ +F
Sbjct: 115 YMALLRLPKKRGTFIEFRNGMLNVSPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEF 174

Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296
           A   L FS GG ISFDVFP+GWDK YCL  L+E  F  IHFFG++T  GGND EI+   R
Sbjct: 175 AGKGLRFSRGGMISFDVFPEGWDKRYCLDSLDEDSFDIIHFFGNETSPGGNDFEIYADPR 234

Query: 295 TVGHTVTSPNDTVQQCKSIFLSE 227
           TVGH+V SP DTVQ+C+ +F  E
Sbjct: 235 TVGHSVVSPQDTVQRCRELFFPE 257



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>PMM_BABBO (O43976) Phosphomannomutase (EC 5.4.2.8)|
          Length = 246

 Score =  144 bits (362), Expect = 3e-34
 Identities = 69/139 (49%), Positives = 91/139 (65%), Gaps = 2/139 (1%)
 Frame = -2

Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470
           YIADLDIP KRGTFIE R  +IN+ P GRNCS  +R  F +YD +H+VR K++ VL+ +F
Sbjct: 104 YIADLDIPTKRGTFIEHRKSLINICPPGRNCSMVDRRRFVEYDSIHHVRQKLIQVLKSQF 163

Query: 469 --AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTYKGGNDHEIFESDR 296
                 L+F  GGQIS DV+P+ W K+  L ++ +   IHFFGD T +GGND EI+    
Sbjct: 164 DSDDCPLSFVAGGQISIDVYPKAWSKSIALSHIGKCDVIHFFGDNTREGGNDFEIYNHPD 223

Query: 295 TVGHTVTSPNDTVQQCKSI 239
            +GHTVT   D V Q + +
Sbjct: 224 VIGHTVTGYKDLVNQLEEL 242



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>Y33B_DROME (Q9U1M2) Hypothetical protein CG32795 in chromosome 1|
          Length = 387

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 631 IPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNV 506
           +P K G +++   G +NVS + RN     +DD+EK+  + NV
Sbjct: 95  LPAKSGRYLQIILGDVNVSILNRNDKVRYKDDYEKFKLILNV 136



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>XE7_HUMAN (Q02040) B-lymphocyte antigen precursor (B-lymphocyte surface|
           antigen) (721P) (Protein XE7)
          Length = 695

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 535 FEKYDKVHNVRPKMVSVLREKFAHLNL-TFSIGGQISFDVFPQ 410
           FEK+ ++ NV   M+   RE+    N  TFS GG ++F+ + Q
Sbjct: 178 FEKFGEIRNVDIPMLDPYREEMTGRNFHTFSFGGHLNFEAYVQ 220



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>WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY DNA-binding|
            protein 19)
          Length = 1895

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
 Frame = -2

Query: 532  EKYDKVHNVRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLE----EFK 365
            EK D  ++   K +     K  HL  T ++ G IS + FP    +  CLR+L+    + K
Sbjct: 1375 EKLDLENSRHLKNLPTSIYKLKHLE-TLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIK 1433

Query: 364  EIHFFGDKTYKGGNDHEIFESDRTVGHTVTSPN 266
            E+      +Y    D  +F   R     VT+PN
Sbjct: 1434 ELP--SSISYLTALDELLFVDSRRNSPVVTNPN 1464



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>EA31_LAMBD (P03753) Protein ea31|
          Length = 296

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
 Frame = -2

Query: 604 EFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVS---VLREKFAHLNLTFSIGGQ 434
           EF    IN+ P  R+C+  E+      D+VH      +      RE++ + N      G 
Sbjct: 131 EFSVMPINLVPSCRDCNMGEKGQVFAVDEVHQAIHPYIDKDIFFREQWVYANFVSGTPGA 190

Query: 433 ISFDV-FPQGWDKTYCLRYLEEFK 365
           ISF V  P  W +    R L  FK
Sbjct: 191 ISFYVECPANWRQEDKHRALHHFK 214



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>YT72_CAEEL (Q11086) Hypothetical protein C01C10.2|
          Length = 204

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 26/109 (23%)
 Frame = -2

Query: 463 LNLTFSIGGQISFDVFPQ--------GWDKT------YCLRYLEEFKEIHFFGDKTY--- 335
           LNLTFS   +IS DVF Q         W +       Y + Y+++  E+ F  D  +   
Sbjct: 13  LNLTFSPKSEISEDVFKQMFSSLDRLWWSRLVISIRGYVINYVQQNDEVLFSCDDAFIKI 72

Query: 334 ------KGGNDHEIFESDRTVGHTVTSPNDTVQQC---KSIFLSE*SPD 215
                 +     + FE    + H +   N  +Q     KSI  ++ SP+
Sbjct: 73  HQKLAERNSQFEDAFEYLTAIFHVIREKNTLIQMISNPKSISTTKISPN 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,372,734
Number of Sequences: 219361
Number of extensions: 2277338
Number of successful extensions: 5918
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5907
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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