Clone Name | rbasd14d22 |
---|---|
Clone Library Name | barley_pub |
>PMM_ARATH (O80840) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 246 Score = 259 bits (662), Expect = 5e-69 Identities = 115/141 (81%), Positives = 136/141 (96%) Frame = -2 Query: 652 HYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREK 473 HYIADLDIPIKRGTFIEFR+GM+NVSPIGRNCSQEERD+FE+YDKV N+RPKMV+ LRE+ Sbjct: 106 HYIADLDIPIKRGTFIEFRNGMLNVSPIGRNCSQEERDEFERYDKVQNIRPKMVAELRER 165 Query: 472 FAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTYKGGNDHEIFESDRT 293 FAHLNLTFSIGGQISFDVFP+GWDKTYCL+YLE+F EIHFFGDKTY+GGND+EI+ES +T Sbjct: 166 FAHLNLTFSIGGQISFDVFPKGWDKTYCLQYLEDFSEIHFFGDKTYEGGNDYEIYESPKT 225 Query: 292 VGHTVTSPNDTVQQCKSIFLS 230 +GH+VTSP+DTV +CK++F+S Sbjct: 226 IGHSVTSPDDTVAKCKALFMS 246
>PMM_SCHPO (Q9UTJ2) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 257 Score = 212 bits (540), Expect = 7e-55 Identities = 97/141 (68%), Positives = 118/141 (83%), Gaps = 2/141 (1%) Frame = -2 Query: 652 HYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREK 473 HYIADLDIP+KRGTFIEFR+GMIN+SP+GRN + EER++FE++DK +R MV VLREK Sbjct: 115 HYIADLDIPVKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREK 174 Query: 472 FAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESD 299 F LTFSIGGQISFDVFP GWDKTYCL+++E+ F IHFFGDKTYKGGND+EIF Sbjct: 175 FKDYGLTFSIGGQISFDVFPAGWDKTYCLQHVEKEGFDTIHFFGDKTYKGGNDYEIFVDP 234 Query: 298 RTVGHTVTSPNDTVQQCKSIF 236 RT+GH+VT+P+DT+ + K IF Sbjct: 235 RTIGHSVTNPDDTIAELKKIF 255
>PMM_CANAL (P31353) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 252 Score = 198 bits (503), Expect = 1e-50 Identities = 87/140 (62%), Positives = 115/140 (82%), Gaps = 2/140 (1%) Frame = -2 Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470 Y++D+D+PI+RGTFIEFR+GMINVSPIGRN S +ER+D+EK+DK H++R MV L+++F Sbjct: 110 YLSDIDLPIRRGTFIEFRNGMINVSPIGRNASTQERNDYEKFDKQHHIRETMVEALKKEF 169 Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296 LT+SIGGQISFDVFP GWDKTYCL+++E+ F+ IHFFGDK+YKGGND+EI+ R Sbjct: 170 PDFGLTYSIGGQISFDVFPTGWDKTYCLQHVEDEHFENIHFFGDKSYKGGNDYEIYNDPR 229 Query: 295 TVGHTVTSPNDTVQQCKSIF 236 T+GH V SP+DT++ F Sbjct: 230 TIGHAVNSPDDTIRILNETF 249
>PMM_YEAST (P07283) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 254 Score = 196 bits (499), Expect = 4e-50 Identities = 89/140 (63%), Positives = 115/140 (82%), Gaps = 2/140 (1%) Frame = -2 Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470 Y++++D+P +RGTF+EFR+GMINVSPIGRN S EER++FE+YDK H +R K V L+++F Sbjct: 113 YLSEIDLPKRRGTFLEFRNGMINVSPIGRNASTEERNEFERYDKEHQIRAKFVEALKKEF 172 Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296 LTFSIGGQISFDVFP GWDKTYCL+++E+ FKEIHFFGDKT GGND+EIF +R Sbjct: 173 PDYGLTFSIGGQISFDVFPAGWDKTYCLQHVEKDGFKEIHFFGDKTMVGGNDYEIFVDER 232 Query: 295 TVGHTVTSPNDTVQQCKSIF 236 T+GH+V SP+DTV+ +F Sbjct: 233 TIGHSVQSPDDTVKILTELF 252
>PMM2_MOUSE (Q9Z2M7) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 242 Score = 189 bits (479), Expect = 8e-48 Identities = 90/140 (64%), Positives = 112/140 (80%), Gaps = 2/140 (1%) Frame = -2 Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470 YIA++ +P KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK ++R K V+ LR++F Sbjct: 102 YIANIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKEHIRQKFVADLRKEF 161 Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296 A LTFSIGGQIS DVFP+GWDK YCLR+LE +K I+FFGDKT GGNDHEIF R Sbjct: 162 AGKGLTFSIGGQISIDVFPEGWDKRYCLRHLEHAGYKTIYFFGDKTMPGGNDHEIFTDPR 221 Query: 295 TVGHTVTSPNDTVQQCKSIF 236 TVG+TVT+P DT + C+ +F Sbjct: 222 TVGYTVTAPEDTRRICEGLF 241
>PMM2_MACFA (Q60HD6) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 246 Score = 188 bits (478), Expect = 1e-47 Identities = 90/140 (64%), Positives = 111/140 (79%), Gaps = 2/140 (1%) Frame = -2 Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470 YIA + +P KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK N+R K V+ LR++F Sbjct: 106 YIAKVKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEF 165 Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296 A LTFSIGGQISFDVFP GWDK YCLR++E +K I+FFGDKT GGNDHEIF R Sbjct: 166 AGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPR 225 Query: 295 TVGHTVTSPNDTVQQCKSIF 236 TVG++VT+P DT + C+ +F Sbjct: 226 TVGYSVTAPEDTRRICEELF 245
>PMM_DROME (Q9VTZ6) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 254 Score = 187 bits (476), Expect = 2e-47 Identities = 85/133 (63%), Positives = 109/133 (81%), Gaps = 3/133 (2%) Frame = -2 Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470 Y+++LD+PIKRGTFIEFR+GM+NV PIGR C++EER+ F +YD H VR KM+ L+++F Sbjct: 112 YLSELDVPIKRGTFIEFRNGMMNVCPIGRQCTREERNMFAEYDIEHKVREKMIKDLKQEF 171 Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLE---EFKEIHFFGDKTYKGGNDHEIFESD 299 A ++LT+SIGGQISFDVFP GWDKTYCLR++E +FKEIHFFGDKT GGND+EI+ Sbjct: 172 ADVDLTYSIGGQISFDVFPHGWDKTYCLRHIEAHYKFKEIHFFGDKTEPGGNDYEIYSDP 231 Query: 298 RTVGHTVTSPNDT 260 RT+ H V +P DT Sbjct: 232 RTISHRVYTPKDT 244
>PMM2_HUMAN (O15305) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 246 Score = 187 bits (474), Expect = 3e-47 Identities = 89/140 (63%), Positives = 111/140 (79%), Gaps = 2/140 (1%) Frame = -2 Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470 YIA + +P KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK N+R K V+ LR++F Sbjct: 106 YIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEF 165 Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296 A LTFSIGGQISFDVFP GWDK YCLR++E +K I+FFGDKT GGNDHEIF R Sbjct: 166 AGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPR 225 Query: 295 TVGHTVTSPNDTVQQCKSIF 236 T+G++VT+P DT + C+ +F Sbjct: 226 TMGYSVTAPEDTRRICELLF 245
>PMM_CAEEL (Q9XUE6) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 245 Score = 185 bits (470), Expect = 9e-47 Identities = 84/138 (60%), Positives = 105/138 (76%), Gaps = 1/138 (0%) Frame = -2 Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470 Y++D+ +P+KRG F+EFR+GMIN+SPIGR+CSQEER F ++DK H +R K LREKF Sbjct: 103 YMSDIQLPVKRGNFVEFRNGMINLSPIGRSCSQEERMQFVEFDKKHGIRQKFTEQLREKF 162 Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYL-EEFKEIHFFGDKTYKGGNDHEIFESDRT 293 L F+IGGQIS DVFP GWDKT+CL+YL +F IHFFGDKT GGNDHEIF +RT Sbjct: 163 GQYGLQFAIGGQISVDVFPTGWDKTFCLQYLVPDFDTIHFFGDKTAPGGNDHEIFADERT 222 Query: 292 VGHTVTSPNDTVQQCKSI 239 VGHTV P DT + +++ Sbjct: 223 VGHTVEGPEDTRKHVENV 240
>PMM1_HUMAN (Q92871) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1) (PMMH-22)| Length = 262 Score = 174 bits (441), Expect = 2e-43 Identities = 84/143 (58%), Positives = 104/143 (72%), Gaps = 2/143 (1%) Frame = -2 Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470 Y+A L +P KRGTFIEFR+GM+N+SPIGR+C+ EER +F + DK +R K V L+ +F Sbjct: 115 YMALLRLPKKRGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEF 174 Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296 A L FS GG ISFDVFP+GWDK YCL L++ F IHFFG++T GGND EIF R Sbjct: 175 AGKGLRFSRGGMISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPR 234 Query: 295 TVGHTVTSPNDTVQQCKSIFLSE 227 TVGH+V SP DTVQ+C+ IF E Sbjct: 235 TVGHSVVSPQDTVQRCREIFFPE 257
>PMM1_MOUSE (O35621) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1)| Length = 262 Score = 173 bits (438), Expect = 5e-43 Identities = 84/143 (58%), Positives = 104/143 (72%), Gaps = 2/143 (1%) Frame = -2 Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470 Y+A L +P KRGTFIEFR+GM+NVSPIGR+C+ EER +F + DK +R K V L+ +F Sbjct: 115 YMALLRLPKKRGTFIEFRNGMLNVSPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEF 174 Query: 469 AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDR 296 A L FS GG ISFDVFP+GWDK YCL L+E F IHFFG++T GGND EI+ R Sbjct: 175 AGKGLRFSRGGMISFDVFPEGWDKRYCLDSLDEDSFDIIHFFGNETSPGGNDFEIYADPR 234 Query: 295 TVGHTVTSPNDTVQQCKSIFLSE 227 TVGH+V SP DTVQ+C+ +F E Sbjct: 235 TVGHSVVSPQDTVQRCRELFFPE 257
>PMM_BABBO (O43976) Phosphomannomutase (EC 5.4.2.8)| Length = 246 Score = 144 bits (362), Expect = 3e-34 Identities = 69/139 (49%), Positives = 91/139 (65%), Gaps = 2/139 (1%) Frame = -2 Query: 649 YIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKF 470 YIADLDIP KRGTFIE R +IN+ P GRNCS +R F +YD +H+VR K++ VL+ +F Sbjct: 104 YIADLDIPTKRGTFIEHRKSLINICPPGRNCSMVDRRRFVEYDSIHHVRQKLIQVLKSQF 163 Query: 469 --AHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTYKGGNDHEIFESDR 296 L+F GGQIS DV+P+ W K+ L ++ + IHFFGD T +GGND EI+ Sbjct: 164 DSDDCPLSFVAGGQISIDVYPKAWSKSIALSHIGKCDVIHFFGDNTREGGNDFEIYNHPD 223 Query: 295 TVGHTVTSPNDTVQQCKSI 239 +GHTVT D V Q + + Sbjct: 224 VIGHTVTGYKDLVNQLEEL 242
>Y33B_DROME (Q9U1M2) Hypothetical protein CG32795 in chromosome 1| Length = 387 Score = 35.0 bits (79), Expect = 0.20 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = -2 Query: 631 IPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNV 506 +P K G +++ G +NVS + RN +DD+EK+ + NV Sbjct: 95 LPAKSGRYLQIILGDVNVSILNRNDKVRYKDDYEKFKLILNV 136
>XE7_HUMAN (Q02040) B-lymphocyte antigen precursor (B-lymphocyte surface| antigen) (721P) (Protein XE7) Length = 695 Score = 33.1 bits (74), Expect = 0.74 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -2 Query: 535 FEKYDKVHNVRPKMVSVLREKFAHLNL-TFSIGGQISFDVFPQ 410 FEK+ ++ NV M+ RE+ N TFS GG ++F+ + Q Sbjct: 178 FEKFGEIRNVDIPMLDPYREEMTGRNFHTFSFGGHLNFEAYVQ 220
>WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY DNA-binding| protein 19) Length = 1895 Score = 32.3 bits (72), Expect = 1.3 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Frame = -2 Query: 532 EKYDKVHNVRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLE----EFK 365 EK D ++ K + K HL T ++ G IS + FP + CLR+L+ + K Sbjct: 1375 EKLDLENSRHLKNLPTSIYKLKHLE-TLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIK 1433 Query: 364 EIHFFGDKTYKGGNDHEIFESDRTVGHTVTSPN 266 E+ +Y D +F R VT+PN Sbjct: 1434 ELP--SSISYLTALDELLFVDSRRNSPVVTNPN 1464
>EA31_LAMBD (P03753) Protein ea31| Length = 296 Score = 32.3 bits (72), Expect = 1.3 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Frame = -2 Query: 604 EFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVS---VLREKFAHLNLTFSIGGQ 434 EF IN+ P R+C+ E+ D+VH + RE++ + N G Sbjct: 131 EFSVMPINLVPSCRDCNMGEKGQVFAVDEVHQAIHPYIDKDIFFREQWVYANFVSGTPGA 190 Query: 433 ISFDV-FPQGWDKTYCLRYLEEFK 365 ISF V P W + R L FK Sbjct: 191 ISFYVECPANWRQEDKHRALHHFK 214
>YT72_CAEEL (Q11086) Hypothetical protein C01C10.2| Length = 204 Score = 29.6 bits (65), Expect = 8.2 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 26/109 (23%) Frame = -2 Query: 463 LNLTFSIGGQISFDVFPQ--------GWDKT------YCLRYLEEFKEIHFFGDKTY--- 335 LNLTFS +IS DVF Q W + Y + Y+++ E+ F D + Sbjct: 13 LNLTFSPKSEISEDVFKQMFSSLDRLWWSRLVISIRGYVINYVQQNDEVLFSCDDAFIKI 72 Query: 334 ------KGGNDHEIFESDRTVGHTVTSPNDTVQQC---KSIFLSE*SPD 215 + + FE + H + N +Q KSI ++ SP+ Sbjct: 73 HQKLAERNSQFEDAFEYLTAIFHVIREKNTLIQMISNPKSISTTKISPN 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,372,734 Number of Sequences: 219361 Number of extensions: 2277338 Number of successful extensions: 5918 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5651 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5907 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)