ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14d18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_193869.1| Oryza sativa (japonica cultivar-group), predic... 147 6e-32
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 147 6e-32
3dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic D... 147 6e-32
4dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic D... 147 6e-32
5dbj|AK102596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 6e-32
6gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome... 100 1e-17
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 100 1e-17
9gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome... 92 3e-15
10dbj|AK121330.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.63
11gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 ma... 40 9.8
12gb|AC135016.3| Mus musculus BAC clone RP24-244B4 from chromosome... 40 9.8
13gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosom... 40 9.8
14emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in l... 40 9.8
15ref|XM_726170.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 9.8
16emb|AL359837.21| Human DNA sequence from clone RP11-435P24 on ch... 40 9.8
17emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chr... 40 9.8
18gb|AC131572.4| Homo sapiens chromosome 11, clone RP11-496I9, com... 40 9.8
19emb|AL133405.17| Human DNA sequence from clone RP1-294H2 on chro... 40 9.8
20ref|XM_794605.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 9.8
21emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in l... 40 9.8
22gb|AC105756.5| Homo sapiens BAC clone RP11-78A21 from 4, complet... 40 9.8
23emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on ch... 40 9.8
24gb|AY110455.1| Zea mays CL33183_1 mRNA sequence 40 9.8
25gb|AC093350.15| Mus musculus chromosome 3, clone RP23-16G3, comp... 40 9.8
26emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chr... 40 9.8
27emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in... 40 9.8
28emb|AL807822.7| Mouse DNA sequence from clone RP23-31A20 on chro... 40 9.8

>ref|NM_193869.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3024

 Score =  147 bits (74), Expect = 6e-32
 Identities = 272/338 (80%)
 Strand = Plus / Minus

                                                                        
Query: 286  cggaccaggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtg 345
            |||| |||||||| ||||||||||||||||||||| |||||||| |||||||  ||  ||
Sbjct: 3011 cggaacaggaaagtatcaggaacagaagctggatccagctcataaaagccacagagtttg 2952

                                                                        
Query: 346  tcacctttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctca 405
             |||| ||||||| |||||| ||| ||||||||||  |||| |||||||| | ||| |||
Sbjct: 2951 ccaccgttttcttttgtcagccggaaagaaggtatcaggtgagaaaaccttatgttttca 2892

                                                                        
Query: 406  tttgcaggaatctccagaatacccctttctttgtcaaacctgaacacagctgtgtaaccg 465
            |||| ||| ||||||||| | |||||| |  |||||  | ||||||||||| |||| || 
Sbjct: 2891 tttgtaggtatctccagagtgccccttacactgtcaggcttgaacacagctctgtagcca 2832

                                                                        
Query: 466  tctactggagtcagaaacgagaactttgtgctagcttcagtccgctcagtaatctcaccg 525
            |||||| | |||| ||   |||  ||||||||||||||||| |  |||||||| ||||| 
Sbjct: 2831 tctactcgggtcaaaagtaagacttttgtgctagcttcagtgcagtcagtaatttcacca 2772

                                                                        
Query: 526  atggcatattcacacgcatcatcgctggaaggaacccagtcgggtgcccagttgttgtaa 585
            || |  || ||  | | ||| | |||||||||||||||  | |||||||| || ||||| 
Sbjct: 2771 attgtgtactcgaaagtatccttgctggaaggaacccaaccaggtgcccaattattgtag 2712

                                                  
Query: 586  atggcccaaatttcacctactcgcgggtaaatttcaaa 623
            |||||||||||||| |||||| | || | |||||||||
Sbjct: 2711 atggcccaaatttcccctacttgtggatgaatttcaaa 2674



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                        
Query: 636  aacttggctggtttctactaaatgagagaatgcgtcatttgaatcatacttgatcctnca 695
            ||||||||| |||||||||||||||||||| || ||||| |  ||  |||| ||||| ||
Sbjct: 2658 aacttggctagtttctactaaatgagagaaagcatcattcgtgtctaactttatcctcca 2599

                           
Query: 696  gttgcggatcttaaa 710
            ||||||||| |||||
Sbjct: 2598 gttgcggattttaaa 2584



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  147 bits (74), Expect = 6e-32
 Identities = 272/338 (80%)
 Strand = Plus / Plus

                                                                            
Query: 286      cggaccaggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtg 345
                |||| |||||||| ||||||||||||||||||||| |||||||| |||||||  ||  ||
Sbjct: 15456681 cggaacaggaaagtatcaggaacagaagctggatccagctcataaaagccacagagtttg 15456740

                                                                            
Query: 346      tcacctttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctca 405
                 |||| ||||||| |||||| ||| ||||||||||  |||| |||||||| | ||| |||
Sbjct: 15456741 ccaccgttttcttttgtcagccggaaagaaggtatcaggtgagaaaaccttatgttttca 15456800

                                                                            
Query: 406      tttgcaggaatctccagaatacccctttctttgtcaaacctgaacacagctgtgtaaccg 465
                |||| ||| ||||||||| | |||||| |  |||||  | ||||||||||| |||| || 
Sbjct: 15456801 tttgtaggtatctccagagtgccccttacactgtcaggcttgaacacagctctgtagcca 15456860

                                                                            
Query: 466      tctactggagtcagaaacgagaactttgtgctagcttcagtccgctcagtaatctcaccg 525
                |||||| | |||| ||   |||  ||||||||||||||||| |  |||||||| ||||| 
Sbjct: 15456861 tctactcgggtcaaaagtaagacttttgtgctagcttcagtgcagtcagtaatttcacca 15456920

                                                                            
Query: 526      atggcatattcacacgcatcatcgctggaaggaacccagtcgggtgcccagttgttgtaa 585
                || |  || ||  | | ||| | |||||||||||||||  | |||||||| || ||||| 
Sbjct: 15456921 attgtgtactcgaaagtatccttgctggaaggaacccaaccaggtgcccaattattgtag 15456980

                                                      
Query: 586      atggcccaaatttcacctactcgcgggtaaatttcaaa 623
                |||||||||||||| |||||| | || | |||||||||
Sbjct: 15456981 atggcccaaatttcccctacttgtggatgaatttcaaa 15457018



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                            
Query: 636      aacttggctggtttctactaaatgagagaatgcgtcatttgaatcatacttgatcctnca 695
                ||||||||| |||||||||||||||||||| || ||||| |  ||  |||| ||||| ||
Sbjct: 15457034 aacttggctagtttctactaaatgagagaaagcatcattcgtgtctaactttatcctcca 15457093

                               
Query: 696      gttgcggatcttaaa 710
                ||||||||| |||||
Sbjct: 15457094 gttgcggattttaaa 15457108



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>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1111C09
          Length = 156393

 Score =  147 bits (74), Expect = 6e-32
 Identities = 272/338 (80%)
 Strand = Plus / Plus

                                                                         
Query: 286   cggaccaggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtg 345
             |||| |||||||| ||||||||||||||||||||| |||||||| |||||||  ||  ||
Sbjct: 14190 cggaacaggaaagtatcaggaacagaagctggatccagctcataaaagccacagagtttg 14249

                                                                         
Query: 346   tcacctttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctca 405
              |||| ||||||| |||||| ||| ||||||||||  |||| |||||||| | ||| |||
Sbjct: 14250 ccaccgttttcttttgtcagccggaaagaaggtatcaggtgagaaaaccttatgttttca 14309

                                                                         
Query: 406   tttgcaggaatctccagaatacccctttctttgtcaaacctgaacacagctgtgtaaccg 465
             |||| ||| ||||||||| | |||||| |  |||||  | ||||||||||| |||| || 
Sbjct: 14310 tttgtaggtatctccagagtgccccttacactgtcaggcttgaacacagctctgtagcca 14369

                                                                         
Query: 466   tctactggagtcagaaacgagaactttgtgctagcttcagtccgctcagtaatctcaccg 525
             |||||| | |||| ||   |||  ||||||||||||||||| |  |||||||| ||||| 
Sbjct: 14370 tctactcgggtcaaaagtaagacttttgtgctagcttcagtgcagtcagtaatttcacca 14429

                                                                         
Query: 526   atggcatattcacacgcatcatcgctggaaggaacccagtcgggtgcccagttgttgtaa 585
             || |  || ||  | | ||| | |||||||||||||||  | |||||||| || ||||| 
Sbjct: 14430 attgtgtactcgaaagtatccttgctggaaggaacccaaccaggtgcccaattattgtag 14489

                                                   
Query: 586   atggcccaaatttcacctactcgcgggtaaatttcaaa 623
             |||||||||||||| |||||| | || | |||||||||
Sbjct: 14490 atggcccaaatttcccctacttgtggatgaatttcaaa 14527



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                         
Query: 636   aacttggctggtttctactaaatgagagaatgcgtcatttgaatcatacttgatcctnca 695
             ||||||||| |||||||||||||||||||| || ||||| |  ||  |||| ||||| ||
Sbjct: 14543 aacttggctagtttctactaaatgagagaaagcatcattcgtgtctaactttatcctcca 14602

                            
Query: 696   gttgcggatcttaaa 710
             ||||||||| |||||
Sbjct: 14603 gttgcggattttaaa 14617



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>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1045D11
          Length = 142320

 Score =  147 bits (74), Expect = 6e-32
 Identities = 272/338 (80%)
 Strand = Plus / Plus

                                                                          
Query: 286    cggaccaggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtg 345
              |||| |||||||| ||||||||||||||||||||| |||||||| |||||||  ||  ||
Sbjct: 134222 cggaacaggaaagtatcaggaacagaagctggatccagctcataaaagccacagagtttg 134281

                                                                          
Query: 346    tcacctttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctca 405
               |||| ||||||| |||||| ||| ||||||||||  |||| |||||||| | ||| |||
Sbjct: 134282 ccaccgttttcttttgtcagccggaaagaaggtatcaggtgagaaaaccttatgttttca 134341

                                                                          
Query: 406    tttgcaggaatctccagaatacccctttctttgtcaaacctgaacacagctgtgtaaccg 465
              |||| ||| ||||||||| | |||||| |  |||||  | ||||||||||| |||| || 
Sbjct: 134342 tttgtaggtatctccagagtgccccttacactgtcaggcttgaacacagctctgtagcca 134401

                                                                          
Query: 466    tctactggagtcagaaacgagaactttgtgctagcttcagtccgctcagtaatctcaccg 525
              |||||| | |||| ||   |||  ||||||||||||||||| |  |||||||| ||||| 
Sbjct: 134402 tctactcgggtcaaaagtaagacttttgtgctagcttcagtgcagtcagtaatttcacca 134461

                                                                          
Query: 526    atggcatattcacacgcatcatcgctggaaggaacccagtcgggtgcccagttgttgtaa 585
              || |  || ||  | | ||| | |||||||||||||||  | |||||||| || ||||| 
Sbjct: 134462 attgtgtactcgaaagtatccttgctggaaggaacccaaccaggtgcccaattattgtag 134521

                                                    
Query: 586    atggcccaaatttcacctactcgcgggtaaatttcaaa 623
              |||||||||||||| |||||| | || | |||||||||
Sbjct: 134522 atggcccaaatttcccctacttgtggatgaatttcaaa 134559



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                          
Query: 636    aacttggctggtttctactaaatgagagaatgcgtcatttgaatcatacttgatcctnca 695
              ||||||||| |||||||||||||||||||| || ||||| |  ||  |||| ||||| ||
Sbjct: 134575 aacttggctagtttctactaaatgagagaaagcatcattcgtgtctaactttatcctcca 134634

                             
Query: 696    gttgcggatcttaaa 710
              ||||||||| |||||
Sbjct: 134635 gttgcggattttaaa 134649



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>dbj|AK102596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098J19, full
            insert sequence
          Length = 3859

 Score =  147 bits (74), Expect = 6e-32
 Identities = 272/338 (80%)
 Strand = Plus / Minus

                                                                        
Query: 286  cggaccaggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtg 345
            |||| |||||||| ||||||||||||||||||||| |||||||| |||||||  ||  ||
Sbjct: 3441 cggaacaggaaagtatcaggaacagaagctggatccagctcataaaagccacagagtttg 3382

                                                                        
Query: 346  tcacctttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctca 405
             |||| ||||||| |||||| ||| ||||||||||  |||| |||||||| | ||| |||
Sbjct: 3381 ccaccgttttcttttgtcagccggaaagaaggtatcaggtgagaaaaccttatgttttca 3322

                                                                        
Query: 406  tttgcaggaatctccagaatacccctttctttgtcaaacctgaacacagctgtgtaaccg 465
            |||| ||| ||||||||| | |||||| |  |||||  | ||||||||||| |||| || 
Sbjct: 3321 tttgtaggtatctccagagtgccccttacactgtcaggcttgaacacagctctgtagcca 3262

                                                                        
Query: 466  tctactggagtcagaaacgagaactttgtgctagcttcagtccgctcagtaatctcaccg 525
            |||||| | |||| ||   |||  ||||||||||||||||| |  |||||||| ||||| 
Sbjct: 3261 tctactcgggtcaaaagtaagacttttgtgctagcttcagtgcagtcagtaatttcacca 3202

                                                                        
Query: 526  atggcatattcacacgcatcatcgctggaaggaacccagtcgggtgcccagttgttgtaa 585
            || |  || ||  | | ||| | |||||||||||||||  | |||||||| || ||||| 
Sbjct: 3201 attgtgtactcgaaagtatccttgctggaaggaacccaaccaggtgcccaattattgtag 3142

                                                  
Query: 586  atggcccaaatttcacctactcgcgggtaaatttcaaa 623
            |||||||||||||| |||||| | || | |||||||||
Sbjct: 3141 atggcccaaatttcccctacttgtggatgaatttcaaa 3104



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                        
Query: 636  aacttggctggtttctactaaatgagagaatgcgtcatttgaatcatacttgatcctnca 695
            ||||||||| |||||||||||||||||||| || ||||| |  ||  |||| ||||| ||
Sbjct: 3088 aacttggctagtttctactaaatgagagaaagcatcattcgtgtctaactttatcctcca 3029

                           
Query: 696  gttgcggatcttaaa 710
            ||||||||| |||||
Sbjct: 3028 gttgcggattttaaa 3014



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>gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0549G05, complete sequence
          Length = 147182

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                         
Query: 291   caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350
             ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| || ||||
Sbjct: 88538 caggaaaacatcaggaacagaagctggatcgagctcatagaagccacggagcctgccacc 88479

                           
Query: 351   tttttcttctgtca 364
             | ||||||||||||
Sbjct: 88478 tctttcttctgtca 88465



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                         
Query: 292   aggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacct 351
             |||||| | ||||||||||| |||||||| ||||||||||||||||| ||| || |||||
Sbjct: 76821 aggaaaacgtcaggaacagaggctggatcaagctcatagaagccacggagcttgccacct 76762

                                                            
Query: 352   ttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaa 398
              ||||||||||||||||| | || ||||| || || |||||| ||||
Sbjct: 76761 ctttcttctgtcagacggaaggatggtatttgatgagaaaacttcaa 76715



 Score = 44.1 bits (22), Expect = 0.63
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                          
Query: 299    catcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacctttttctt 358
              |||||||||||| |||||| || ||||||||| || || | ||| |  ||||||| ||||
Sbjct: 110761 catcaggaacagcagctgggtcgagctcatagcagtcatggagctttccacctttctctt 110702

                                                                          
Query: 359    ctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctcatttgcaggaatct 418
               ||| ||||   | || |||||  | || |||||||||| |||||| ||  |||||||||
Sbjct: 110701 ttgtgagacaaaacgatggtattcgatgagaaaacctcaggttctctttcacaggaatct 110642

                            
Query: 419    ccagaatacccctt 432
               |||||| ||||||
Sbjct: 110641 tcagaattcccctt 110628



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                            
Query: 291      caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350
                ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| || ||||
Sbjct: 20966926 caggaaaacatcaggaacagaagctggatcgagctcatagaagccacggagcctgccacc 20966867

                              
Query: 351      tttttcttctgtca 364
                | ||||||||||||
Sbjct: 20966866 tctttcttctgtca 20966853



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                            
Query: 292      aggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacct 351
                |||||| | ||||||||||| |||||||| ||||||||||||||||| ||| || |||||
Sbjct: 20955209 aggaaaacgtcaggaacagaggctggatcaagctcatagaagccacggagcttgccacct 20955150

                                                               
Query: 352      ttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaa 398
                 ||||||||||||||||| | || ||||| || || |||||| ||||
Sbjct: 20955149 ctttcttctgtcagacggaaggatggtatttgatgagaaaacttcaa 20955103



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                            
Query: 291      caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350
                ||||||| | |||||||||||||||||||| ||||||||||||||||| ||| || ||||
Sbjct: 20712273 caggaaaacgtcaggaacagaagctggatcgagctcatagaagccacggagcttgccacc 20712332

                              
Query: 351      tttttcttctgtca 364
                | ||||||||||||
Sbjct: 20712333 tctttcttctgtca 20712346



 Score = 44.1 bits (22), Expect = 0.63
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                            
Query: 299      catcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacctttttctt 358
                |||||||||||| |||||| || ||||||||| || || | ||| |  ||||||| ||||
Sbjct: 20989149 catcaggaacagcagctgggtcgagctcatagcagtcatggagctttccacctttctctt 20989090

                                                                            
Query: 359      ctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctcatttgcaggaatct 418
                 ||| ||||   | || |||||  | || |||||||||| |||||| ||  |||||||||
Sbjct: 20989089 ttgtgagacaaaacgatggtattcgatgagaaaacctcaggttctctttcacaggaatct 20989030

                              
Query: 419      ccagaatacccctt 432
                 |||||| ||||||
Sbjct: 20989029 tcagaattcccctt 20989016



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                            
Query: 291      caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350
                ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| || ||||
Sbjct: 21277161 caggaaaacatcaggaacagaagctggatcgagctcatagaagccacggagcctgccacc 21277102

                              
Query: 351      tttttcttctgtca 364
                | ||||||||||||
Sbjct: 21277101 tctttcttctgtca 21277088



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                            
Query: 292      aggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacct 351
                |||||| | ||||||||||| |||||||| ||||||||||||||||| ||| || |||||
Sbjct: 21265444 aggaaaacgtcaggaacagaggctggatcaagctcatagaagccacggagcttgccacct 21265385

                                                               
Query: 352      ttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaa 398
                 ||||||||||||||||| | || ||||| || || |||||| ||||
Sbjct: 21265384 ctttcttctgtcagacggaaggatggtatttgatgagaaaacttcaa 21265338



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                            
Query: 291      caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350
                ||||||| | |||||||||||||||||||| ||||||||||||||||| ||| || ||||
Sbjct: 21022508 caggaaaacgtcaggaacagaagctggatcgagctcatagaagccacggagcttgccacc 21022567

                              
Query: 351      tttttcttctgtca 364
                | ||||||||||||
Sbjct: 21022568 tctttcttctgtca 21022581



 Score = 44.1 bits (22), Expect = 0.63
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                            
Query: 299      catcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacctttttctt 358
                |||||||||||| |||||| || ||||||||| || || | ||| |  ||||||| ||||
Sbjct: 21299384 catcaggaacagcagctgggtcgagctcatagcagtcatggagctttccacctttctctt 21299325

                                                                            
Query: 359      ctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctcatttgcaggaatct 418
                 ||| ||||   | || |||||  | || |||||||||| |||||| ||  |||||||||
Sbjct: 21299324 ttgtgagacaaaacgatggtattcgatgagaaaacctcaggttctctttcacaggaatct 21299265

                              
Query: 419      ccagaatacccctt 432
                 |||||| ||||||
Sbjct: 21299264 tcagaattcccctt 21299251



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>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0093J03, complete sequence
          Length = 200626

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                         
Query: 291   caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350
             ||||||| | |||||||||||||||||||| ||||||||||||||||| ||| || ||||
Sbjct: 19334 caggaaaacgtcaggaacagaagctggatcgagctcatagaagccacggagcttgccacc 19393

                           
Query: 351   tttttcttctgtca 364
             | ||||||||||||
Sbjct: 19394 tctttcttctgtca 19407



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>dbj|AK121330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118F05, full
            insert sequence
          Length = 3759

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                        
Query: 299  catcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacctttttctt 358
            |||||||||||| |||||| || ||||||||| || || | ||| |  ||||||| ||||
Sbjct: 3397 catcaggaacagcagctgggtcgagctcatagcagtcatggagctttccacctttctctt 3338

                                                                        
Query: 359  ctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctcatttgcaggaatct 418
             ||| ||||   | || |||||  | || |||||||||| |||||| ||  |||||||||
Sbjct: 3337 ttgtgagacaaaacgatggtattcgatgagaaaacctcaggttctctttcacaggaatct 3278

                          
Query: 419  ccagaatacccctt 432
             |||||| ||||||
Sbjct: 3277 tcagaattcccctt 3264



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>gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 map 3, complete sequence
          Length = 191014

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    caggaaagcatcaggaacag 310
              ||||||||||||||||||||
Sbjct: 138665 caggaaagcatcaggaacag 138646



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>gb|AC135016.3| Mus musculus BAC clone RP24-244B4 from chromosome 18, complete sequence
          Length = 177193

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    cattttcatagtgattgata 193
              ||||||||||||||||||||
Sbjct: 157764 cattttcatagtgattgata 157783



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>gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosome 3, complete sequence
          Length = 210014

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    caggaaagcatcaggaacag 310
              ||||||||||||||||||||
Sbjct: 167032 caggaaagcatcaggaacag 167013



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>emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in linkage group 3,
             complete sequence
          Length = 168285

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   tgcagataacattttcatag 184
             ||||||||||||||||||||
Sbjct: 26411 tgcagataacattttcatag 26430



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>ref|XM_726170.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03268)
            partial mRNA
          Length = 2193

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 229  ttgattggaagtaattcaat 248
            ||||||||||||||||||||
Sbjct: 1444 ttgattggaagtaattcaat 1463



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>emb|AL359837.21| Human DNA sequence from clone RP11-435P24 on chromosome 1 Contains the
             FMOD gene for fibromodulin, a small EDRK-rich factor 2
             (SERF2) pseudogene and a CpG island, complete sequence
          Length = 128757

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   caggaaagcatcaggaacag 310
             ||||||||||||||||||||
Sbjct: 15590 caggaaagcatcaggaacag 15571



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>emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chromosome 10, complete
              sequence
          Length = 203169

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    taaaacatctagaaatacag 136
              ||||||||||||||||||||
Sbjct: 195765 taaaacatctagaaatacag 195784



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>gb|AC131572.4| Homo sapiens chromosome 11, clone RP11-496I9, complete sequence
          Length = 162145

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 555   aggaacccagtcgggtgccc 574
             ||||||||||||||||||||
Sbjct: 87681 aggaacccagtcgggtgccc 87662



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>emb|AL133405.17| Human DNA sequence from clone RP1-294H2 on chromosome 6 Contains a CpG
             island, complete sequence
          Length = 151068

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   aggaacccagtcgggtgccc 574
             ||||||||||||||||||||
Sbjct: 54014 aggaacccagtcgggtgccc 54033



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>ref|XM_794605.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC574952 (LOC574952), mRNA
          Length = 970

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ttggaagtaattcaatgtca 252
           ||||||||||||||||||||
Sbjct: 591 ttggaagtaattcaatgtca 572



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>emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in linkage group 12
             Contains part of a novel ring finger gene, a novel zinc
             finger pseudogene, a novel zinc finger gene and a novel
             gene similar to valop (vertebrate ancient long opsin),
             complete sequence
          Length = 165151

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    tccacaacagaaatggccaaaata 94
             ||||| ||||||||||||||||||
Sbjct: 62925 tccaccacagaaatggccaaaata 62948



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>gb|AC105756.5| Homo sapiens BAC clone RP11-78A21 from 4, complete sequence
          Length = 156394

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ccaactagctttctaaggtc 49
             ||||||||||||||||||||
Sbjct: 66277 ccaactagctttctaaggtc 66296



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>emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on chromosome 2, complete
             sequence
          Length = 132427

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    gctttcataaggtccacaac 78
             ||||||||||||||||||||
Sbjct: 28037 gctttcataaggtccacaac 28018



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>gb|AY110455.1| Zea mays CL33183_1 mRNA sequence
          Length = 668

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 493 gtgctagcttcagtccgctcagtaatctcaccgatggcatattc 536
           |||||||||||| | |||||||  ||||| || |||||||||||
Sbjct: 578 gtgctagcttcattgcgctcaggtatctcgccaatggcatattc 621



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>gb|AC093350.15| Mus musculus chromosome 3, clone RP23-16G3, complete sequence
          Length = 200326

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 129    aaatacagagagcctaactgagaa 152
              |||||||||||| |||||||||||
Sbjct: 118021 aaatacagagagtctaactgagaa 118044



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>emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chromosome 2, complete
             sequence
          Length = 208765

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   ttcaatgtcagcttccaagt 262
             ||||||||||||||||||||
Sbjct: 38479 ttcaatgtcagcttccaagt 38460



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>emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in linkage group 14,
             complete sequence
          Length = 122704

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    tccacaacagaaatggccaaaata 94
             ||||| ||||||||||||||||||
Sbjct: 92538 tccaccacagaaatggccaaaata 92561



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>emb|AL807822.7| Mouse DNA sequence from clone RP23-31A20 on chromosome X, complete
             sequence
          Length = 116719

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 472   ggagtcagaaacgagaactt 491
             ||||||||||||||||||||
Sbjct: 31792 ggagtcagaaacgagaactt 31811


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,949,151
Number of Sequences: 3902068
Number of extensions: 5949151
Number of successful extensions: 128145
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127946
Number of HSP's gapped (non-prelim): 189
length of query: 714
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 691
effective length of database: 17,143,297,704
effective search space: 11846018713464
effective search space used: 11846018713464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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