Clone Name | rbasd14d18 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_193869.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3024 Score = 147 bits (74), Expect = 6e-32 Identities = 272/338 (80%) Strand = Plus / Minus Query: 286 cggaccaggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtg 345 |||| |||||||| ||||||||||||||||||||| |||||||| ||||||| || || Sbjct: 3011 cggaacaggaaagtatcaggaacagaagctggatccagctcataaaagccacagagtttg 2952 Query: 346 tcacctttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctca 405 |||| ||||||| |||||| ||| |||||||||| |||| |||||||| | ||| ||| Sbjct: 2951 ccaccgttttcttttgtcagccggaaagaaggtatcaggtgagaaaaccttatgttttca 2892 Query: 406 tttgcaggaatctccagaatacccctttctttgtcaaacctgaacacagctgtgtaaccg 465 |||| ||| ||||||||| | |||||| | ||||| | ||||||||||| |||| || Sbjct: 2891 tttgtaggtatctccagagtgccccttacactgtcaggcttgaacacagctctgtagcca 2832 Query: 466 tctactggagtcagaaacgagaactttgtgctagcttcagtccgctcagtaatctcaccg 525 |||||| | |||| || ||| ||||||||||||||||| | |||||||| ||||| Sbjct: 2831 tctactcgggtcaaaagtaagacttttgtgctagcttcagtgcagtcagtaatttcacca 2772 Query: 526 atggcatattcacacgcatcatcgctggaaggaacccagtcgggtgcccagttgttgtaa 585 || | || || | | ||| | ||||||||||||||| | |||||||| || ||||| Sbjct: 2771 attgtgtactcgaaagtatccttgctggaaggaacccaaccaggtgcccaattattgtag 2712 Query: 586 atggcccaaatttcacctactcgcgggtaaatttcaaa 623 |||||||||||||| |||||| | || | ||||||||| Sbjct: 2711 atggcccaaatttcccctacttgtggatgaatttcaaa 2674 Score = 63.9 bits (32), Expect = 7e-07 Identities = 64/75 (85%) Strand = Plus / Minus Query: 636 aacttggctggtttctactaaatgagagaatgcgtcatttgaatcatacttgatcctnca 695 ||||||||| |||||||||||||||||||| || ||||| | || |||| ||||| || Sbjct: 2658 aacttggctagtttctactaaatgagagaaagcatcattcgtgtctaactttatcctcca 2599 Query: 696 gttgcggatcttaaa 710 ||||||||| ||||| Sbjct: 2598 gttgcggattttaaa 2584
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 147 bits (74), Expect = 6e-32 Identities = 272/338 (80%) Strand = Plus / Plus Query: 286 cggaccaggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtg 345 |||| |||||||| ||||||||||||||||||||| |||||||| ||||||| || || Sbjct: 15456681 cggaacaggaaagtatcaggaacagaagctggatccagctcataaaagccacagagtttg 15456740 Query: 346 tcacctttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctca 405 |||| ||||||| |||||| ||| |||||||||| |||| |||||||| | ||| ||| Sbjct: 15456741 ccaccgttttcttttgtcagccggaaagaaggtatcaggtgagaaaaccttatgttttca 15456800 Query: 406 tttgcaggaatctccagaatacccctttctttgtcaaacctgaacacagctgtgtaaccg 465 |||| ||| ||||||||| | |||||| | ||||| | ||||||||||| |||| || Sbjct: 15456801 tttgtaggtatctccagagtgccccttacactgtcaggcttgaacacagctctgtagcca 15456860 Query: 466 tctactggagtcagaaacgagaactttgtgctagcttcagtccgctcagtaatctcaccg 525 |||||| | |||| || ||| ||||||||||||||||| | |||||||| ||||| Sbjct: 15456861 tctactcgggtcaaaagtaagacttttgtgctagcttcagtgcagtcagtaatttcacca 15456920 Query: 526 atggcatattcacacgcatcatcgctggaaggaacccagtcgggtgcccagttgttgtaa 585 || | || || | | ||| | ||||||||||||||| | |||||||| || ||||| Sbjct: 15456921 attgtgtactcgaaagtatccttgctggaaggaacccaaccaggtgcccaattattgtag 15456980 Query: 586 atggcccaaatttcacctactcgcgggtaaatttcaaa 623 |||||||||||||| |||||| | || | ||||||||| Sbjct: 15456981 atggcccaaatttcccctacttgtggatgaatttcaaa 15457018 Score = 63.9 bits (32), Expect = 7e-07 Identities = 64/75 (85%) Strand = Plus / Plus Query: 636 aacttggctggtttctactaaatgagagaatgcgtcatttgaatcatacttgatcctnca 695 ||||||||| |||||||||||||||||||| || ||||| | || |||| ||||| || Sbjct: 15457034 aacttggctagtttctactaaatgagagaaagcatcattcgtgtctaactttatcctcca 15457093 Query: 696 gttgcggatcttaaa 710 ||||||||| ||||| Sbjct: 15457094 gttgcggattttaaa 15457108
>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1111C09 Length = 156393 Score = 147 bits (74), Expect = 6e-32 Identities = 272/338 (80%) Strand = Plus / Plus Query: 286 cggaccaggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtg 345 |||| |||||||| ||||||||||||||||||||| |||||||| ||||||| || || Sbjct: 14190 cggaacaggaaagtatcaggaacagaagctggatccagctcataaaagccacagagtttg 14249 Query: 346 tcacctttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctca 405 |||| ||||||| |||||| ||| |||||||||| |||| |||||||| | ||| ||| Sbjct: 14250 ccaccgttttcttttgtcagccggaaagaaggtatcaggtgagaaaaccttatgttttca 14309 Query: 406 tttgcaggaatctccagaatacccctttctttgtcaaacctgaacacagctgtgtaaccg 465 |||| ||| ||||||||| | |||||| | ||||| | ||||||||||| |||| || Sbjct: 14310 tttgtaggtatctccagagtgccccttacactgtcaggcttgaacacagctctgtagcca 14369 Query: 466 tctactggagtcagaaacgagaactttgtgctagcttcagtccgctcagtaatctcaccg 525 |||||| | |||| || ||| ||||||||||||||||| | |||||||| ||||| Sbjct: 14370 tctactcgggtcaaaagtaagacttttgtgctagcttcagtgcagtcagtaatttcacca 14429 Query: 526 atggcatattcacacgcatcatcgctggaaggaacccagtcgggtgcccagttgttgtaa 585 || | || || | | ||| | ||||||||||||||| | |||||||| || ||||| Sbjct: 14430 attgtgtactcgaaagtatccttgctggaaggaacccaaccaggtgcccaattattgtag 14489 Query: 586 atggcccaaatttcacctactcgcgggtaaatttcaaa 623 |||||||||||||| |||||| | || | ||||||||| Sbjct: 14490 atggcccaaatttcccctacttgtggatgaatttcaaa 14527 Score = 63.9 bits (32), Expect = 7e-07 Identities = 64/75 (85%) Strand = Plus / Plus Query: 636 aacttggctggtttctactaaatgagagaatgcgtcatttgaatcatacttgatcctnca 695 ||||||||| |||||||||||||||||||| || ||||| | || |||| ||||| || Sbjct: 14543 aacttggctagtttctactaaatgagagaaagcatcattcgtgtctaactttatcctcca 14602 Query: 696 gttgcggatcttaaa 710 ||||||||| ||||| Sbjct: 14603 gttgcggattttaaa 14617
>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1045D11 Length = 142320 Score = 147 bits (74), Expect = 6e-32 Identities = 272/338 (80%) Strand = Plus / Plus Query: 286 cggaccaggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtg 345 |||| |||||||| ||||||||||||||||||||| |||||||| ||||||| || || Sbjct: 134222 cggaacaggaaagtatcaggaacagaagctggatccagctcataaaagccacagagtttg 134281 Query: 346 tcacctttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctca 405 |||| ||||||| |||||| ||| |||||||||| |||| |||||||| | ||| ||| Sbjct: 134282 ccaccgttttcttttgtcagccggaaagaaggtatcaggtgagaaaaccttatgttttca 134341 Query: 406 tttgcaggaatctccagaatacccctttctttgtcaaacctgaacacagctgtgtaaccg 465 |||| ||| ||||||||| | |||||| | ||||| | ||||||||||| |||| || Sbjct: 134342 tttgtaggtatctccagagtgccccttacactgtcaggcttgaacacagctctgtagcca 134401 Query: 466 tctactggagtcagaaacgagaactttgtgctagcttcagtccgctcagtaatctcaccg 525 |||||| | |||| || ||| ||||||||||||||||| | |||||||| ||||| Sbjct: 134402 tctactcgggtcaaaagtaagacttttgtgctagcttcagtgcagtcagtaatttcacca 134461 Query: 526 atggcatattcacacgcatcatcgctggaaggaacccagtcgggtgcccagttgttgtaa 585 || | || || | | ||| | ||||||||||||||| | |||||||| || ||||| Sbjct: 134462 attgtgtactcgaaagtatccttgctggaaggaacccaaccaggtgcccaattattgtag 134521 Query: 586 atggcccaaatttcacctactcgcgggtaaatttcaaa 623 |||||||||||||| |||||| | || | ||||||||| Sbjct: 134522 atggcccaaatttcccctacttgtggatgaatttcaaa 134559 Score = 63.9 bits (32), Expect = 7e-07 Identities = 64/75 (85%) Strand = Plus / Plus Query: 636 aacttggctggtttctactaaatgagagaatgcgtcatttgaatcatacttgatcctnca 695 ||||||||| |||||||||||||||||||| || ||||| | || |||| ||||| || Sbjct: 134575 aacttggctagtttctactaaatgagagaaagcatcattcgtgtctaactttatcctcca 134634 Query: 696 gttgcggatcttaaa 710 ||||||||| ||||| Sbjct: 134635 gttgcggattttaaa 134649
>dbj|AK102596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098J19, full insert sequence Length = 3859 Score = 147 bits (74), Expect = 6e-32 Identities = 272/338 (80%) Strand = Plus / Minus Query: 286 cggaccaggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtg 345 |||| |||||||| ||||||||||||||||||||| |||||||| ||||||| || || Sbjct: 3441 cggaacaggaaagtatcaggaacagaagctggatccagctcataaaagccacagagtttg 3382 Query: 346 tcacctttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctca 405 |||| ||||||| |||||| ||| |||||||||| |||| |||||||| | ||| ||| Sbjct: 3381 ccaccgttttcttttgtcagccggaaagaaggtatcaggtgagaaaaccttatgttttca 3322 Query: 406 tttgcaggaatctccagaatacccctttctttgtcaaacctgaacacagctgtgtaaccg 465 |||| ||| ||||||||| | |||||| | ||||| | ||||||||||| |||| || Sbjct: 3321 tttgtaggtatctccagagtgccccttacactgtcaggcttgaacacagctctgtagcca 3262 Query: 466 tctactggagtcagaaacgagaactttgtgctagcttcagtccgctcagtaatctcaccg 525 |||||| | |||| || ||| ||||||||||||||||| | |||||||| ||||| Sbjct: 3261 tctactcgggtcaaaagtaagacttttgtgctagcttcagtgcagtcagtaatttcacca 3202 Query: 526 atggcatattcacacgcatcatcgctggaaggaacccagtcgggtgcccagttgttgtaa 585 || | || || | | ||| | ||||||||||||||| | |||||||| || ||||| Sbjct: 3201 attgtgtactcgaaagtatccttgctggaaggaacccaaccaggtgcccaattattgtag 3142 Query: 586 atggcccaaatttcacctactcgcgggtaaatttcaaa 623 |||||||||||||| |||||| | || | ||||||||| Sbjct: 3141 atggcccaaatttcccctacttgtggatgaatttcaaa 3104 Score = 63.9 bits (32), Expect = 7e-07 Identities = 64/75 (85%) Strand = Plus / Minus Query: 636 aacttggctggtttctactaaatgagagaatgcgtcatttgaatcatacttgatcctnca 695 ||||||||| |||||||||||||||||||| || ||||| | || |||| ||||| || Sbjct: 3088 aacttggctagtttctactaaatgagagaaagcatcattcgtgtctaactttatcctcca 3029 Query: 696 gttgcggatcttaaa 710 ||||||||| ||||| Sbjct: 3028 gttgcggattttaaa 3014
>gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0549G05, complete sequence Length = 147182 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 291 caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350 ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| || |||| Sbjct: 88538 caggaaaacatcaggaacagaagctggatcgagctcatagaagccacggagcctgccacc 88479 Query: 351 tttttcttctgtca 364 | |||||||||||| Sbjct: 88478 tctttcttctgtca 88465 Score = 93.7 bits (47), Expect = 8e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 292 aggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacct 351 |||||| | ||||||||||| |||||||| ||||||||||||||||| ||| || ||||| Sbjct: 76821 aggaaaacgtcaggaacagaggctggatcaagctcatagaagccacggagcttgccacct 76762 Query: 352 ttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaa 398 ||||||||||||||||| | || ||||| || || |||||| |||| Sbjct: 76761 ctttcttctgtcagacggaaggatggtatttgatgagaaaacttcaa 76715 Score = 44.1 bits (22), Expect = 0.63 Identities = 106/134 (79%) Strand = Plus / Minus Query: 299 catcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacctttttctt 358 |||||||||||| |||||| || ||||||||| || || | ||| | ||||||| |||| Sbjct: 110761 catcaggaacagcagctgggtcgagctcatagcagtcatggagctttccacctttctctt 110702 Query: 359 ctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctcatttgcaggaatct 418 ||| |||| | || ||||| | || |||||||||| |||||| || ||||||||| Sbjct: 110701 ttgtgagacaaaacgatggtattcgatgagaaaacctcaggttctctttcacaggaatct 110642 Query: 419 ccagaatacccctt 432 |||||| |||||| Sbjct: 110641 tcagaattcccctt 110628
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 291 caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350 ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| || |||| Sbjct: 20966926 caggaaaacatcaggaacagaagctggatcgagctcatagaagccacggagcctgccacc 20966867 Query: 351 tttttcttctgtca 364 | |||||||||||| Sbjct: 20966866 tctttcttctgtca 20966853 Score = 93.7 bits (47), Expect = 8e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 292 aggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacct 351 |||||| | ||||||||||| |||||||| ||||||||||||||||| ||| || ||||| Sbjct: 20955209 aggaaaacgtcaggaacagaggctggatcaagctcatagaagccacggagcttgccacct 20955150 Query: 352 ttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaa 398 ||||||||||||||||| | || ||||| || || |||||| |||| Sbjct: 20955149 ctttcttctgtcagacggaaggatggtatttgatgagaaaacttcaa 20955103 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Plus Query: 291 caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350 ||||||| | |||||||||||||||||||| ||||||||||||||||| ||| || |||| Sbjct: 20712273 caggaaaacgtcaggaacagaagctggatcgagctcatagaagccacggagcttgccacc 20712332 Query: 351 tttttcttctgtca 364 | |||||||||||| Sbjct: 20712333 tctttcttctgtca 20712346 Score = 44.1 bits (22), Expect = 0.63 Identities = 106/134 (79%) Strand = Plus / Minus Query: 299 catcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacctttttctt 358 |||||||||||| |||||| || ||||||||| || || | ||| | ||||||| |||| Sbjct: 20989149 catcaggaacagcagctgggtcgagctcatagcagtcatggagctttccacctttctctt 20989090 Query: 359 ctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctcatttgcaggaatct 418 ||| |||| | || ||||| | || |||||||||| |||||| || ||||||||| Sbjct: 20989089 ttgtgagacaaaacgatggtattcgatgagaaaacctcaggttctctttcacaggaatct 20989030 Query: 419 ccagaatacccctt 432 |||||| |||||| Sbjct: 20989029 tcagaattcccctt 20989016
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 291 caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350 ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| || |||| Sbjct: 21277161 caggaaaacatcaggaacagaagctggatcgagctcatagaagccacggagcctgccacc 21277102 Query: 351 tttttcttctgtca 364 | |||||||||||| Sbjct: 21277101 tctttcttctgtca 21277088 Score = 93.7 bits (47), Expect = 8e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 292 aggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacct 351 |||||| | ||||||||||| |||||||| ||||||||||||||||| ||| || ||||| Sbjct: 21265444 aggaaaacgtcaggaacagaggctggatcaagctcatagaagccacggagcttgccacct 21265385 Query: 352 ttttcttctgtcagacggtaagaaggtatatggtgcgaaaacctcaa 398 ||||||||||||||||| | || ||||| || || |||||| |||| Sbjct: 21265384 ctttcttctgtcagacggaaggatggtatttgatgagaaaacttcaa 21265338 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Plus Query: 291 caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350 ||||||| | |||||||||||||||||||| ||||||||||||||||| ||| || |||| Sbjct: 21022508 caggaaaacgtcaggaacagaagctggatcgagctcatagaagccacggagcttgccacc 21022567 Query: 351 tttttcttctgtca 364 | |||||||||||| Sbjct: 21022568 tctttcttctgtca 21022581 Score = 44.1 bits (22), Expect = 0.63 Identities = 106/134 (79%) Strand = Plus / Minus Query: 299 catcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacctttttctt 358 |||||||||||| |||||| || ||||||||| || || | ||| | ||||||| |||| Sbjct: 21299384 catcaggaacagcagctgggtcgagctcatagcagtcatggagctttccacctttctctt 21299325 Query: 359 ctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctcatttgcaggaatct 418 ||| |||| | || ||||| | || |||||||||| |||||| || ||||||||| Sbjct: 21299324 ttgtgagacaaaacgatggtattcgatgagaaaacctcaggttctctttcacaggaatct 21299265 Query: 419 ccagaatacccctt 432 |||||| |||||| Sbjct: 21299264 tcagaattcccctt 21299251
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Plus Query: 291 caggaaagcatcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacc 350 ||||||| | |||||||||||||||||||| ||||||||||||||||| ||| || |||| Sbjct: 19334 caggaaaacgtcaggaacagaagctggatcgagctcatagaagccacggagcttgccacc 19393 Query: 351 tttttcttctgtca 364 | |||||||||||| Sbjct: 19394 tctttcttctgtca 19407
>dbj|AK121330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118F05, full insert sequence Length = 3759 Score = 44.1 bits (22), Expect = 0.63 Identities = 106/134 (79%) Strand = Plus / Minus Query: 299 catcaggaacagaagctggatctagctcatagaagccacgaagcgtgtcacctttttctt 358 |||||||||||| |||||| || ||||||||| || || | ||| | ||||||| |||| Sbjct: 3397 catcaggaacagcagctgggtcgagctcatagcagtcatggagctttccacctttctctt 3338 Query: 359 ctgtcagacggtaagaaggtatatggtgcgaaaacctcaagttctcatttgcaggaatct 418 ||| |||| | || ||||| | || |||||||||| |||||| || ||||||||| Sbjct: 3337 ttgtgagacaaaacgatggtattcgatgagaaaacctcaggttctctttcacaggaatct 3278 Query: 419 ccagaatacccctt 432 |||||| |||||| Sbjct: 3277 tcagaattcccctt 3264
>gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 map 3, complete sequence Length = 191014 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 caggaaagcatcaggaacag 310 |||||||||||||||||||| Sbjct: 138665 caggaaagcatcaggaacag 138646
>gb|AC135016.3| Mus musculus BAC clone RP24-244B4 from chromosome 18, complete sequence Length = 177193 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 cattttcatagtgattgata 193 |||||||||||||||||||| Sbjct: 157764 cattttcatagtgattgata 157783
>gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosome 3, complete sequence Length = 210014 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 caggaaagcatcaggaacag 310 |||||||||||||||||||| Sbjct: 167032 caggaaagcatcaggaacag 167013
>emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in linkage group 3, complete sequence Length = 168285 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tgcagataacattttcatag 184 |||||||||||||||||||| Sbjct: 26411 tgcagataacattttcatag 26430
>ref|XM_726170.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03268) partial mRNA Length = 2193 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttgattggaagtaattcaat 248 |||||||||||||||||||| Sbjct: 1444 ttgattggaagtaattcaat 1463
>emb|AL359837.21| Human DNA sequence from clone RP11-435P24 on chromosome 1 Contains the FMOD gene for fibromodulin, a small EDRK-rich factor 2 (SERF2) pseudogene and a CpG island, complete sequence Length = 128757 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 caggaaagcatcaggaacag 310 |||||||||||||||||||| Sbjct: 15590 caggaaagcatcaggaacag 15571
>emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chromosome 10, complete sequence Length = 203169 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 taaaacatctagaaatacag 136 |||||||||||||||||||| Sbjct: 195765 taaaacatctagaaatacag 195784
>gb|AC131572.4| Homo sapiens chromosome 11, clone RP11-496I9, complete sequence Length = 162145 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 555 aggaacccagtcgggtgccc 574 |||||||||||||||||||| Sbjct: 87681 aggaacccagtcgggtgccc 87662
>emb|AL133405.17| Human DNA sequence from clone RP1-294H2 on chromosome 6 Contains a CpG island, complete sequence Length = 151068 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 555 aggaacccagtcgggtgccc 574 |||||||||||||||||||| Sbjct: 54014 aggaacccagtcgggtgccc 54033
>ref|XM_794605.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC574952 (LOC574952), mRNA Length = 970 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 ttggaagtaattcaatgtca 252 |||||||||||||||||||| Sbjct: 591 ttggaagtaattcaatgtca 572
>emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in linkage group 12 Contains part of a novel ring finger gene, a novel zinc finger pseudogene, a novel zinc finger gene and a novel gene similar to valop (vertebrate ancient long opsin), complete sequence Length = 165151 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 tccacaacagaaatggccaaaata 94 ||||| |||||||||||||||||| Sbjct: 62925 tccaccacagaaatggccaaaata 62948
>gb|AC105756.5| Homo sapiens BAC clone RP11-78A21 from 4, complete sequence Length = 156394 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 ccaactagctttctaaggtc 49 |||||||||||||||||||| Sbjct: 66277 ccaactagctttctaaggtc 66296
>emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on chromosome 2, complete sequence Length = 132427 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 gctttcataaggtccacaac 78 |||||||||||||||||||| Sbjct: 28037 gctttcataaggtccacaac 28018
>gb|AY110455.1| Zea mays CL33183_1 mRNA sequence Length = 668 Score = 40.1 bits (20), Expect = 9.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 493 gtgctagcttcagtccgctcagtaatctcaccgatggcatattc 536 |||||||||||| | ||||||| ||||| || ||||||||||| Sbjct: 578 gtgctagcttcattgcgctcaggtatctcgccaatggcatattc 621
>gb|AC093350.15| Mus musculus chromosome 3, clone RP23-16G3, complete sequence Length = 200326 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 aaatacagagagcctaactgagaa 152 |||||||||||| ||||||||||| Sbjct: 118021 aaatacagagagtctaactgagaa 118044
>emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chromosome 2, complete sequence Length = 208765 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 ttcaatgtcagcttccaagt 262 |||||||||||||||||||| Sbjct: 38479 ttcaatgtcagcttccaagt 38460
>emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in linkage group 14, complete sequence Length = 122704 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 tccacaacagaaatggccaaaata 94 ||||| |||||||||||||||||| Sbjct: 92538 tccaccacagaaatggccaaaata 92561
>emb|AL807822.7| Mouse DNA sequence from clone RP23-31A20 on chromosome X, complete sequence Length = 116719 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 ggagtcagaaacgagaactt 491 |||||||||||||||||||| Sbjct: 31792 ggagtcagaaacgagaactt 31811 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,949,151 Number of Sequences: 3902068 Number of extensions: 5949151 Number of successful extensions: 128145 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127946 Number of HSP's gapped (non-prelim): 189 length of query: 714 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 691 effective length of database: 17,143,297,704 effective search space: 11846018713464 effective search space used: 11846018713464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)