>PP1RA_XENLA (Q6GLQ4) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10
          Length = 819

 Score = 38.1 bits (87), Expect = 0.023
 Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -3

Query: 600 PSREGHRRPDQHLLHRAGGVRGGERHQLRHG--GDVVRRV*EHRGAHGG-AGPHLRRRGG 430
           P R+G+  P  +   R G   GGER  +R G  G        +RG  GG  G   R RGG
Sbjct: 684 PQRDGYWEPPPNENLRGGSHHGGERGGMRGGDRGPPPPPFHRNRGGRGGEPGYRGRGRGG 743

Query: 429 LHPHPGEQEPAAGADHG 379
              HPG   P  G  HG
Sbjct: 744 ERGHPGRNGP-YGMGHG 759

>DVL2_MOUSE (Q60838) Segment polarity protein dishevelled homolog DVL-2|
           (Dishevelled-2) (DSH homolog 2)
          Length = 736

 Score = 36.2 bits (82), Expect = 0.087
 Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
 Frame = -3

Query: 648 DQGRGNFPSQEERMDRPSREGHRRPDQHLLHRAGGVR-GGERHQLRHGGDVVRRV*EHRG 472
           D G G     EER   P  +     +  L  R G +R GGE      GG    R      
Sbjct: 598 DGGAGRTGRPEERA--PESKSGSGSESELSSRGGSLRRGGEPGGTGDGGPPPSR------ 649

Query: 471 AHGGAGPHLRRRGGLHPHPGEQEPAAGADHGILRPASQLLRRQVPAGRRGILGAVKPPCC 292
              GA P+LR   GLHP+        GA  G+  P + ++   +P     +  AV+PP  
Sbjct: 650 GSTGAPPNLRALPGLHPY--------GAPSGMALPYNPMMVVMMPPPPPPVSTAVQPPGA 701

Query: 291 GSARARG 271
              R  G
Sbjct: 702 PPVRDLG 708

>MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)|
          Length = 403

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 34/115 (29%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
 Frame = -3

Query: 552 AGGVRGGERHQLRHGGDVVRRV*EHRGAHGGAGPHLRRR----GGLHPHPGEQEPAAGAD 385
           AG   GG   ++     VV  V     A  GAGPH         G H HP    P A   
Sbjct: 146 AGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGS 205

Query: 384 HGILRPASQLLRRQVPAGRRGILGAVKPPCCGSARARGGAFRFTHLRGGI-FGDR 223
                  +       PA   G  G       G A   GGA    H  GG+ F DR
Sbjct: 206 AAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDR 260

>DVL2_HUMAN (O14641) Segment polarity protein dishevelled homolog DVL-2|
           (Dishevelled-2) (DSH homolog 2)
          Length = 736

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 1/127 (0%)
 Frame = -3

Query: 648 DQGRGNFPSQEERMDRPSREGHRRPDQHLLHRAGGVR-GGERHQLRHGGDVVRRV*EHRG 472
           D G G     EER   P  +     +     R G +R GGE      GG         RG
Sbjct: 598 DGGAGRTGRPEERA--PESKSGSGSESEPSSRGGSLRRGGEASGTSDGGPP-----PSRG 650

Query: 471 AHGGAGPHLRRRGGLHPHPGEQEPAAGADHGILRPASQLLRRQVPAGRRGILGAVKPPCC 292
           + GGA P+LR   GLHP+        G   G+  P + ++   +P     +  AV+PP  
Sbjct: 651 STGGA-PNLRAHPGLHPY--------GPPPGMALPYNPMMVVMMPPPPPPVPPAVQPPGA 701

Query: 291 GSARARG 271
              R  G
Sbjct: 702 PPVRDLG 708

>U269_DEIRA (Q9RXP1) Protein DR0269|
          Length = 322

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 47/159 (29%), Positives = 54/159 (33%), Gaps = 17/159 (10%)
 Frame = -3

Query: 648 DQGRGNFPSQEERMDRPSRE--GHRRPDQHLLH-RAGGVRGGERHQLR-----------H 511
           D   G     +E ++  S+E  G RR  + L   + GG RGG+R   R            
Sbjct: 101 DDLMGLLGEMKEMLEAQSKEIRGLRREMRELRESQGGGFRGGDRGGDRGGFRPREDRGGF 160

Query: 510 GGDVVR---RV*EHRGAHGGAGPHLRRRGGLHPHPGEQEPAAGADHGILRPASQLLRRQV 340
           GGD  R   R  E RG     G     RGG  P           D G  RP      R  
Sbjct: 161 GGDRDRGGFRPREDRGERSFGGDRGGDRGGFRPREDRGGFGGDRDRGGFRPREDRGERSF 220

Query: 339 PAGRRGILGAVKPPCCGSARARGGAFRFTHLRGGIFGDR 223
              R            G  R   G FR    RGG FGDR
Sbjct: 221 GGDR------------GGDRGGQGGFRPREDRGG-FGDR 246

>CUTL1_CANFA (P39881) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP) (Homeobox protein Clox) (Clox-1) (Fragment)
          Length = 975

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 30/81 (37%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
 Frame = -3

Query: 462  GAGPHLRRRGGLHPHPG-EQEPAAGADHGILRPASQL--------LRRQVPAGRRGILGA 310
            G GP   RRGG  P PG    PAA A     RP ++          RR    G R  L  
Sbjct: 833  GPGPGPGRRGGGGPAPGAPAAPAAAARGPSRRPGARAKPRRRRRRRRRHARGGGRRYLS- 891

Query: 309  VKPPCCGSARARGGAFRFTHL 247
             +P   G  RAR GA R + L
Sbjct: 892  -RPARGGPCRARDGAHRSSAL 911

>FOXD3_CHICK (P79772) Forkhead box protein D3 (HNF3/FH transcription factor|
           genesis) (Winged helix protein CWH-3)
          Length = 394

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -3

Query: 531 ERHQLRHGGDVVRRV*EHRGAHGGAGPHLRRRG---GLHPHPGE-QEPAAGADHGILRPA 364
           +RHQ  H  D    + +  GA+G AGP+ R  G   G +PHP   Q P       +L PA
Sbjct: 214 KRHQQEHLRDQTALMMQGFGAYGLAGPYGRPYGLPPGAYPHPAALQYPYIPPVGPMLPPA 273

Query: 363 SQLL 352
             LL
Sbjct: 274 CPLL 277

>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 496

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 24/73 (32%), Positives = 29/73 (39%)
 Frame = -3

Query: 618 EERMDRPSREGHRRPDQHLLHRAGGVRGGERHQLRHGGDVVRRV*EHRGAHGGAGPHLRR 439
           E+  DR  R+  R  D+    R+     GER     GGD  R     R   GG     RR
Sbjct: 53  EDDNDRKKRKRSRSRDRDTRRRSRSRDRGERRGGGGGGDRDRSRSRERRRGGGGRDEPRR 112

Query: 438 RGGLHPHPGEQEP 400
           RGG       +EP
Sbjct: 113 RGGDDEARSRREP 125

>FXR1_DROME (Q9NFU0) Fragile X mental retardation syndrome-related protein 1|
           (dFMR1) (dfxr)
          Length = 684

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
 Frame = -3

Query: 642 GRGNFPSQEERMDRPSREGHRRPDQHLLHRAGGVRGGERHQLRHGGDVVRRV*EHRGAHG 463
           G GN  +Q    +R   + +     H   +  G         R GGD       +RG  G
Sbjct: 437 GGGNGLNQRYHNNRRDEDDYNSRGDHQRDQQRGYND------RGGGD---NTGSYRGGGG 487

Query: 462 GAG-PHLRRRGGLHPHPGEQEPAAGADH 382
           GAG P   RRGG++  P   +   G D+
Sbjct: 488 GAGGPGNNRRGGINRRPPRNDQQNGRDY 515

>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2|
          Length = 1125

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
 Frame = +2

Query: 239 PPLRWVN-----RKAPPRARALPQQGGLTAPRMPRRPAGTWRRSS*EAGRSIPWSA---- 391
           PP R  N       +PP+  A P    ++ P +P RP     RS+ +    +P SA    
Sbjct: 129 PPTRPANPTPTPTSSPPKTAARPINAPISRPAIPSRPTAPTPRSANKPSSPVPPSAGGKD 188

Query: 392 PAAGSCS 412
           P AG  S
Sbjct: 189 PRAGQTS 195

>XYLT1_HUMAN (Q86Y38) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (XylT-I) (XT-I) (Peptide O-xylosyltransferase 1)
          Length = 959

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 22/69 (31%), Positives = 25/69 (36%)
 Frame = -3

Query: 600 PSREGHRRPDQHLLHRAGGVRGGERHQLRHGGDVVRRV*EHRGAHGGAGPHLRRRGGLHP 421
           P RE    P +    R GG  GG                   G  GG GP  R RGG   
Sbjct: 63  PRRERRDLPAEPAAARGGGGGGG-------------------GGGGGRGPQARARGGGPG 103

Query: 420 HPGEQEPAA 394
            P  Q+PA+
Sbjct: 104 EPRGQQPAS 112

>DHB_CRAPL (P22239) Desiccation-related protein clone PCC6-19 (CDET6-19)|
          Length = 155

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 20/59 (33%), Positives = 23/59 (38%)
 Frame = -3

Query: 558 HRAGGVRGGERHQLRHGGDVVRRV*EHRGAHGGAGPHLRRRGGLHPHPGEQEPAAGADH 382
           HR GG+ GG +   +HG   V         HG AG H    GGL         A G  H
Sbjct: 28  HRGGGIMGGGQQAGQHGTTGVL-------GHGTAGQHGTTGGGLGHGTAGTGGALGGQH 79

>ASH2L_HUMAN (Q9UBL3) Set1/Ash2 histone methyltransferase complex subunit ASH2|
           (ASH2-like protein)
          Length = 628

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = -3

Query: 471 AHGGAGPHLRRRGGLHPHPGEQEPAAGADHGILRPASQLLRRQVPAGRRGILGA--VKPP 298
           A  GAGP   +  G  P PG    A GA+ G ++P +       P G  GI  A  V+P 
Sbjct: 2   AAAGAGPG--QEAGAGPGPGAVANATGAEEGEMKPVA--AGAAAPPG-EGISAAPTVEP- 55

Query: 297 CCGSARARGGAFRFTHLRGGI 235
              S  A GG      + GG+
Sbjct: 56  --SSGEAEGGEANLVDVSGGL 74

>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit 10|
            (MHC class I region proline-rich protein CAT53) (Protein
            FB19)
          Length = 925

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 30/100 (30%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
 Frame = -3

Query: 642  GRGNFPSQEERMDRPSREGHRRPDQHLLHRAGGVRGGERHQLRHGGDVVRRV*EHRGAHG 463
            G G+ P +       S  GHR  +       GG+ GG R     GG +      H G  G
Sbjct: 751  GGGHRPHEGPGGGMSSGSGHRPHEGP----GGGMGGGHRPHEGPGGGMGGGHRPHEGPGG 806

Query: 462  GAG------PH------LRRRGGLHPHPGEQEPAAGADHG 379
            G G      PH      +   GG  PH G   P  G  HG
Sbjct: 807  GMGGGSGHRPHEGPGGGMGAGGGHRPHEG---PGHGGPHG 843

>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte|
           stimulating factor) (Superficial zone proteoglycan)
           [Contains: Proteoglycan-4 C-terminal part]
          Length = 1404

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 206 TRTAAPRSPKIPPLRWVNRKAPPRARALPQQGGLTAPRMPRRPAGT 343
           T+  AP +PK P        AP   ++ P      AP  P++PA T
Sbjct: 401 TKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPT 446

>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 28/106 (26%), Positives = 39/106 (36%)
 Frame = -3

Query: 639  RGNFPSQEERMDRPSREGHRRPDQHLLHRAGGVRGGERHQLRHGGDVVRRV*EHRGAHGG 460
            +G+  SQ+   +  S +  RR +    +  G  R     Q RHG    R   E R +HG 
Sbjct: 1590 QGSSVSQDRDSEGHSEDSERRSESASRNHYGSAR----EQSRHGSRNPRSHQEDRASHGH 1645

Query: 459  AGPHLRRRGGLHPHPGEQEPAAGADHGILRPASQLLRRQVPAGRRG 322
            +    R+ G  H        AA         +SQ   R  P  R G
Sbjct: 1646 SAESSRQSGTRHAETSSGGQAA---------SSQEQARSSPGERHG 1682

>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific|
            SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase
            complex subunit SET1) (SET-domain-containing protein 1A)
          Length = 1707

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 433  APAAKMRASPPVSAAVFSDPSDDVPAVPELMALSA 537
            APA +     P  AA+FS P+D+V   PE++   A
Sbjct: 1312 APALRPPEPVPAPAALFSSPADEVLEAPEVVVAEA 1346

>SIL1_CANGA (Q6FUS3) Nucleotide exchange factor SIL1 precursor|
          Length = 339

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 154 DVEDRHELVYWHFNVRLEFEKFDASFFIHELISLLFVLCIR 32
           D E  ++LV  HFN  L     DASF + EL S L +  +R
Sbjct: 87  DYEKGYDLVEQHFNKLLVGNNADASFKVRELASRLILGTLR 127

>DPOL_EHV1V (Q6S6P1) DNA polymerase (EC 2.7.7.7)|
          Length = 1220

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 191  VYDELTRTAAPRSPKIPPLRWVNRKAP 271
            +YDE   TAA +   +PP  WV R  P
Sbjct: 979  LYDEDVATAAAKVTDVPPAEWVGRPLP 1005


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,767,282
Number of Sequences: 219361
Number of extensions: 1449465
Number of successful extensions: 4965
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4956
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)