>R1AB_IBVBC (Q91QT2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p87; p195 (EC 3.4.22.-) (Papain-like
            proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like
            proteinase (EC 3.4.22.-) (3CL-
          Length = 6629

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 212  IALVPKCSEPGLIIVPCSCLRLYTCRTGVLDNKAADSWLLNCILSICIAPCFIVLIWGV 388
            +A V   S  GL +  C+   LY C    L+N    + ++NCI  +C   C+  L W V
Sbjct: 3264 LANVSSNSLIGLFVFKCAKWMLYYCNATYLNNYVLMAVMVNCIGWLC--TCYFGLYWWV 3320

>R1AB_IBVB (P27920) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p87; p195 (EC 3.4.22.-) (Papain-like
            proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like
            proteinase (EC 3.4.22.-) (3CL-P
          Length = 6629

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 212  IALVPKCSEPGLIIVPCSCLRLYTCRTGVLDNKAADSWLLNCILSICIAPCFIVLIWGV 388
            +A V   S  GL +  C+   LY C    L+N    + ++NCI  +C   C+  L W V
Sbjct: 3264 LANVSSNSLIGLFVFKCAKWMLYYCNATYLNNYVLMAVMVNCIGWLC--TCYFGLYWWV 3320

>TM7S4_HUMAN (Q9H295) Transmembrane 7 superfamily member 4 (Dendritic|
           cell-specific transmembrane protein) (DC-STAMP)
           (IL-4-induced protein) (FIND)
          Length = 470

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 311 AADSWLLNCILSICI--APCFIVLIWGVLHLKNCHVRDG 421
           AA SW++ C+L  C   A CFI+L++      +C +R+G
Sbjct: 61  AAASWIITCVLLCCSKHARCFILLVF-----LSCGLREG 94

>PAAD_BACSU (P94404) Probable aromatic acid decarboxylase (EC 4.1.1.-)|
          Length = 204

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +2

Query: 242 GLIIVPCSCLRLYTCRTGVLDN---KAADSWL 328
           G+I+ PCS   L + RTG+ DN   +AAD  L
Sbjct: 91  GMIVAPCSMKSLASIRTGMADNLLTRAADVML 122

>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
            domain-containing protein 4) (Multiple EGF-like domain
            protein 4)
          Length = 2386

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 203  LANIALVPKCSEPGLIIVPCSCLRLYTCRTGVLDNKAADSWLLNCI----LSICIAPCFI 370
            L N++ +P  S P L   P  C  L  C T  LD+K AD    +C+    L  C++P ++
Sbjct: 1582 LLNVSPMPVESSPPLPC-PTPCHLLPNC-TSCLDSKGADGGWQHCVWSSSLQQCLSPSYL 1639

Query: 371  VL 376
             L
Sbjct: 1640 PL 1641


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,929,758
Number of Sequences: 219361
Number of extensions: 1531985
Number of successful extensions: 3613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3612
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)