ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13o17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC102908.11| Mus musculus chromosome 16, clone RP24-288K2, co... 50 0.009
2gb|AC087840.16| Mus musculus strain C57BL/6J chromosome 16 clone... 50 0.009
3gb|AC009738.3| Drosophila melanogaster clone BACR02J10, complete... 46 0.13
4gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55... 46 0.13
5gb|AC004307.1|AC004307 Drosophila melanogaster DNA sequence (P1 ... 46 0.13
6gb|AC161520.6| Mus musculus chromosome 7, clone RP24-282D19, com... 44 0.52
7gb|AC162175.10| Mus musculus chromosome 7, clone RP23-327E18, co... 44 0.52
8gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 42 2.1
9gb|AC125109.3| Mus musculus BAC clone RP24-232H5 from chromosome... 42 2.1
10gb|AC125245.4| Homo sapiens BAC clone RP11-236P13 from 4, comple... 42 2.1
11gb|AC112227.4| Homo sapiens BAC clone RP13-552G12 from 4, comple... 42 2.1
12dbj|AP000057.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 42 2.1
13gb|AC144364.3| Didelphis virginiana clone LB3-157N2, complete se... 42 2.1
14dbj|AP001721.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 2.1
15gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 42 2.1
16emb|AL672270.12| Mouse DNA sequence from clone RP23-351A10 on ch... 42 2.1
17dbj|AP000331.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 42 2.1
18dbj|AP000172.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 42 2.1
19gb|AC170189.2| Mus musculus BAC clone RP23-103L12 from chromosom... 40 8.2
20gb|AC127685.4| Mus musculus BAC clone RP24-176M3 from chromosome... 40 8.2
21gb|AC124177.2| Mus musculus BAC clone RP23-193C10 from 3, comple... 40 8.2
22gb|AC099609.8| Mus musculus chromosome 7, clone RP23-376D24, com... 40 8.2
23gb|AC007270.2| Homo sapiens BAC clone GS1-77A9 from 7, complete ... 40 8.2
24gb|AC161033.18| Medicago truncatula clone mth2-57g13, complete s... 40 8.2
25emb|Z84719.1|HS340G1 Human DNA sequence from clone RP3-340G1 on ... 40 8.2
26emb|AL358873.25| Human DNA sequence from clone RP11-219A3 on chr... 40 8.2
27emb|AL008719.1|HS342B11 Human DNA sequence from clone CTA-342B11... 40 8.2
28emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 8.2
29emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 8.2
30gb|AC108508.2| Genomic sequence for Mus musculus, clone RP23-437... 40 8.2
31emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in ... 40 8.2
32gb|U05961.1|AH005352S1 Strongylocentrotus purpuratus SM30-alpha ... 40 8.2
33gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, com... 40 8.2
34gb|AC090796.13| Homo sapiens chromosome 8, clone RP11-246K15, co... 40 8.2
35gb|AC023678.4| Drosophila melanogaster 3L BAC RP98-14K14 (Roswel... 40 8.2
36gb|AC150876.29| Medicago truncatula clone mth2-28e19, complete s... 40 8.2
37gb|AC093437.2| Drosophila melanogaster 3L BAC RP98-5P17 (Roswell... 40 8.2
38gb|AC145334.12| Pan troglodytes clone rp43-24d7, complete sequence 40 8.2
39gb|AC002553.2| Homo sapiens chromosome , clone CTC-529I10, compl... 40 8.2
40gb|AC144923.7| Mus musculus chromosome 7, clone RP23-366A16, com... 40 8.2
41gb|AC154534.2| Mus musculus BAC clone RP23-469P20 from chromosom... 40 8.2
42gb|AC113955.20| Mus musculus chromosome 7, clone RP23-402K24, co... 40 8.2
43emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 i... 40 8.2
44gb|AC023787.8| Homo sapiens BAC clone RP11-546M8 from 2, complet... 40 8.2
45gb|AC015974.10| Homo sapiens BAC clone RP11-467A18 from 2, compl... 40 8.2
46gb|AC099627.10| Mus musculus chromosome 7, clone RP24-69E5, comp... 40 8.2
47gb|AC153522.4| Mus musculus 10 BAC RP23-8O1 (Roswell Park Cancer... 40 8.2
48emb|AL928805.18| Mouse DNA sequence from clone RP23-291H20 on ch... 40 8.2
49gb|AC148151.3| Monodelphis domestica clone VMRC6-414K6, complete... 40 8.2
50gb|AC102466.11| Mus musculus chromosome 3, clone RP24-337A2, com... 40 8.2
51gb|AE003542.3| Drosophila melanogaster chromosome 3L, section 43... 40 8.2
52emb|CT033779.9| Mouse DNA sequence from clone RP24-230F21 on chr... 40 8.2
53gb|AC153417.1| Mus musculus BAC clone RP24-169H4 from 9, complet... 40 8.2
54gb|AC134539.3| Mus musculus BAC clone RP24-400I3 from 10, comple... 40 8.2
55gb|AC133520.4| Mus musculus BAC clone RP23-185G9 from 8, complet... 40 8.2
56gb|AC161882.5| Mus musculus BAC clone RP23-134E24 from chromosom... 40 8.2
57gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 40 8.2
58emb|AL831759.5| Mouse DNA sequence from clone RP23-150J13 on chr... 40 8.2
59emb|AL713995.11| Mouse DNA sequence from clone RP23-423L9 on chr... 40 8.2
60emb|AL732402.5| Mouse DNA sequence from clone RP23-402I13 on chr... 40 8.2 
>gb|AC102908.11| Mus musculus chromosome 16, clone RP24-288K2, complete sequence
          Length = 174803

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 453   ttctctagcctgcagagaagcaaaaagaa 481
             ||||||||| |||||||||||||||||||
Sbjct: 54119 ttctctagcatgcagagaagcaaaaagaa 54091
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>gb|AC087840.16| Mus musculus strain C57BL/6J chromosome 16 clone rp23-240k10,
            complete sequence
          Length = 190761

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 453  ttctctagcctgcagagaagcaaaaagaa 481
            ||||||||| |||||||||||||||||||
Sbjct: 5691 ttctctagcatgcagagaagcaaaaagaa 5663
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>gb|AC009738.3| Drosophila melanogaster clone BACR02J10, complete sequence
          Length = 158491

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 316   tgactcttggctcttgaattgca 338
             |||||||||||||||||||||||
Sbjct: 37779 tgactcttggctcttgaattgca 37801
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>gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55 of 73 of the complete
              sequence
          Length = 248096

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 316    tgactcttggctcttgaattgca 338
              |||||||||||||||||||||||
Sbjct: 226449 tgactcttggctcttgaattgca 226427
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>gb|AC004307.1|AC004307 Drosophila melanogaster DNA sequence (P1 DS02074 (D199)), complete
             sequence
          Length = 30848

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 316   tgactcttggctcttgaattgca 338
             |||||||||||||||||||||||
Sbjct: 20190 tgactcttggctcttgaattgca 20212
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>gb|AC161520.6| Mus musculus chromosome 7, clone RP24-282D19, complete sequence
          Length = 165232

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 520   atttattttcacagggaaaaatcaaa 545
             ||||||||||||||||||| ||||||
Sbjct: 17441 atttattttcacagggaaatatcaaa 17466
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>gb|AC162175.10| Mus musculus chromosome 7, clone RP23-327E18, complete sequence
          Length = 224178

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 520   atttattttcacagggaaaaatcaaa 545
             ||||||||||||||||||| ||||||
Sbjct: 30186 atttattttcacagggaaatatcaaa 30161
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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 4       aaaaattctggagattgaggg 24
               |||||||||||||||||||||
Sbjct: 1000047 aaaaattctggagattgaggg 1000027
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>gb|AC125109.3| Mus musculus BAC clone RP24-232H5 from chromosome 3, complete sequence
          Length = 165361

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 465   cagagaagcaaaaagaatgcattat 489
             ||||||||||||||||||| |||||
Sbjct: 39098 cagagaagcaaaaagaatggattat 39122
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>gb|AC125245.4| Homo sapiens BAC clone RP11-236P13 from 4, complete sequence
          Length = 135923

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 554    catgatatatacatgagtaat 574
              |||||||||||||||||||||
Sbjct: 126871 catgatatatacatgagtaat 126891
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>gb|AC112227.4| Homo sapiens BAC clone RP13-552G12 from 4, complete sequence
          Length = 151609

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 554    catgatatatacatgagtaat 574
              |||||||||||||||||||||
Sbjct: 108368 catgatatatacatgagtaat 108388
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>dbj|AP000057.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 28/28, complete
             sequence
          Length = 107897

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 517   ctcatttattttcacagggaaaaatcaaa 545
             |||||||||||||| || |||||||||||
Sbjct: 53609 ctcatttattttcatagtgaaaaatcaaa 53637
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>gb|AC144364.3| Didelphis virginiana clone LB3-157N2, complete sequence
          Length = 140935

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 469   gaagcaaaaagaatgcattat 489
             |||||||||||||||||||||
Sbjct: 45579 gaagcaaaaagaatgcattat 45559
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>dbj|AP001721.1| Homo sapiens genomic DNA, chromosome 21q, section 65/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 517   ctcatttattttcacagggaaaaatcaaa 545
             |||||||||||||| || |||||||||||
Sbjct: 95480 ctcatttattttcatagtgaaaaatcaaa 95508
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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 469   gaagcaaaaagaatgcattat 489
             |||||||||||||||||||||
Sbjct: 45579 gaagcaaaaagaatgcattat 45559
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>emb|AL672270.12| Mouse DNA sequence from clone RP23-351A10 on chromosome X, complete
              sequence
          Length = 220691

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 141    acttcttttagttctagaact 161
              |||||||||||||||||||||
Sbjct: 206785 acttcttttagttctagaact 206805
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>dbj|AP000331.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:PQ122C7/499A22, complete sequence
          Length = 64326

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 517   ctcatttattttcacagggaaaaatcaaa 545
             |||||||||||||| || |||||||||||
Sbjct: 10200 ctcatttattttcatagtgaaaaatcaaa 10228
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>dbj|AP000172.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B2344F14-f50E8, segment 8/9, complete sequence
          Length = 100000

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 517   ctcatttattttcacagggaaaaatcaaa 545
             |||||||||||||| || |||||||||||
Sbjct: 44239 ctcatttattttcatagtgaaaaatcaaa 44267
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>gb|AC170189.2| Mus musculus BAC clone RP23-103L12 from chromosome 3, complete sequence
          Length = 204731

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    gtttttactatttctctagc 461
              ||||||||||||||||||||
Sbjct: 143648 gtttttactatttctctagc 143629
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>gb|AC127685.4| Mus musculus BAC clone RP24-176M3 from chromosome 3, complete sequence
          Length = 166417

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 442    gtttttactatttctctagc 461
              ||||||||||||||||||||
Sbjct: 106759 gtttttactatttctctagc 106778
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>gb|AC124177.2| Mus musculus BAC clone RP23-193C10 from 3, complete sequence
          Length = 217266

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    acttctacactgaatcactt 515
              ||||||||||||||||||||
Sbjct: 114720 acttctacactgaatcactt 114701
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>gb|AC099609.8| Mus musculus chromosome 7, clone RP23-376D24, complete sequence
          Length = 226284

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 tagataataaagctgctgac 319
           ||||||||||||||||||||
Sbjct: 941 tagataataaagctgctgac 922
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>gb|AC007270.2| Homo sapiens BAC clone GS1-77A9 from 7, complete sequence
          Length = 182958

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  agaacctggcttgattattg 254
            ||||||||||||||||||||
Sbjct: 4592 agaacctggcttgattattg 4573
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>gb|AC161033.18| Medicago truncatula clone mth2-57g13, complete sequence
          Length = 109039

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   gtctatgaacttcttttagt 152
             ||||||||||||||||||||
Sbjct: 45902 gtctatgaacttcttttagt 45883
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>emb|Z84719.1|HS340G1 Human DNA sequence from clone RP3-340G1 on chromosome 6q16, complete
              sequence
          Length = 124010

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 535    gaaaaatcaaacaaaagcacatga 558
              ||||||||||||||||||| ||||
Sbjct: 122590 gaaaaatcaaacaaaagcagatga 122613
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>emb|AL358873.25| Human DNA sequence from clone RP11-219A3 on chromosome 6, complete
           sequence
          Length = 93029

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 535 gaaaaatcaaacaaaagcacatga 558
           ||||||||||||||||||| ||||
Sbjct: 580 gaaaaatcaaacaaaagcagatga 603
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>emb|AL008719.1|HS342B11 Human DNA sequence from clone CTA-342B11 on chromosome 22q12.1-12.3
            Contains a novel gene and a CpG island, complete sequence
          Length = 56458

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    ttctggagattgagggcaat 28
            ||||||||||||||||||||
Sbjct: 3356 ttctggagattgagggcaat 3375
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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 304     taataaagctgctgactcttggct 327
               ||||||||||||||| ||||||||
Sbjct: 1252609 taataaagctgctgattcttggct 1252632
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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 304     taataaagctgctgactcttggct 327
               ||||||||||||||| ||||||||
Sbjct: 1274515 taataaagctgctgattcttggct 1274538
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>gb|AC108508.2| Genomic sequence for Mus musculus, clone RP23-437O14, complete sequence
          Length = 196162

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    ggtgctagataataaagctg 314
              ||||||||||||||||||||
Sbjct: 171770 ggtgctagataataaagctg 171751
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>emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in linkage group 14,
             complete sequence
          Length = 189425

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 521   tttattttcacagggaaaaatcaa 544
             |||||||||||||||| |||||||
Sbjct: 43763 tttattttcacagggagaaatcaa 43786
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>gb|U05961.1|AH005352S1 Strongylocentrotus purpuratus SM30-alpha protein (SM3) gene, exon 1
          Length = 2963

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 553 acatgatatatacatgagtaatca 576
           ||||||||||||||||| ||||||
Sbjct: 345 acatgatatatacatgattaatca 322
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>gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, complete sequence
          Length = 191037

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   agaatgcattatttcatgac 497
             ||||||||||||||||||||
Sbjct: 90161 agaatgcattatttcatgac 90142
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>gb|AC090796.13| Homo sapiens chromosome 8, clone RP11-246K15, complete sequence
          Length = 168055

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 478  agaatgcattatttcatgac 497
            ||||||||||||||||||||
Sbjct: 9619 agaatgcattatttcatgac 9600
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>gb|AC023678.4| Drosophila melanogaster 3L BAC RP98-14K14 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 186990

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   tggggtgctagataataaag 311
             ||||||||||||||||||||
Sbjct: 57292 tggggtgctagataataaag 57273
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>gb|AC150876.29| Medicago truncatula clone mth2-28e19, complete sequence
          Length = 91361

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   gtctatgaacttcttttagt 152
             ||||||||||||||||||||
Sbjct: 74515 gtctatgaacttcttttagt 74534
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>gb|AC093437.2| Drosophila melanogaster 3L BAC RP98-5P17 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 197878

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    tggggtgctagataataaag 311
              ||||||||||||||||||||
Sbjct: 162031 tggggtgctagataataaag 162050
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>gb|AC145334.12| Pan troglodytes clone rp43-24d7, complete sequence
          Length = 139632

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      ttctggagattgagggcaat 28
              ||||||||||||||||||||
Sbjct: 115016 ttctggagattgagggcaat 114997
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>gb|AC002553.2| Homo sapiens chromosome , clone CTC-529I10, complete sequence
          Length = 158314

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   aataaagctgctgactcttg 324
             ||||||||||||||||||||
Sbjct: 20646 aataaagctgctgactcttg 20627
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>gb|AC144923.7| Mus musculus chromosome 7, clone RP23-366A16, complete sequence
          Length = 177745

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  cttcttttagttctagaact 161
            ||||||||||||||||||||
Sbjct: 4126 cttcttttagttctagaact 4145
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>gb|AC154534.2| Mus musculus BAC clone RP23-469P20 from chromosome 16, complete
            sequence
          Length = 178462

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  cttcttttagttctagaact 161
            ||||||||||||||||||||
Sbjct: 9953 cttcttttagttctagaact 9972
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>gb|AC113955.20| Mus musculus chromosome 7, clone RP23-402K24, complete sequence
          Length = 196206

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   atttctctagcctgcagaga 470
             ||||||||||||||||||||
Sbjct: 47581 atttctctagcctgcagaga 47562
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>emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 in linkage group 8,
            complete sequence
          Length = 168607

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 521  tttattttcacagggaaaaatcaa 544
            |||||||||||||||| |||||||
Sbjct: 4691 tttattttcacagggagaaatcaa 4714
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>gb|AC023787.8| Homo sapiens BAC clone RP11-546M8 from 2, complete sequence
          Length = 144620

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   aatgtctatgaacttcttttagtt 153
             ||||||||| ||||||||||||||
Sbjct: 29965 aatgtctataaacttcttttagtt 29988
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>gb|AC015974.10| Homo sapiens BAC clone RP11-467A18 from 2, complete sequence
          Length = 196544

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 474    aaaaagaatgcattatttca 493
              ||||||||||||||||||||
Sbjct: 110540 aaaaagaatgcattatttca 110521
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>gb|AC099627.10| Mus musculus chromosome 7, clone RP24-69E5, complete sequence
          Length = 244051

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   tagataataaagctgctgac 319
             ||||||||||||||||||||
Sbjct: 22706 tagataataaagctgctgac 22725
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>gb|AC153522.4| Mus musculus 10 BAC RP23-8O1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 238562

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   cttcttttagttctagaact 161
             ||||||||||||||||||||
Sbjct: 97564 cttcttttagttctagaact 97583
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>emb|AL928805.18| Mouse DNA sequence from clone RP23-291H20 on chromosome 2, complete
              sequence
          Length = 192688

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 511    cactttctcatttattttca 530
              ||||||||||||||||||||
Sbjct: 173036 cactttctcatttattttca 173017
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>gb|AC148151.3| Monodelphis domestica clone VMRC6-414K6, complete sequence
          Length = 158302

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 468    agaagcaaaaagaatgcatt 487
              ||||||||||||||||||||
Sbjct: 100771 agaagcaaaaagaatgcatt 100752
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>gb|AC102466.11| Mus musculus chromosome 3, clone RP24-337A2, complete sequence
          Length = 164455

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 378  tctggggagtcctccatcttaaaa 401
            ||||||||||||| ||||||||||
Sbjct: 8583 tctggggagtcctacatcttaaaa 8560
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>gb|AE003542.3| Drosophila melanogaster chromosome 3L, section 43 of 83 of the complete
              sequence
          Length = 303022

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    tggggtgctagataataaag 311
              ||||||||||||||||||||
Sbjct: 129824 tggggtgctagataataaag 129843
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>emb|CT033779.9| Mouse DNA sequence from clone RP24-230F21 on chromosome 9, complete
             sequence
          Length = 161997

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   attgcatcttgtctatttgt 352
             ||||||||||||||||||||
Sbjct: 31223 attgcatcttgtctatttgt 31242
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>gb|AC153417.1| Mus musculus BAC clone RP24-169H4 from 9, complete sequence
          Length = 175520

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    attgcatcttgtctatttgt 352
              ||||||||||||||||||||
Sbjct: 174265 attgcatcttgtctatttgt 174284
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>gb|AC134539.3| Mus musculus BAC clone RP24-400I3 from 10, complete sequence
          Length = 166054

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   cttcttttagttctagaact 161
             ||||||||||||||||||||
Sbjct: 21302 cttcttttagttctagaact 21283
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>gb|AC133520.4| Mus musculus BAC clone RP23-185G9 from 8, complete sequence
          Length = 201054

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    ttcttttagttctagaacta 162
              ||||||||||||||||||||
Sbjct: 107799 ttcttttagttctagaacta 107780
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>gb|AC161882.5| Mus musculus BAC clone RP23-134E24 from chromosome 16, complete
             sequence
          Length = 206219

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   cttcttttagttctagaact 161
             ||||||||||||||||||||
Sbjct: 26581 cttcttttagttctagaact 26562
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 468    agaagcaaaaagaatgcatt 487
              ||||||||||||||||||||
Sbjct: 100771 agaagcaaaaagaatgcatt 100752
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>emb|AL831759.5| Mouse DNA sequence from clone RP23-150J13 on chromosome X, complete
             sequence
          Length = 29788

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   tttctcatttattttcacag 533
             ||||||||||||||||||||
Sbjct: 23832 tttctcatttattttcacag 23851
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>emb|AL713995.11| Mouse DNA sequence from clone RP23-423L9 on chromosome 4, complete
            sequence
          Length = 103260

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  ggtgctagataataaagctg 314
            ||||||||||||||||||||
Sbjct: 5205 ggtgctagataataaagctg 5186
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>emb|AL732402.5| Mouse DNA sequence from clone RP23-402I13 on chromosome 11, complete
             sequence
          Length = 103449

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   ggaaaaatcaaacaaaagca 553
             ||||||||||||||||||||
Sbjct: 80330 ggaaaaatcaaacaaaagca 80311


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,736,560
Number of Sequences: 3902068
Number of extensions: 6736560
Number of successful extensions: 148361
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148092
Number of HSP's gapped (non-prelim): 269
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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