>emb|BX001047.7| Zebrafish DNA sequence from clone CH211-288D18 in linkage group 7,
             complete sequence
          Length = 87084

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 175   tgaatccgaatcaagtattcca 196
             ||||||||||||||||||||||
Sbjct: 63976 tgaatccgaatcaagtattcca 63955

>ref|NM_106254.2| Arabidopsis thaliana RNA binding / pseudouridine synthase/
           pseudouridylate synthase AT1G76050 transcript variant
           AT1G76050.1 mRNA, complete cds
          Length = 2223

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 gaaacattttcagatgatgaa 263
           |||||||||||||||||||||
Sbjct: 616 gaaacattttcagatgatgaa 636

>ref|NM_202422.1| Arabidopsis thaliana RNA binding / pseudouridine synthase/
           pseudouridylate synthase AT1G76050 transcript variant
           AT1G76050.2 mRNA, complete cds
          Length = 2239

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 gaaacattttcagatgatgaa 263
           |||||||||||||||||||||
Sbjct: 651 gaaacattttcagatgatgaa 671

>gb|AC109329.8| Homo sapiens chromosome 8, clone CTD-3107M8, complete sequence
          Length = 215644

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 232  gaagcaaatctgaaacattttcaga 256
            |||||||||||| ||||||||||||
Sbjct: 4070 gaagcaaatctggaacattttcaga 4046

>gb|AC090820.6| Homo sapiens chromosome 8, clone CTD-2345M20, complete sequence
          Length = 138021

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 232   gaagcaaatctgaaacattttcaga 256
             |||||||||||| ||||||||||||
Sbjct: 50604 gaagcaaatctggaacattttcaga 50580

>emb|BX816325.1|CNS0ACDU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH41ZA09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1616

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 gaaacattttcagatgatgaa 263
           |||||||||||||||||||||
Sbjct: 650 gaaacattttcagatgatgaa 670

>gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
             complete sequence
          Length = 95870

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 243   gaaacattttcagatgatgaa 263
             |||||||||||||||||||||
Sbjct: 90589 gaaacattttcagatgatgaa 90609

>dbj|AK117781.1| Arabidopsis thaliana At1g76050 mRNA for putative RNA
           pseudouridylate synthase, complete cds, clone:
           RAFL17-47-D22
          Length = 1546

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 gaaacattttcagatgatgaa 263
           |||||||||||||||||||||
Sbjct: 608 gaaacattttcagatgatgaa 628

>gb|AC168274.5| Mus musculus  BAC RP23-229B1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 177020

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     acacattacataaatacatt 24
             ||||||||||||||||||||
Sbjct: 32443 acacattacataaatacatt 32424

>gb|AC169505.1| Mus musculus BAC clone RP24-257J8 from chromosome 16, complete sequence
          Length = 138498

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    tctgaaacattttcagatga 259
              ||||||||||||||||||||
Sbjct: 132960 tctgaaacattttcagatga 132941

>gb|AC005372.1| Homo sapiens chromosome 5, P1 clone 1195e2 (LBNL H73), complete
             sequence
          Length = 44957

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     acacattacataaatacatt 24
             ||||||||||||||||||||
Sbjct: 25180 acacattacataaatacatt 25161

>emb|CR759765.6| Zebrafish DNA sequence from clone DKEY-1F12 in linkage group 17, complete
              sequence
          Length = 224482

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    aatccgaatcaagtattcca 196
              ||||||||||||||||||||
Sbjct: 100273 aatccgaatcaagtattcca 100292

>gb|AC073418.6| Homo sapiens BAC clone RP11-334C6 from 7, complete sequence
          Length = 83743

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 4     gacacattacataaatacattgtc 27
             |||||||||||||||| |||||||
Sbjct: 23075 gacacattacataaatccattgtc 23098

>emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chromosome 9 Contains two
             novel pseudogenes, a novel gene, a pseudogene similar to
             part of double homeobox, 4 (DUX4), a FSHD region gene 1
             (FRG1) pseudogene and four CpG islands, complete sequence
          Length = 191980

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 37274 atagttaattttctcctaaa 37255

>emb|BX119919.5| Human DNA sequence from clone RP11-987D21 on chromosome X, complete
            sequence
          Length = 55442

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  aaatctgaaacattttcaga 256
            ||||||||||||||||||||
Sbjct: 1956 aaatctgaaacattttcaga 1937

>emb|AL591385.7| Human DNA sequence from clone RP11-391M20 on chromosome 9 Contains a
             novel gene similar to phosphoglucomutase 5 (PGM5), a
             pseudogene similar to part of FSHD region gene 1 (FRG1)
             and two CpG island, complete sequence
          Length = 174765

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 40871 atagttaattttctcctaaa 40852

>emb|AL353763.14| Human DNA sequence from clone RP11-87H9 on chromosome 9 Contains a
              pseudogene similar to part of FSHD region gene 1 (FRG1), a
              pseudogene similar to part of phosphoglucomutase 5 (PGM5)
              and a CpG island, complete sequence
          Length = 157266

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     atagttaattttctcctaaa 59
              ||||||||||||||||||||
Sbjct: 102143 atagttaattttctcctaaa 102162

>emb|AL831791.5| Zebrafish DNA sequence from clone DKEY-76P14 in linkage group 11
             Contains a novel gene similar to human and rodent RRAD
             (Ras-related protein associated with diabetes), a novel
             gene, a novel gene similar to mouse PNP (purine-nucleoside
             phosphorylase), a novel gene similar to human and rodent
             SOX11 (SRY (sex determining region Y)-box 11) and a CpG
             island, complete sequence
          Length = 204498

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 177   aatccgaatcaagtattccatttc 200
             |||| |||||||||||||||||||
Sbjct: 18413 aatcagaatcaagtattccatttc 18390

>emb|AL445925.19| Human DNA sequence from clone RP11-403A15 on chromosome 9 Contains a
             pseudogene similar to part of FSHD region gene 1 (FSG1)
             (FRG1), a pseudogene similar to part of phosphoglucomutase
             5 (PGRM) (PGM5) and four CpG islands, complete sequence
          Length = 196461

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 42983 atagttaattttctcctaaa 42964

>gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complete sequence
          Length = 153040

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 91436 atagttaattttctcctaaa 91417

>gb|AC093749.3| Homo sapiens BAC clone RP11-30B7 from 4, complete sequence
          Length = 163102

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   atagttaattttctcctaaa 59
            ||||||||||||||||||||
Sbjct: 9061 atagttaattttctcctaaa 9080

>gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chromosome 20, complete
             sequence
          Length = 162793

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 15961 atagttaattttctcctaaa 15980

>gb|AC010301.7| Homo sapiens chromosome 5 clone CTB-2L9, complete sequence
          Length = 155067

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      acacattacataaatacatt 24
              ||||||||||||||||||||
Sbjct: 111586 acacattacataaatacatt 111567

>emb|CR387925.5| Human DNA sequence from clone RP11-58A12 on chromosome 9, complete
             sequence
          Length = 172519

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    atagttaattttctcctaaa 59
             ||||||||||||||||||||
Sbjct: 13755 atagttaattttctcctaaa 13736

>gb|AF039717.2| Caenorhabditis elegans cosmid R13H8, complete sequence
          Length = 19120

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  caaatctgaaacattttcag 255
            ||||||||||||||||||||
Sbjct: 2275 caaatctgaaacattttcag 2256

>gb|AC079176.15| Homo sapiens X BAC RP11-325D5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186278

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    aaatctgaaacattttcaga 256
              ||||||||||||||||||||
Sbjct: 182651 aaatctgaaacattttcaga 182632

>gb|AC009213.5|AC009213 Drosophila melanogaster, chromosome 3R, region 98D-98D, BAC clone
             BACR09F18, complete sequence
          Length = 182525

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 26    tctttacntgatttatagttaat 48
             ||||||| |||||||||||||||
Sbjct: 61362 tctttacgtgatttatagttaat 61340

>dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1
          Length = 87210

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 36    atttatagttaattttctcctaaa 59
             |||||| |||||||||||||||||
Sbjct: 71358 atttatcgttaattttctcctaaa 71335

>emb|AL592183.10| Human DNA sequence from clone RP11-297D8 on chromosome 22, complete
              sequence
          Length = 179198

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     atagttaattttctcctaaa 59
              ||||||||||||||||||||
Sbjct: 125158 atagttaattttctcctaaa 125177

>gb|AE003765.3| Drosophila melanogaster chromosome 3R, section 103 of 118 of the complete
              sequence
          Length = 239049

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 26     tctttacntgatttatagttaat 48
              ||||||| |||||||||||||||
Sbjct: 191741 tctttacgtgatttatagttaat 191719

>gb|AC121135.9| Mus musculus chromosome 18, clone RP23-328A22, complete sequence
          Length = 189515

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    ccagggaggaacataccaac 168
              ||||||||||||||||||||
Sbjct: 121867 ccagggaggaacataccaac 121848

>gb|AC113936.16| Mus musculus chromosome 10, clone RP23-9F21, complete sequence
          Length = 205086

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     acacattacataaatacatt 24
             ||||||||||||||||||||
Sbjct: 48718 acacattacataaatacatt 48737

>emb|AL837516.14| Mouse DNA sequence from clone RP23-234L8 on chromosome 2, complete
              sequence
          Length = 202046

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aatgacacattacataaata 20
              ||||||||||||||||||||
Sbjct: 162929 aatgacacattacataaata 162910

>gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-33e9, complete sequence
          Length = 127190

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   gaaacattttcagatgatga 262
             ||||||||||||||||||||
Sbjct: 54557 gaaacattttcagatgatga 54576


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,814,938
Number of Sequences: 3902068
Number of extensions: 2814938
Number of successful extensions: 57463
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57413
Number of HSP's gapped (non-prelim): 50
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)