ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14d14 |
|---|---|
| Clone Library Name | barley_pub |
>DAPA_YERPS (Q668F7) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 293 Score = 32.7 bits (73), Expect = 1.0 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 466 VYATVVPARWGAARVGVL*NSTMRLP 543 V A +P +W A R+G++ N TMRLP Sbjct: 246 VEANPIPVKWAAKRLGLMANDTMRLP 271
>DAPA_YERPE (Q8ZCD0) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 293 Score = 32.7 bits (73), Expect = 1.0 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 466 VYATVVPARWGAARVGVL*NSTMRLP 543 V A +P +W A R+G++ N TMRLP Sbjct: 246 VEANPIPVKWAAKRLGLMANDTMRLP 271
>YCF1_PINTH (P41647) Hypothetical 205.3 kDa protein ycf1 (ORF 1756)| Length = 1756 Score = 31.2 bits (69), Expect = 2.9 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Frame = -1 Query: 532 LWSSRAHQRAPPPTSPVPL*HTRSPIHQTISTSIVVPFRSVVYNKEK-HRAKQRITKPPI 356 LW H+ P P P+P RS + TIS++ P N+ K + I P I Sbjct: 475 LWQELEHESFPLPWEPLPTYTVRSLVPVTISSNPGTPQPKYALNRLKMKKISYLIQTPEI 534 Query: 355 AAPLRFW 335 P W Sbjct: 535 QPPYWLW 541
>NCLN_HUMAN (Q969V3) Nicalin precursor (Nicastrin-like protein)| Length = 563 Score = 30.8 bits (68), Expect = 3.8 Identities = 23/66 (34%), Positives = 28/66 (42%) Frame = +3 Query: 288 VVVTHYPALPCAGLLVQKRRGAAMGGFVILCLARCFSLLYTTERNGTTIEVDMV*WMGER 467 V+V HY A A L G V+L LAR FS LYT +R + G + Sbjct: 220 VIVAHYDAFGVAPWLSLGADSNGSGVSVLLELARLFSRLYTYKRTHAAYNLLFFASGGGK 279 Query: 468 VCYSGT 485 Y GT Sbjct: 280 FNYQGT 285
>NCLN_RAT (Q5XIA1) Nicalin precursor (Nicastrin-like protein)| Length = 563 Score = 30.4 bits (67), Expect = 5.0 Identities = 23/66 (34%), Positives = 28/66 (42%) Frame = +3 Query: 288 VVVTHYPALPCAGLLVQKRRGAAMGGFVILCLARCFSLLYTTERNGTTIEVDMV*WMGER 467 V+V HY A A L G V+L LAR FS LYT +R + G + Sbjct: 220 VIVAHYDAFGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGK 279 Query: 468 VCYSGT 485 Y GT Sbjct: 280 FNYQGT 285
>NCLN_MOUSE (Q8VCM8) Nicalin precursor (Nicastrin-like protein)| Length = 563 Score = 30.4 bits (67), Expect = 5.0 Identities = 23/66 (34%), Positives = 28/66 (42%) Frame = +3 Query: 288 VVVTHYPALPCAGLLVQKRRGAAMGGFVILCLARCFSLLYTTERNGTTIEVDMV*WMGER 467 V+V HY A A L G V+L LAR FS LYT +R + G + Sbjct: 220 VIVAHYDAFGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGK 279 Query: 468 VCYSGT 485 Y GT Sbjct: 280 FNYQGT 285
>ZC3H3_HUMAN (Q8IXZ2) Zinc finger CCCH-type domain-containing protein 3| Length = 948 Score = 30.4 bits (67), Expect = 5.0 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = -2 Query: 621 PVHPAGHRQQLPLRQATQGHPSPVALRQPHCGVLEHTNAR--RPPPRRYH 478 P A L RQA +G SPV + P+ G+++ T R R PP R H Sbjct: 466 PAATAKSHLSLRRRQALRGKSSPVLKKTPNKGLVQVTTHRLCRLPPSRAH 515
>BIM1_ARATH (Q9LEZ3) Transcription factor BIM1 (BES1-interacting Myc-like| protein 1) (Transcription factor EN 126) (AtbHLH 46) Length = 530 Score = 30.4 bits (67), Expect = 5.0 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = -1 Query: 526 SSRAHQRAPPPTSPVPL*HTRSPIHQTISTSIVVPFRSVVYNKEKHRAKQRITKPPIAAP 347 ++ A ++ PPP P PL H T + S + F H QRI KP ++ P Sbjct: 70 TTTASEKPPPPAPPPPLQHVLPGGIGTYTISPIPYF---------HHHHQRIPKPELSPP 120 Query: 346 LRF 338 + F Sbjct: 121 MMF 123
>LATS1_HUMAN (O95835) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large| tumor suppressor homolog 1) (WARTS protein kinase) (h-warts) Length = 1130 Score = 29.6 bits (65), Expect = 8.6 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = -2 Query: 627 LHPVHPAGHRQQLPLRQAT---QGHPSPVALRQPHCGVLEHTNARRPPPRRYHCSIHVHP 457 L P HP+ Q + Q + +G S V + P V E N + PPP +H +P Sbjct: 512 LAPTHPSWIPQPIQTVQPSPFPEGTASNVTVMPP---VAEAPNYQGPPPPYPKHLLHQNP 568 Query: 456 SIKPY 442 S+ PY Sbjct: 569 SVPPY 573
>ASCL2_RAT (P19360) Achaete-scute homolog 2| Length = 260 Score = 29.6 bits (65), Expect = 8.6 Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 1/76 (1%) Frame = +2 Query: 287 SSGDSLSRIALRRPPRPEAQRCGNGGLRYXXXXXXXXXVVYNRTERNNYRGRYGLMD-G* 463 SSG + + A RRPP PE RC V R ER R R L++ G Sbjct: 81 SSGVAGACTARRRPPSPELLRCSRRRRSGATEASSSSAAVARRNERE--RNRVKLVNLGF 138 Query: 464 TCMLQWYRRGGGRRAL 511 + Q GG + L Sbjct: 139 QALRQHVPHGGANKKL 154
>PACS1_RAT (O88588) Phosphofurin acidic cluster sorting protein 1 (PACS-1)| Length = 961 Score = 29.6 bits (65), Expect = 8.6 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Frame = -3 Query: 665 TSGGSDKSSVVQSFTPST-PPATANSYRSAKRRKGIPHRSPFGSLIVEF*STPTRAAPHL 489 T+G D S VV PST PP+++ R A P SP S + +P + Sbjct: 761 TAGDGDDSPVVSLTVPSTSPPSSSGLSRDA---TATPPSSPSMSSALAIVGSPNSPYGDV 817 Query: 488 AGTTVAYTFTHP 453 G V Y HP Sbjct: 818 IGLQVDYWLGHP 829
>PACS1_MOUSE (Q8K212) Phosphofurin acidic cluster sorting protein 1 (PACS-1)| Length = 961 Score = 29.6 bits (65), Expect = 8.6 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Frame = -3 Query: 665 TSGGSDKSSVVQSFTPST-PPATANSYRSAKRRKGIPHRSPFGSLIVEF*STPTRAAPHL 489 T+G D S VV PST PP+++ R A P SP S + +P + Sbjct: 761 TAGDGDDSPVVSLTVPSTSPPSSSGLSRDA---TATPPSSPSMSSALAIVGSPNSPYGDV 817 Query: 488 AGTTVAYTFTHP 453 G V Y HP Sbjct: 818 IGLQVDYWLGHP 829
>PACS1_HUMAN (Q6VY07) Phosphofurin acidic cluster sorting protein 1 (PACS-1)| Length = 963 Score = 29.6 bits (65), Expect = 8.6 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Frame = -3 Query: 665 TSGGSDKSSVVQSFTPST-PPATANSYRSAKRRKGIPHRSPFGSLIVEF*STPTRAAPHL 489 T+G D S VV PST PP+++ R A P SP S + +P + Sbjct: 763 TAGDGDDSPVVSLTVPSTSPPSSSGLSRDA---TATPPSSPSMSSALAIVGSPNSPYGDV 819 Query: 488 AGTTVAYTFTHP 453 G V Y HP Sbjct: 820 IGLQVDYWLGHP 831 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,955,254 Number of Sequences: 219361 Number of extensions: 1737892 Number of successful extensions: 5525 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5513 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
