>SYI_XANAC (Q8PN19) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 943

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
 Frame = -3

Query: 545 RWTCILQMSGSNQMASDGKFGNGPRELTGAVDLISRYRLLNHHSFFCKKPLPLAISDTHY 366
           RW  I +   +  +A   ++G G   + G     +   +L +H F+ ++ +PL + D   
Sbjct: 276 RWLVIAEALAAKALA---RYGVGEVVVHGHAKGAALEHMLLNHPFYAEREIPLLLGDHVS 332

Query: 365 LQNVVGDTEIRKGEGMEIDQLIQNPALREK-KTAYIQPFDMETLGHAFQLRETAPV 201
            ++  G      G G E  Q+ +   L E+   A I P D    G    L  T P+
Sbjct: 333 AEDGTGAVHTAPGHGQEDYQVSKQYGLLERYGAAQINPVD----GRGVYLPSTPPL 384

>VL1_HPV27 (P36736) Major capsid protein L1|
          Length = 594

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
 Frame = -3

Query: 509 QMASDGKFGNGPRELTGAVDLISRYRLLNHHSFFCKKPLPLAISDTHYLQNVVGDTEIRK 330
           Q+  D  FG  P     +  L   YR L   +  C+KP P       Y      D ++R+
Sbjct: 502 QLLEDWNFGVPPPP---SASLQDTYRYLQSQAITCQKPTPPKTPTDPYANMTFWDVDLRE 558

Query: 329 GEGMEIDQ-------LIQ---NPALREKKTA 267
              M++DQ       L+Q    P +  K+TA
Sbjct: 559 SFSMDLDQFPLGRKFLLQRGTTPTVSRKRTA 589

>SYI_XANC5 (Q3BW42) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 943

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
 Frame = -3

Query: 545 RWTCILQMSGSNQMASDGKFGNGPRELTGAVDLISRYRLLNHHSFFCKKPLPLAISDTHY 366
           RW  I +   +  +A   ++G     + G     +  ++L +H F+ ++ +PL + D   
Sbjct: 276 RWLVIAEALAAKALA---RYGVDAVVVHGHAKGAALEQMLLNHPFYAEREIPLLLGDHVS 332

Query: 365 LQNVVGDTEIRKGEGMEIDQLIQNPALREK-KTAYIQPFDMETLGHAFQLRETAPV 201
            ++  G      G G E  Q+ ++  L E+   A I P D    G    L  T P+
Sbjct: 333 AEDGTGAVHTAPGHGQEDYQVSRHYGLLERYGAAQINPVD----GRGVYLPSTPPL 384

>SYI_XANOR (Q5H2E1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 943

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
 Frame = -3

Query: 545 RWTCILQMSGSNQMASDGKFGNGPRELTGAVDLISRYRLLNHHSFFCKKPLPLAISDTHY 366
           RW  I +   +  +A   ++G     + G     +  ++L +H F+ ++ +PL + D   
Sbjct: 276 RWLVIAEALAAKALA---RYGVDEVVVHGHAKGTALEQMLLNHPFYAEREIPLLLGDHVS 332

Query: 365 LQNVVGDTEIRKGEGMEIDQLIQNPALREK-KTAYIQPFDMETLGHAFQLRETAPV 201
            ++  G      G G E  Q+ +   L E+   A I P D    G    L  T P+
Sbjct: 333 AEDGTGAVHTAPGHGQEDYQVSKQYGLLERYGAAQINPVD----GRGVYLPSTPPL 384

>ACY2_RAT (Q9R1T5) Aspartoacylase (EC 3.5.1.15) (Aminoacylase-2) (ACY-2)|
          Length = 314

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = -3

Query: 374 THYLQNVVGDTEIRKGEGMEIDQLIQNPALREKKTAYI-----QPFDMETLGHAFQLRET 210
           TH+L+N     E+ +  G+E+   I NP   EK T YI     + FD+E L    ++ E 
Sbjct: 31  THWLKN---GAEVHRA-GLEVKPFITNPRAVEKCTRYIDCDLNRVFDLENLSK--EMSED 84

Query: 209 APVDLPSAEK 180
            P ++  A++
Sbjct: 85  LPYEVRRAQE 94

>VL1_HPV2A (P25486) Major capsid protein L1|
          Length = 510

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 18/68 (26%), Positives = 27/68 (39%)
 Frame = -3

Query: 509 QMASDGKFGNGPRELTGAVDLISRYRLLNHHSFFCKKPLPLAISDTHYLQNVVGDTEIRK 330
           Q+  D  FG  P     +  L   YR L   +  C+KP P       Y      D ++ +
Sbjct: 407 QLLEDWNFGVPPPP---SASLQDTYRYLQSQAITCQKPTPPKTPTDPYASLTFWDVDLSE 463

Query: 329 GEGMEIDQ 306
              M++DQ
Sbjct: 464 SFSMDLDQ 471


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,054,590
Number of Sequences: 219361
Number of extensions: 1419002
Number of successful extensions: 2834
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2833
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)