ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TNR6_RAT (Q63199) Tumor necrosis factor receptor superfamily mem... 30 1.6
2GLR_RAT (P30082) Glucagon receptor precursor (GL-R) 28 4.5

>TNR6_RAT (Q63199) Tumor necrosis factor receptor superfamily member 6|
           precursor (FASLG receptor) (Apoptosis-mediating surface
           antigen FAS) (Apo-1 antigen) (CD95 antigen)
          Length = 324

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +1

Query: 19  LQAKHNSQDTLIQTCXMAVHF---ATLCYHYYSYXNEKLDKFQHDCARPGTTKCKTQEGH 189
           L+ + N   T    C    +F   A+LC H Y   +  L+     C R   TKCK Q  +
Sbjct: 109 LEVETNCTRTQNTKCRCKENFYCNASLCDHCYHCTSCGLEDILEPCTRTSNTKCKKQSSN 168



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>GLR_RAT (P30082) Glucagon receptor precursor (GL-R)|
          Length = 485

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 295 WRNPLQDSVEQEDRLSSFDGWERATSSTCYGAP 197
           WR   +    QE+R++S  G   A + TC+G P
Sbjct: 416 WRRWQEGKALQEERMASSHGSHMAPAGTCHGDP 448


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,305,402
Number of Sequences: 219361
Number of extensions: 626754
Number of successful extensions: 1344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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