Clone Name | rbasd14d12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | TNR6_RAT (Q63199) Tumor necrosis factor receptor superfamily mem... | 30 | 1.6 | 2 | GLR_RAT (P30082) Glucagon receptor precursor (GL-R) | 28 | 4.5 |
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>TNR6_RAT (Q63199) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 324 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Frame = +1 Query: 19 LQAKHNSQDTLIQTCXMAVHF---ATLCYHYYSYXNEKLDKFQHDCARPGTTKCKTQEGH 189 L+ + N T C +F A+LC H Y + L+ C R TKCK Q + Sbjct: 109 LEVETNCTRTQNTKCRCKENFYCNASLCDHCYHCTSCGLEDILEPCTRTSNTKCKKQSSN 168
>GLR_RAT (P30082) Glucagon receptor precursor (GL-R)| Length = 485 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -3 Query: 295 WRNPLQDSVEQEDRLSSFDGWERATSSTCYGAP 197 WR + QE+R++S G A + TC+G P Sbjct: 416 WRRWQEGKALQEERMASSHGSHMAPAGTCHGDP 448 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,305,402 Number of Sequences: 219361 Number of extensions: 626754 Number of successful extensions: 1344 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1325 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1344 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)