ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14d09 |
|---|---|
| Clone Library Name | barley_pub |
>RL22B_ARATH (Q9M9W1) 60S ribosomal protein L22-2| Length = 124 Score = 161 bits (407), Expect = 1e-39 Identities = 83/110 (75%), Positives = 91/110 (82%) Frame = -2 Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 240 VSF C+KPV+DKIMEIASLEKFLQERIKV GGKAG LGDSVT+TR+KSK+TVT+DG F Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVTITREKSKITVTADGQF 74 Query: 239 SXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 S KHNVRDWLRVIAANK+RN+YELRYFNIAENEGEEED Sbjct: 75 SKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED 124
>RL22C_ARATH (Q9FE58) 60S ribosomal protein L22-3| Length = 124 Score = 157 bits (397), Expect = 2e-38 Identities = 81/110 (73%), Positives = 90/110 (81%) Frame = -2 Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 240 VSF C+KPV+DKIMEIASLEKFLQERIKV GGKAG LGDSV++TR+KSK+TVT+DG F Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVSITREKSKITVTADGQF 74 Query: 239 SXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 S KHNVRDWLRVIAANK+RN+YELRYFNIAENE EEED Sbjct: 75 SKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEAEEED 124
>RL22A_ARATH (Q9SRX7) 60S ribosomal protein L22-1| Length = 127 Score = 113 bits (282), Expect = 4e-25 Identities = 59/110 (53%), Positives = 77/110 (70%) Frame = -2 Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 240 VSFV C+KPV+D I+EIA+LEKFLQERIKV G KAG LG+SV++TR K+ V ++ F Sbjct: 18 VSFVIDCSKPVDDTILEIATLEKFLQERIKVRG-KAGALGNSVSITRYNGKINVNANSNF 76 Query: 239 SXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 S K+N+RDWLRVIA+NK++NVYE+RYF I + E+ Sbjct: 77 SKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDEVASYEE 126
>RL22_RAT (P47198) 60S ribosomal protein L22| Length = 127 Score = 106 bits (264), Expect = 4e-23 Identities = 61/111 (54%), Positives = 74/111 (66%), Gaps = 1/111 (0%) Frame = -2 Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243 + F CT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEEP 76 Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 FS K+N+RDWLRV+A +KE YELRYF I ++E EEED Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125
>RL22_PIG (P67985) 60S ribosomal protein L22 (Heparin-binding protein HBp15)| Length = 127 Score = 105 bits (263), Expect = 6e-23 Identities = 61/111 (54%), Positives = 74/111 (66%), Gaps = 1/111 (0%) Frame = -2 Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243 + F CT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76 Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 FS K+N+RDWLRV+A +KE YELRYF I ++E EEED Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125
>RL22_MOUSE (P67984) 60S ribosomal protein L22 (Heparin-binding protein HBp15)| Length = 127 Score = 105 bits (263), Expect = 6e-23 Identities = 61/111 (54%), Positives = 74/111 (66%), Gaps = 1/111 (0%) Frame = -2 Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243 + F CT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76 Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 FS K+N+RDWLRV+A +KE YELRYF I ++E EEED Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125
>RL22_HUMAN (P35268) 60S ribosomal protein L22 (Epstein-Barr virus small| RNA-associated protein) (EBER-associated protein) (EAP) (Heparin-binding protein HBp15) Length = 127 Score = 105 bits (263), Expect = 6e-23 Identities = 61/111 (54%), Positives = 74/111 (66%), Gaps = 1/111 (0%) Frame = -2 Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243 + F CT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76 Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 FS K+N+RDWLRV+A +KE YELRYF I ++E EEED Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125
>RL22_TRIGR (P13732) 60S ribosomal protein L22 (Development-specific protein| 217) Length = 130 Score = 104 bits (259), Expect = 2e-22 Identities = 58/111 (52%), Positives = 74/111 (66%) Frame = -2 Query: 422 SVSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGA 243 ++ F CT PVED IM+ ++ E+FLQERIKV GK NL ++ + R KSKVTVTS+ A Sbjct: 22 TLKFTIDCTLPVEDGIMDASNFEQFLQERIKV-NGKTKNLTTNIVIERKKSKVTVTSEIA 80 Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 FS K+N+RDWLRV+AANKE YELRYF I +++ EEED Sbjct: 81 FSKRYLKYLTKKYLKKNNLRDWLRVVAANKES--YELRYFQINQDDEEEED 129
>RL22_XENLA (P50886) 60S ribosomal protein L22| Length = 127 Score = 98.2 bits (243), Expect = 1e-20 Identities = 56/111 (50%), Positives = 72/111 (64%), Gaps = 1/111 (0%) Frame = -2 Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243 + F CT PVED IM+ A+ E+FL +RIKV GK GNLG V ++ R KSK+TV+S+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLHDRIKV-NGKVGNLGGGVVSIERSKSKITVSSEVP 76 Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 FS K+N+RDWLRV+A +KE YELRYF I ++E EEED Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125
>RL22_GADMO (P52865) 60S ribosomal protein L22 (Fragment)| Length = 124 Score = 91.3 bits (225), Expect = 1e-18 Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 1/108 (0%) Frame = -2 Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243 + F CT PVED IM+ A+ E+FLQERIKV GK+GNLG+ V ++ R SK++V S+ Sbjct: 15 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKSGNLGNGVVSIERXXSKISVNSEVP 73 Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGE 99 FS K+N+RDWLRV+A KE YELRYF I ++E E Sbjct: 74 FSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDEEE 119
>RL22_DROME (P50887) 60S ribosomal protein L22| Length = 299 Score = 89.7 bits (221), Expect = 4e-18 Identities = 47/111 (42%), Positives = 69/111 (62%) Frame = -2 Query: 422 SVSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGA 243 S+ F CT ED IM++A EK+++ R+KV GK NLG++VT R K K+ V+SD Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKV-NGKVNNLGNNVTFERSKLKLIVSSDVH 248 Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 FS K+++RDW+RV+A E++ YELRYF I+ N+ E++D Sbjct: 249 FSKAYLKYLTKKYLKKNSLRDWIRVVA--NEKDSYELRYFRISSNDDEDDD 297
>RL22_SCHPO (Q09668) 60S ribosomal protein L22| Length = 117 Score = 82.4 bits (202), Expect = 7e-16 Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Frame = -2 Query: 422 SVSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRD-KSKVTVTSDG 246 S ++ T V DKI ++A+ EK+L +RIKV GK GNLG SV V+R+ SK+ V + Sbjct: 9 SNKYIIDATAAVNDKIFDVAAFEKYLIDRIKV-DGKTGNLGSSVVVSREGSSKIAVIAHI 67 Query: 245 AFSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEE 93 FS KH++RDWLRV++ K VYELRY+N+ EEE Sbjct: 68 DFSGRYLKYLTKKFLKKHSLRDWLRVVSTKK--GVYELRYYNVVVGNDEEE 116
>RL22_CAEEL (P52819) 60S ribosomal protein L22| Length = 130 Score = 79.0 bits (193), Expect = 8e-15 Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 1/109 (0%) Frame = -2 Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLG-DSVTVTRDKSKVTVTSDGA 243 + F C PVED I+ I LE FL E+IKV GK G+L ++V V KSKV+V S+ Sbjct: 21 LKFNVECKNPVEDGILRIEDLEAFLNEKIKV-NGKTGHLAANNVKVEVAKSKVSVVSEVP 79 Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEE 96 FS ++++RDWLRV+A NK N YE+RYF+I N+GE+ Sbjct: 80 FSKRYLKYLTKKYLKRNSLRDWLRVVAVNK--NTYEVRYFHI--NDGED 124
>RL22A_YEAST (P05749) 60S ribosomal protein L22-A (YL31) (RP4)| Length = 120 Score = 68.6 bits (166), Expect = 1e-11 Identities = 39/109 (35%), Positives = 58/109 (53%) Frame = -2 Query: 416 SFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAFS 237 +F + P E+ + + AS K+L + IKV G GNLG++VTVT D + VTV S FS Sbjct: 13 TFTVDVSSPTENGVFDPASYAKYLIDHIKVEGA-VGNLGNAVTVTEDGTVVTVVSTAKFS 71 Query: 236 XXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 K+ +RDW+R ++ + N Y L ++ + E EEED Sbjct: 72 GKYLKYLTKKYLKKNQLRDWIRFVST--KTNEYRLAFYQVTPEEDEEED 118
>RL22B_YEAST (P56628) 60S ribosomal protein L22-B| Length = 121 Score = 61.6 bits (148), Expect = 1e-09 Identities = 34/103 (33%), Positives = 56/103 (54%) Frame = -2 Query: 398 TKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAFSXXXXXX 219 + P E+ + + AS K+L + IKV G GNLG+++ VT D S VTV S FS Sbjct: 19 SSPTENGVFDPASYSKYLIDHIKVDGA-VGNLGNAIEVTEDGSIVTVVSSAKFSGKYLKY 77 Query: 218 XXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90 K+ +RDW+R ++ +N Y+L ++ + + +EE+ Sbjct: 78 LTKKYLKKNQLRDWIRFVSI--RQNQYKLVFYQVTPEDADEEE 118
>SAPC_SHIFL (P0AGH7) Peptide transport system permease protein sapC| Length = 296 Score = 28.9 bits (63), Expect = 9.0 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +1 Query: 319 PPATLMRSWRNFSSDAISMI 378 PP TL +WR F SDA +M+ Sbjct: 12 PPGTLRTAWRKFYSDASAMV 31
>SAPC_ECOLI (P0AGH5) Peptide transport system permease protein sapC| Length = 296 Score = 28.9 bits (63), Expect = 9.0 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +1 Query: 319 PPATLMRSWRNFSSDAISMI 378 PP TL +WR F SDA +M+ Sbjct: 12 PPGTLRTAWRKFYSDASAMV 31
>SAPC_ECOL6 (P0AGH6) Peptide transport system permease protein sapC| Length = 296 Score = 28.9 bits (63), Expect = 9.0 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +1 Query: 319 PPATLMRSWRNFSSDAISMI 378 PP TL +WR F SDA +M+ Sbjct: 12 PPGTLRTAWRKFYSDASAMV 31 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,676,764 Number of Sequences: 219361 Number of extensions: 662915 Number of successful extensions: 2206 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2190 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
