ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL22B_ARATH (Q9M9W1) 60S ribosomal protein L22-2 161 1e-39
2RL22C_ARATH (Q9FE58) 60S ribosomal protein L22-3 157 2e-38
3RL22A_ARATH (Q9SRX7) 60S ribosomal protein L22-1 113 4e-25
4RL22_RAT (P47198) 60S ribosomal protein L22 106 4e-23
5RL22_PIG (P67985) 60S ribosomal protein L22 (Heparin-binding pro... 105 6e-23
6RL22_MOUSE (P67984) 60S ribosomal protein L22 (Heparin-binding p... 105 6e-23
7RL22_HUMAN (P35268) 60S ribosomal protein L22 (Epstein-Barr viru... 105 6e-23
8RL22_TRIGR (P13732) 60S ribosomal protein L22 (Development-speci... 104 2e-22
9RL22_XENLA (P50886) 60S ribosomal protein L22 98 1e-20
10RL22_GADMO (P52865) 60S ribosomal protein L22 (Fragment) 91 1e-18
11RL22_DROME (P50887) 60S ribosomal protein L22 90 4e-18
12RL22_SCHPO (Q09668) 60S ribosomal protein L22 82 7e-16
13RL22_CAEEL (P52819) 60S ribosomal protein L22 79 8e-15
14RL22A_YEAST (P05749) 60S ribosomal protein L22-A (YL31) (RP4) 69 1e-11
15RL22B_YEAST (P56628) 60S ribosomal protein L22-B 62 1e-09
16SAPC_SHIFL (P0AGH7) Peptide transport system permease protein sapC 29 9.0
17SAPC_ECOLI (P0AGH5) Peptide transport system permease protein sapC 29 9.0
18SAPC_ECOL6 (P0AGH6) Peptide transport system permease protein sapC 29 9.0

>RL22B_ARATH (Q9M9W1) 60S ribosomal protein L22-2|
          Length = 124

 Score =  161 bits (407), Expect = 1e-39
 Identities = 83/110 (75%), Positives = 91/110 (82%)
 Frame = -2

Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 240
           VSF   C+KPV+DKIMEIASLEKFLQERIKV GGKAG LGDSVT+TR+KSK+TVT+DG F
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVTITREKSKITVTADGQF 74

Query: 239 SXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
           S             KHNVRDWLRVIAANK+RN+YELRYFNIAENEGEEED
Sbjct: 75  SKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED 124



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>RL22C_ARATH (Q9FE58) 60S ribosomal protein L22-3|
          Length = 124

 Score =  157 bits (397), Expect = 2e-38
 Identities = 81/110 (73%), Positives = 90/110 (81%)
 Frame = -2

Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 240
           VSF   C+KPV+DKIMEIASLEKFLQERIKV GGKAG LGDSV++TR+KSK+TVT+DG F
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVSITREKSKITVTADGQF 74

Query: 239 SXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
           S             KHNVRDWLRVIAANK+RN+YELRYFNIAENE EEED
Sbjct: 75  SKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEAEEED 124



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>RL22A_ARATH (Q9SRX7) 60S ribosomal protein L22-1|
          Length = 127

 Score =  113 bits (282), Expect = 4e-25
 Identities = 59/110 (53%), Positives = 77/110 (70%)
 Frame = -2

Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 240
           VSFV  C+KPV+D I+EIA+LEKFLQERIKV G KAG LG+SV++TR   K+ V ++  F
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRG-KAGALGNSVSITRYNGKINVNANSNF 76

Query: 239 SXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
           S             K+N+RDWLRVIA+NK++NVYE+RYF I +     E+
Sbjct: 77  SKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDEVASYEE 126



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>RL22_RAT (P47198) 60S ribosomal protein L22|
          Length = 127

 Score =  106 bits (264), Expect = 4e-23
 Identities = 61/111 (54%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
 Frame = -2

Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243
           + F   CT PVED IM+ A+ E+FLQERIKV  GKAGNLG  V T+ R KSK+TVTS+  
Sbjct: 18  LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEEP 76

Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
           FS             K+N+RDWLRV+A +KE   YELRYF I ++E EEED
Sbjct: 77  FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125



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>RL22_PIG (P67985) 60S ribosomal protein L22 (Heparin-binding protein HBp15)|
          Length = 127

 Score =  105 bits (263), Expect = 6e-23
 Identities = 61/111 (54%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
 Frame = -2

Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243
           + F   CT PVED IM+ A+ E+FLQERIKV  GKAGNLG  V T+ R KSK+TVTS+  
Sbjct: 18  LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76

Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
           FS             K+N+RDWLRV+A +KE   YELRYF I ++E EEED
Sbjct: 77  FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125



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>RL22_MOUSE (P67984) 60S ribosomal protein L22 (Heparin-binding protein HBp15)|
          Length = 127

 Score =  105 bits (263), Expect = 6e-23
 Identities = 61/111 (54%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
 Frame = -2

Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243
           + F   CT PVED IM+ A+ E+FLQERIKV  GKAGNLG  V T+ R KSK+TVTS+  
Sbjct: 18  LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76

Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
           FS             K+N+RDWLRV+A +KE   YELRYF I ++E EEED
Sbjct: 77  FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125



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>RL22_HUMAN (P35268) 60S ribosomal protein L22 (Epstein-Barr virus small|
           RNA-associated protein) (EBER-associated protein) (EAP)
           (Heparin-binding protein HBp15)
          Length = 127

 Score =  105 bits (263), Expect = 6e-23
 Identities = 61/111 (54%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
 Frame = -2

Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243
           + F   CT PVED IM+ A+ E+FLQERIKV  GKAGNLG  V T+ R KSK+TVTS+  
Sbjct: 18  LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76

Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
           FS             K+N+RDWLRV+A +KE   YELRYF I ++E EEED
Sbjct: 77  FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125



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>RL22_TRIGR (P13732) 60S ribosomal protein L22 (Development-specific protein|
           217)
          Length = 130

 Score =  104 bits (259), Expect = 2e-22
 Identities = 58/111 (52%), Positives = 74/111 (66%)
 Frame = -2

Query: 422 SVSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGA 243
           ++ F   CT PVED IM+ ++ E+FLQERIKV  GK  NL  ++ + R KSKVTVTS+ A
Sbjct: 22  TLKFTIDCTLPVEDGIMDASNFEQFLQERIKV-NGKTKNLTTNIVIERKKSKVTVTSEIA 80

Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
           FS             K+N+RDWLRV+AANKE   YELRYF I +++ EEED
Sbjct: 81  FSKRYLKYLTKKYLKKNNLRDWLRVVAANKES--YELRYFQINQDDEEEED 129



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>RL22_XENLA (P50886) 60S ribosomal protein L22|
          Length = 127

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 56/111 (50%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
 Frame = -2

Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243
           + F   CT PVED IM+ A+ E+FL +RIKV  GK GNLG  V ++ R KSK+TV+S+  
Sbjct: 18  LKFTLDCTHPVEDGIMDAANFEQFLHDRIKV-NGKVGNLGGGVVSIERSKSKITVSSEVP 76

Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
           FS             K+N+RDWLRV+A +KE   YELRYF I ++E EEED
Sbjct: 77  FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125



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>RL22_GADMO (P52865) 60S ribosomal protein L22 (Fragment)|
          Length = 124

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
 Frame = -2

Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 243
           + F   CT PVED IM+ A+ E+FLQERIKV  GK+GNLG+ V ++ R  SK++V S+  
Sbjct: 15  LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKSGNLGNGVVSIERXXSKISVNSEVP 73

Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGE 99
           FS             K+N+RDWLRV+A  KE   YELRYF I ++E E
Sbjct: 74  FSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDEEE 119



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>RL22_DROME (P50887) 60S ribosomal protein L22|
          Length = 299

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 47/111 (42%), Positives = 69/111 (62%)
 Frame = -2

Query: 422 SVSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGA 243
           S+ F   CT   ED IM++A  EK+++ R+KV  GK  NLG++VT  R K K+ V+SD  
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKV-NGKVNNLGNNVTFERSKLKLIVSSDVH 248

Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
           FS             K+++RDW+RV+A   E++ YELRYF I+ N+ E++D
Sbjct: 249 FSKAYLKYLTKKYLKKNSLRDWIRVVA--NEKDSYELRYFRISSNDDEDDD 297



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>RL22_SCHPO (Q09668) 60S ribosomal protein L22|
          Length = 117

 Score = 82.4 bits (202), Expect = 7e-16
 Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
 Frame = -2

Query: 422 SVSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRD-KSKVTVTSDG 246
           S  ++   T  V DKI ++A+ EK+L +RIKV  GK GNLG SV V+R+  SK+ V +  
Sbjct: 9   SNKYIIDATAAVNDKIFDVAAFEKYLIDRIKV-DGKTGNLGSSVVVSREGSSKIAVIAHI 67

Query: 245 AFSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEE 93
            FS             KH++RDWLRV++  K   VYELRY+N+     EEE
Sbjct: 68  DFSGRYLKYLTKKFLKKHSLRDWLRVVSTKK--GVYELRYYNVVVGNDEEE 116



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>RL22_CAEEL (P52819) 60S ribosomal protein L22|
          Length = 130

 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
 Frame = -2

Query: 419 VSFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLG-DSVTVTRDKSKVTVTSDGA 243
           + F   C  PVED I+ I  LE FL E+IKV  GK G+L  ++V V   KSKV+V S+  
Sbjct: 21  LKFNVECKNPVEDGILRIEDLEAFLNEKIKV-NGKTGHLAANNVKVEVAKSKVSVVSEVP 79

Query: 242 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEE 96
           FS             ++++RDWLRV+A NK  N YE+RYF+I  N+GE+
Sbjct: 80  FSKRYLKYLTKKYLKRNSLRDWLRVVAVNK--NTYEVRYFHI--NDGED 124



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>RL22A_YEAST (P05749) 60S ribosomal protein L22-A (YL31) (RP4)|
          Length = 120

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 39/109 (35%), Positives = 58/109 (53%)
 Frame = -2

Query: 416 SFVXXCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAFS 237
           +F    + P E+ + + AS  K+L + IKV G   GNLG++VTVT D + VTV S   FS
Sbjct: 13  TFTVDVSSPTENGVFDPASYAKYLIDHIKVEGA-VGNLGNAVTVTEDGTVVTVVSTAKFS 71

Query: 236 XXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
                        K+ +RDW+R ++   + N Y L ++ +   E EEED
Sbjct: 72  GKYLKYLTKKYLKKNQLRDWIRFVST--KTNEYRLAFYQVTPEEDEEED 118



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>RL22B_YEAST (P56628) 60S ribosomal protein L22-B|
          Length = 121

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 34/103 (33%), Positives = 56/103 (54%)
 Frame = -2

Query: 398 TKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAFSXXXXXX 219
           + P E+ + + AS  K+L + IKV G   GNLG+++ VT D S VTV S   FS      
Sbjct: 19  SSPTENGVFDPASYSKYLIDHIKVDGA-VGNLGNAIEVTEDGSIVTVVSSAKFSGKYLKY 77

Query: 218 XXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 90
                  K+ +RDW+R ++    +N Y+L ++ +   + +EE+
Sbjct: 78  LTKKYLKKNQLRDWIRFVSI--RQNQYKLVFYQVTPEDADEEE 118



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>SAPC_SHIFL (P0AGH7) Peptide transport system permease protein sapC|
          Length = 296

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 319 PPATLMRSWRNFSSDAISMI 378
           PP TL  +WR F SDA +M+
Sbjct: 12  PPGTLRTAWRKFYSDASAMV 31



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>SAPC_ECOLI (P0AGH5) Peptide transport system permease protein sapC|
          Length = 296

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 319 PPATLMRSWRNFSSDAISMI 378
           PP TL  +WR F SDA +M+
Sbjct: 12  PPGTLRTAWRKFYSDASAMV 31



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>SAPC_ECOL6 (P0AGH6) Peptide transport system permease protein sapC|
          Length = 296

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 319 PPATLMRSWRNFSSDAISMI 378
           PP TL  +WR F SDA +M+
Sbjct: 12  PPGTLRTAWRKFYSDASAMV 31


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,676,764
Number of Sequences: 219361
Number of extensions: 662915
Number of successful extensions: 2206
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2190
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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