ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13o07 |
|---|---|
| Clone Library Name | barley_pub |
>G156_PARPR (P13837) G surface protein, allelic form 156 precursor| Length = 2715 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -2 Query: 253 CAAIHSSNLLASGGMSFVRAPVPLSSFSCESACTFLATRXMCVWS 119 C HS+ L++ G V P+ + + E+AC A C W+ Sbjct: 542 CQTYHSTCTLSNSGTGCVPLPLKCEAITIEAACNLKANGQPCGWN 586
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -2 Query: 253 CAAIHSSNLLASGGMSFVRAPVPLSSFSCESACTFLATRXMCVWS 119 C HS+ L++ G V P+ + + E+AC A C W+ Sbjct: 536 CQTYHSTCTLSNSGTGCVPLPLKCEAITIEAACNLKANGQPCGWN 580 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/52 (25%), Positives = 25/52 (48%) Frame = -2 Query: 274 TILYPPACAAIHSSNLLASGGMSFVRAPVPLSSFSCESACTFLATRXMCVWS 119 T+ +C +I + + +GG + +S+S + C F +T CVW+ Sbjct: 745 TLTSHASCYSIFNQCTVNNGGTACQTLATACTSYSTQENCKFTSTNKNCVWT 796
>CAH13_HUMAN (Q8N1Q1) Carbonic anhydrase 13 (EC 4.2.1.1) (Carbonic anhydrase| XIII) (Carbonate dehydratase XIII) (CA-XIII) Length = 262 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 187 GLARARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 G R R+ LHW ++ +GS+H++ G + + HV Sbjct: 87 GSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHV 121
>GBF1_HUMAN (Q92538) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1859 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = -2 Query: 238 SSNLLASGGMSFVRAPVPLSSFSCESA 158 SSNL +GGM F+ P P+SS S E+A Sbjct: 258 SSNL--TGGMPFIDVPTPISSASSEAA 282
>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind)| (L(1)omb) (Protein bifid) Length = 972 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 4/37 (10%) Frame = -2 Query: 334 PVHMPRPILLPVLLIHGLY----CTILYPPACAAIHS 236 P+H P P LLP L HGLY +L+ PA AA S Sbjct: 708 PIH-PSPHLLPYLYPHGLYPPPHLGLLHNPAAAAAMS 743
>CAH13_MOUSE (Q9D6N1) Carbonic anhydrase 13 (EC 4.2.1.1) (Carbonic anhydrase| XIII) (Carbonate dehydratase XIII) (CA-XIII) Length = 262 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 187 GLARARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 G R R+ LHW ++ +GS+H++ G + + HV Sbjct: 87 GNYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHV 121
>CAH3_RAT (P14141) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)| (Carbonate dehydratase III) (CA-III) Length = 259 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 187 GLARARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 G R R+ LHW +S +GS+H + G ++ + H+ Sbjct: 85 GPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 119
>CAH3_MOUSE (P16015) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)| (Carbonate dehydratase III) (CA-III) Length = 259 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 187 GLARARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 G R R+ LHW +S +GS+H + G ++ + H+ Sbjct: 85 GPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 119
>CAH3_HUMAN (P07451) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)| (Carbonate dehydratase III) (CA-III) Length = 259 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 187 GLARARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 G R R+ LHW +S +GS+H + G ++ + H+ Sbjct: 85 GPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 119
>CAH4_RAT (P48284) Carbonic anhydrase 4 precursor (EC 4.2.1.1) (Carbonic| anhydrase IV) (Carbonate dehydratase IV) (CA-IV) Length = 309 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 214 LHWRASSMNGSQHMLGGKEWYSTTHV 291 LHW S GS+H + GK + HV Sbjct: 115 LHWSEESNKGSEHSIDGKHFAMEMHV 140
>CAHZ_BRARE (Q92051) Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)| Length = 260 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +1 Query: 187 GLARARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 G+ R R+ HW +S GS+H + G ++ H+ Sbjct: 86 GIYRLRQFHFHWGSSDDKGSEHTIAGTKFPCELHL 120
>CAH3_PIG (Q5S1S4) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)| (Carbonate dehydratase III) (CA-III) Length = 259 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +1 Query: 196 RARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 R R+ LHW +S +GS+H + G ++ + H+ Sbjct: 88 RLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 119
>CAH3_HORSE (P07450) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)| (Carbonate dehydratase III) (CA-III) Length = 259 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +1 Query: 196 RARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 R R+ LHW +S +GS+H + G ++ + H+ Sbjct: 88 RLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 119
>LYAM1_PONPY (Q95235) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 Query: 259 PACAAIHSSNLLASGGMSFVRAPVPLSSFSCESACTFLAT 140 P C I L A + + PL+SFS SACTF+ + Sbjct: 252 PTCQVIQCEPLSAPD-LGIMNCSHPLASFSFTSACTFICS 290
>LYAM1_PANTR (Q95237) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 Query: 259 PACAAIHSSNLLASGGMSFVRAPVPLSSFSCESACTFLAT 140 P C I L A + + PL+SFS SACTF+ + Sbjct: 252 PTCQVIQCEPLSAPD-LGIMNCSHPLASFSFTSACTFICS 290
>LYAM1_HUMAN (P14151) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte surface antigen Leu-8) (TQ1) (gp90-MEL) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 Query: 259 PACAAIHSSNLLASGGMSFVRAPVPLSSFSCESACTFLAT 140 P C I L A + + PL+SFS SACTF+ + Sbjct: 252 PTCQVIQCEPLSAPD-LGIMNCSHPLASFSFTSACTFICS 290
>CHS6_USTMA (O13395) Chitin synthase 6 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 6) (Class-V chitin synthase 6) Length = 1103 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 152 ILSNKXNVCVVRGTDDCPYDMSNIRLK 72 ++ K N +V GTDD PYD + I LK Sbjct: 859 VVGEKGNKKIVAGTDDEPYDDTMIPLK 885
>KMO_PIG (Q9MZS9) Kynurenine 3-monooxygenase (EC 1.14.13.9) (Kynurenine| 3-hydroxylase) (Fpk) Length = 471 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +2 Query: 8 MHIFYTEAQAVARYSFCPQDLLSVECCSYHRDSH 109 +H+ EA A + Q ++SV+C S+H +SH Sbjct: 265 LHLIGKEALAQDFFRLPAQPMISVKCSSFHFNSH 298
>CAH1_MONDO (Q8HY33) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonic anhydrase I)| (Carbonate dehydratase I) (CA-I) Length = 262 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +1 Query: 187 GLARARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 G R R+ HW + +GS+H + G ++ S H+ Sbjct: 87 GSFRLRQFHFHWGTADDHGSEHTVDGVKYSSELHI 121
>XYNA_THEMA (Q60037) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase| A) (1,4-beta-D-xylan xylanohydrolase A) Length = 1059 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/55 (30%), Positives = 29/55 (52%) Frame = +3 Query: 21 IQKRKQSPDTVSVLKTYFQSNVAHIIGTVICTTDHTHIXLVAKNVHALSHENELK 185 ++ K+ P VLK YF+ VA + D I L+ K+ ++++ ENE+K Sbjct: 361 MEPEKEIPALKEVLKDYFKVGVALPSKVFLNPKD---IELITKHFNSITAENEMK 412
>CAH2_TRIHK (Q8UWA5) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonic anhydrase II)| (Carbonate dehydratase II) (CA-II) Length = 259 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 187 GLARARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 G R ++ HW AS GS+H + GK + + H+ Sbjct: 85 GKYRLKQFHFHWGASDGKGSEHTVDGKCYPAELHL 119
>CAH4_MOUSE (Q64444) Carbonic anhydrase 4 precursor (EC 4.2.1.1) (Carbonic| anhydrase IV) (Carbonate dehydratase IV) (CA-IV) Length = 305 Score = 27.3 bits (59), Expect = 9.7 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = +1 Query: 214 LHWRASSMNGSQHMLGGKEWYSTTHV 291 LHW + NGS+H + G+ + H+ Sbjct: 115 LHWSNGNDNGSEHSIDGRHFAMEMHI 140
>MAUE_METME (Q50231) Methylamine utilization protein mauE| Length = 190 Score = 27.3 bits (59), Expect = 9.7 Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = -2 Query: 241 HSSNLLASGGMSFVRAPVPL--SSFSCESACTFLATRXM 131 H LA GMS A VPL S S ESA T LA+ M Sbjct: 122 HVLRALALAGMSLYVAAVPLEISGISIESALTALASAVM 160
>PNCB_PHOPR (Q6LRA6) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 405 Score = 27.3 bits (59), Expect = 9.7 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 21/91 (23%) Frame = +3 Query: 45 DTVSVLKTY---FQSNVAHIIGTVICTTDHTHIXLV--------AKNVH------ALSHE 173 D ++ LKT F N + TD + L+ +K+VH ++ Sbjct: 146 DAIAQLKTKIERFYLNAKTVDSATQTATDLSQFDLIDFGSRRRFSKDVHHKVVDYLAANV 205 Query: 174 NELKGTG----ARTKDMPPLASKFDEWIAAH 254 E KGT ART+++ P ++ EW AH Sbjct: 206 PEFKGTSNYHLARTRNLTPFGTQAHEWFQAH 236
>LYAM1_PAPHA (Q28768) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -2 Query: 259 PACAAIHSSNLLASGGMSFVRAPVPLSSFSCESACTF 149 P C I L A + + PL+SFS SACTF Sbjct: 252 PTCQVIQCEPLSAPD-LGIMNCSHPLASFSFSSACTF 287
>LYAM1_MACMU (Q95198) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -2 Query: 259 PACAAIHSSNLLASGGMSFVRAPVPLSSFSCESACTF 149 P C I L A + + PL+SFS SACTF Sbjct: 252 PTCQVIQCEPLSAPD-LGIMNCSHPLASFSFSSACTF 287
>CAH9_MOUSE (Q8VHB5) Carbonic anhydrase 9 precursor (EC 4.2.1.1) (Carbonic| anhydrase IX) (Carbonate dehydratase IX) (CA-IX) (CAIX) (Membrane antigen MN homolog) Length = 437 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 196 RARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 RA + LHW S GS+H + G + + HV Sbjct: 200 RALQLHLHWGTSDHPGSEHTVNGHRFPAEIHV 231
>CAH9_HUMAN (Q16790) Carbonic anhydrase 9 precursor (EC 4.2.1.1) (Carbonic| anhydrase IX) (Carbonate dehydratase IX) (CA-IX) (CAIX) (Membrane antigen MN) (P54/58N) (Renal cell carcinoma-associated antigen G250) (RCC-associated antigen G250) (pMW1) Length = 459 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +1 Query: 196 RARKTCLHWRASSMNGSQHMLGGKEWYSTTHV 291 RA + LHW A+ GS+H + G + + HV Sbjct: 221 RALQLHLHWGAAGRPGSEHTVEGHRFPAEIHV 252 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,742,389 Number of Sequences: 219361 Number of extensions: 952017 Number of successful extensions: 2605 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2532 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2603 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
