ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_183719.1| Oryza sativa (japonica cultivar-group), predic... 182 6e-43
2dbj|AK067157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 6e-43
3gb|AY110962.1| Zea mays CL3066_1 mRNA sequence 163 6e-37
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
5dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
6emb|AJ308111.1|LFL308111 Lampetra fluviatilis mRNA for keratin g... 46 0.092
7emb|CR936245.3| Mouse DNA sequence from clone DN-143F13 on chrom... 42 1.4
8gb|AC009459.6| Drosophila melanogaster, chromosome 2R, region 57... 42 1.4
9gb|AC009912.5|AC009912 Drosophila melanogaster, chromosome 2R, r... 42 1.4
10gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62... 42 1.4
11gb|AC165224.9| Mus musculus chromosome 5, clone RP24-389L10, com... 40 5.7
12gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, comp... 40 5.7
13gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.7
14gb|AC068675.17| Homo sapiens chromosome 17, clone RP11-392O1, co... 40 5.7
15gb|AC026591.15| Homo sapiens chromosome 17, clone RP11-655D3, co... 40 5.7
16emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-8... 40 5.7
17gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, co... 40 5.7
18emb|AL590994.13| Mouse DNA sequence from clone RP23-382C19 on ch... 40 5.7 
>ref|NM_183719.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1512

 Score =  182 bits (92), Expect = 6e-43
 Identities = 206/244 (84%)
 Strand = Plus / Minus

                                                                        
Query: 178  tgcagcaagagcagctccggcttctccaccaggcttttccactcgttgcaaaaccttgca 237
            |||||||| ||| | || ||||||||||| |||||||||||||| || || |||||||||
Sbjct: 1502 tgcagcaatagccgttctggcttctccacaaggcttttccactcattacagaaccttgca 1443

                                                                        
Query: 238  accgtggcaccgtcgacgactctgtgatcggctccgacggtcacattgattatcgaggac 297
            || ||||| ||||| || |||| |||||| ||||| || |||||||||||||| ||||| 
Sbjct: 1442 acggtggcgccgtcaacaactcggtgatcagctccaacagtcacattgattattgaggaa 1383

                                                                        
Query: 298  gggtaaacgttttcgtcatcatcaaagcgaggaagcatctgaatgcggccaagagcaatg 357
            || ||||| ||||| ||||||||||||||||||||  | |||||||| || || ||||| 
Sbjct: 1382 ggataaacattttcatcatcatcaaagcgaggaagtttttgaatgcgtccgagtgcaata 1323

                                                                        
Query: 358  atcgcaacctcgggtaggttgagaactggggacccaaacttgccaccgatggcgcctatg 417
            || ||||| || || | ||||||||  || || |||||||||||||| ||||||||||||
Sbjct: 1322 atggcaacttcaggcaagttgagaagcggagagccaaacttgccaccaatggcgcctatg 1263

                
Query: 418  ttgc 421
            ||||
Sbjct: 1262 ttgc 1259
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>dbj|AK067157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E09, full
            insert sequence
          Length = 2003

 Score =  182 bits (92), Expect = 6e-43
 Identities = 206/244 (84%)
 Strand = Plus / Minus

                                                                        
Query: 178  tgcagcaagagcagctccggcttctccaccaggcttttccactcgttgcaaaaccttgca 237
            |||||||| ||| | || ||||||||||| |||||||||||||| || || |||||||||
Sbjct: 1753 tgcagcaatagccgttctggcttctccacaaggcttttccactcattacagaaccttgca 1694

                                                                        
Query: 238  accgtggcaccgtcgacgactctgtgatcggctccgacggtcacattgattatcgaggac 297
            || ||||| ||||| || |||| |||||| ||||| || |||||||||||||| ||||| 
Sbjct: 1693 acggtggcgccgtcaacaactcggtgatcagctccaacagtcacattgattattgaggaa 1634

                                                                        
Query: 298  gggtaaacgttttcgtcatcatcaaagcgaggaagcatctgaatgcggccaagagcaatg 357
            || ||||| ||||| ||||||||||||||||||||  | |||||||| || || ||||| 
Sbjct: 1633 ggataaacattttcatcatcatcaaagcgaggaagtttttgaatgcgtccgagtgcaata 1574

                                                                        
Query: 358  atcgcaacctcgggtaggttgagaactggggacccaaacttgccaccgatggcgcctatg 417
            || ||||| || || | ||||||||  || || |||||||||||||| ||||||||||||
Sbjct: 1573 atggcaacttcaggcaagttgagaagcggagagccaaacttgccaccaatggcgcctatg 1514

                
Query: 418  ttgc 421
            ||||
Sbjct: 1513 ttgc 1510
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>gb|AY110962.1| Zea mays CL3066_1 mRNA sequence
          Length = 1007

 Score =  163 bits (82), Expect = 6e-37
 Identities = 160/186 (86%)
 Strand = Plus / Plus

                                                                       
Query: 232 cttgcaaccgtggcaccgtcgacgactctgtgatcggctccgacggtcacattgattatc 291
           |||||||||| ||| ||||| || |||| |||||||||||| || || ||||||||||| 
Sbjct: 209 cttgcaaccggggccccgtcaacaactcggtgatcggctccaacagtaacattgattatg 268

                                                                       
Query: 292 gaggacgggtaaacgttttcgtcatcatcaaagcgaggaagcatctgaatgcggccaaga 351
           || || ||||||||||||||||||||||| |||||||||||| | ||||| || ||||| 
Sbjct: 269 gatgaagggtaaacgttttcgtcatcatcgaagcgaggaagcttttgaatccgcccaagg 328

                                                                       
Query: 352 gcaatgatcgcaacctcgggtaggttgagaactggggacccaaacttgccaccgatggcg 411
           |||||||| ||||| || |||||||| |||| ||| || |||||||||||||| ||||| 
Sbjct: 329 gcaatgatggcaacttcaggtaggttcagaagtggagagccaaacttgccaccaatggca 388

                 
Query: 412 cctatg 417
           ||||||
Sbjct: 389 cctatg 394
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Plus

                                                                            
Query: 280      acattgattatcgaggacgggtaaacgttttcgtcatcatcaaagcgaggaagcatctga 339
                ||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||  | |||
Sbjct: 11787485 acattgattattgaggaaggataaacattttcatcatcatcaaagcgaggaagtttttga 11787544

                                                                            
Query: 340      atgcggccaagagcaatgatcgcaacctcgggtaggttgagaactggggacccaaacttg 399
                ||||| || || ||||| || ||||| || || | ||||||||  || || |||||||||
Sbjct: 11787545 atgcgtccgagtgcaataatggcaacttcaggcaagttgagaagcggagagccaaacttg 11787604

                                      
Query: 400      ccaccgatggcgcctatgttgc 421
                ||||| ||||||||||||||||
Sbjct: 11787605 ccaccaatggcgcctatgttgc 11787626



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 88/104 (84%)
 Strand = Plus / Plus

                                                                            
Query: 178      tgcagcaagagcagctccggcttctccaccaggcttttccactcgttgcaaaaccttgca 237
                |||||||| ||| | || ||||||||||| |||||||||||||| || || |||||||||
Sbjct: 11787290 tgcagcaatagccgttctggcttctccacaaggcttttccactcattacagaaccttgca 11787349

                                                            
Query: 238      accgtggcaccgtcgacgactctgtgatcggctccgacggtcac 281
                || ||||| ||||| || |||| |||||| ||||| || |||||
Sbjct: 11787350 acggtggcgccgtcaacaactcggtgatcagctccaacagtcac 11787393
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>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1011A07
          Length = 150590

 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Plus

                                                                          
Query: 280    acattgattatcgaggacgggtaaacgttttcgtcatcatcaaagcgaggaagcatctga 339
              ||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||  | |||
Sbjct: 126653 acattgattattgaggaaggataaacattttcatcatcatcaaagcgaggaagtttttga 126712

                                                                          
Query: 340    atgcggccaagagcaatgatcgcaacctcgggtaggttgagaactggggacccaaacttg 399
              ||||| || || ||||| || ||||| || || | ||||||||  || || |||||||||
Sbjct: 126713 atgcgtccgagtgcaataatggcaacttcaggcaagttgagaagcggagagccaaacttg 126772

                                    
Query: 400    ccaccgatggcgcctatgttgc 421
              ||||| ||||||||||||||||
Sbjct: 126773 ccaccaatggcgcctatgttgc 126794



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 88/104 (84%)
 Strand = Plus / Plus

                                                                          
Query: 178    tgcagcaagagcagctccggcttctccaccaggcttttccactcgttgcaaaaccttgca 237
              |||||||| ||| | || ||||||||||| |||||||||||||| || || |||||||||
Sbjct: 126458 tgcagcaatagccgttctggcttctccacaaggcttttccactcattacagaaccttgca 126517

                                                          
Query: 238    accgtggcaccgtcgacgactctgtgatcggctccgacggtcac 281
              || ||||| ||||| || |||| |||||| ||||| || |||||
Sbjct: 126518 acggtggcgccgtcaacaactcggtgatcagctccaacagtcac 126561
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>emb|AJ308111.1|LFL308111 Lampetra fluviatilis mRNA for keratin gamma 2
          Length = 2068

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 187  agcagctccggcttctccaccag 209
            |||||||||||||||||||||||
Sbjct: 1572 agcagctccggcttctccaccag 1594
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>emb|CR936245.3| Mouse DNA sequence from clone DN-143F13 on chromosome 11, complete
            sequence
          Length = 10755

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 126  atggcagagttccctctgcat 146
            |||||||||||||||||||||
Sbjct: 5976 atggcagagttccctctgcat 5996
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>gb|AC009459.6| Drosophila melanogaster, chromosome 2R, region 57E-57F, BAC clone
             BACR34C17, complete sequence
          Length = 167447

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 179   gcagcaagagcagctccggct 199
             |||||||||||||||||||||
Sbjct: 69253 gcagcaagagcagctccggct 69233
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>gb|AC009912.5|AC009912 Drosophila melanogaster, chromosome 2R, region 57F-58A, BAC clone
             BACR46G10, complete sequence
          Length = 165158

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 179   gcagcaagagcagctccggct 199
             |||||||||||||||||||||
Sbjct: 30682 gcagcaagagcagctccggct 30662
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>gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62 of 73 of the complete
              sequence
          Length = 313634

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 179    gcagcaagagcagctccggct 199
              |||||||||||||||||||||
Sbjct: 219789 gcagcaagagcagctccggct 219769
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>gb|AC165224.9| Mus musculus chromosome 5, clone RP24-389L10, complete sequence
          Length = 155046

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 187    agcagctccggcttctccaccagg 210
              |||||||| |||||||||||||||
Sbjct: 109076 agcagctcgggcttctccaccagg 109099
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>gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, complete sequence
          Length = 227245

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    tccggcttctccaccaggct 212
              ||||||||||||||||||||
Sbjct: 206009 tccggcttctccaccaggct 206028
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>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
              complete sequence
          Length = 691920

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 168    tcaccgcgtgtgcagcaagagcag 191
              ||||||||||||||||||| ||||
Sbjct: 399528 tcaccgcgtgtgcagcaagcgcag 399505
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>gb|AC068675.17| Homo sapiens chromosome 17, clone RP11-392O1, complete sequence
          Length = 164611

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    agatggcagagttccctctg 143
              ||||||||||||||||||||
Sbjct: 137933 agatggcagagttccctctg 137914
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>gb|AC026591.15| Homo sapiens chromosome 17, clone RP11-655D3, complete sequence
          Length = 153472

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      atgcacacatatgcacaggg 25
              ||||||||||||||||||||
Sbjct: 109715 atgcacacatatgcacaggg 109696
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>emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-862G15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 210869

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    tccaccaggcttttccactc 221
              ||||||||||||||||||||
Sbjct: 104962 tccaccaggcttttccactc 104981
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>gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, complete sequence
          Length = 170850

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 187    agcagctccggcttctccaccagg 210
              |||||||| |||||||||||||||
Sbjct: 154636 agcagctcgggcttctccaccagg 154613
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>emb|AL590994.13| Mouse DNA sequence from clone RP23-382C19 on chromosome 11, complete
              sequence
          Length = 207814

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    agatggcagagttccctctg 143
              ||||||||||||||||||||
Sbjct: 205391 agatggcagagttccctctg 205410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,894,843
Number of Sequences: 3902068
Number of extensions: 2894843
Number of successful extensions: 59420
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59360
Number of HSP's gapped (non-prelim): 60
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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