ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13n24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAX1A_ORYSA (Q769E5) Vacuolar cation/proton exchanger 1a (Ca(2+)... 171 2e-42
2CAX1B_ORYSA (Q5TKG3) Vacuolar cation/proton exchanger 1b (Ca(2+)... 122 1e-27
3CAX2_ORYSA (Q5KQN0) Vacuolar cation/proton exchanger 2 (Ca(2+)/H... 102 1e-21
4CAX3_ORYSA (Q6K1C4) Vacuolar cation/proton exchanger 3 (Ca(2+)/H... 100 7e-21
5CAX1C_ORYSA (Q5KTQ9) Vacuolar cation/proton exchanger 1c (Ca(2+)... 96 1e-19
6CAX4_ORYSA (Q6YXZ1) Putative vacuolar cation/proton exchanger 4 ... 87 5e-17
7VCX1_YEAST (Q99385) Vacuolar calcium ion transporter (Vacuolar C... 67 6e-11
8SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) ... 36 0.093
9SCAP_HUMAN (Q12770) Sterol regulatory element-binding protein cl... 32 2.3
10PPCK_NEUCR (Q7RVS9) Phosphoenolpyruvate carboxykinase [ATP] (EC ... 31 3.0
11EMP1_RABIT (P54850) Epithelial membrane protein 1 (EMP-1) (Tumor... 31 3.0
12EMP1_PONPY (Q5RCY3) Epithelial membrane protein 1 (EMP-1) 31 3.9
13EMP1_HUMAN (P54849) Epithelial membrane protein 1 (EMP-1) (Tumor... 31 3.9
14YN61_YEAST (P42839) Protein YNL321W 30 5.1
15PPCK_KLULA (O43112) Phosphoenolpyruvate carboxykinase [ATP] (EC ... 30 6.7
16CHRD_XENLA (Q91713) Chordin precursor (Organizer-specific secret... 30 6.7
17BSH_DROME (Q04787) Brain-specific homeobox protein 30 8.7
18DCNP1_HUMAN (Q8TF63) Dendritic cell nuclear protein 1 30 8.7

>CAX1A_ORYSA (Q769E5) Vacuolar cation/proton exchanger 1a (Ca(2+)/H(+) exchanger|
           1a) (OsCAX1a)
          Length = 451

 Score =  171 bits (433), Expect = 2e-42
 Identities = 85/99 (85%), Positives = 89/99 (89%)
 Frame = -2

Query: 673 ATQISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLL 494
           ATQISMFVVPLSVLVAWIMG+QMDLDFKLLETGSLF++VLVTAFTLQDGTSHYLKG+LLL
Sbjct: 353 ATQISMFVVPLSVLVAWIMGVQMDLDFKLLETGSLFMAVLVTAFTLQDGTSHYLKGILLL 412

Query: 493 LCYIVIGACFFVTRQTEHHANGNGTLLDVPMGPMIVQVA 377
           LCYIVIGACFFV RQ   HAN NG LLDVP G M VQ A
Sbjct: 413 LCYIVIGACFFVARQPAGHANSNGALLDVPTGSMSVQAA 451



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>CAX1B_ORYSA (Q5TKG3) Vacuolar cation/proton exchanger 1b (Ca(2+)/H(+) exchanger|
           1b) (OsCAX1b)
          Length = 453

 Score =  122 bits (305), Expect = 1e-27
 Identities = 57/75 (76%), Positives = 67/75 (89%)
 Frame = -2

Query: 673 ATQISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLL 494
           ATQISMFVVP+SV+VAW MGI MDLDF LLETGSLF+++LVTAFTLQ+G SHYLKG++L+
Sbjct: 363 ATQISMFVVPVSVIVAWTMGIPMDLDFNLLETGSLFLAILVTAFTLQEGESHYLKGLILV 422

Query: 493 LCYIVIGACFFVTRQ 449
           LCY VI  CFFV R+
Sbjct: 423 LCYAVISVCFFVIRR 437



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>CAX2_ORYSA (Q5KQN0) Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) exchanger|
           2) (OsCAX2)
          Length = 437

 Score =  102 bits (254), Expect = 1e-21
 Identities = 45/72 (62%), Positives = 61/72 (84%)
 Frame = -2

Query: 673 ATQISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLL 494
           +TQISMFV+P  V++ WIMG QMDL+F+L ET +LFI+VLV AF LQ+GTS+Y KG++L+
Sbjct: 356 STQISMFVIPFCVVIGWIMGQQMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLI 415

Query: 493 LCYIVIGACFFV 458
           LCY+++ A FFV
Sbjct: 416 LCYLIVAASFFV 427



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>CAX3_ORYSA (Q6K1C4) Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger|
           3) (OsCAX3)
          Length = 417

 Score = 99.8 bits (247), Expect = 7e-21
 Identities = 43/72 (59%), Positives = 61/72 (84%)
 Frame = -2

Query: 673 ATQISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLL 494
           +TQISMFV+P  V++ W+MG +MDL+F+L ET +LFI+VLV AF LQDG ++YLKG++L+
Sbjct: 337 STQISMFVIPFCVVIGWMMGQKMDLNFQLFETATLFITVLVVAFMLQDGVANYLKGLMLI 396

Query: 493 LCYIVIGACFFV 458
           LCY+++ A FFV
Sbjct: 397 LCYLIVAASFFV 408



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>CAX1C_ORYSA (Q5KTQ9) Vacuolar cation/proton exchanger 1c (Ca(2+)/H(+) exchanger|
           1c) (OsCAX1c)
          Length = 450

 Score = 95.5 bits (236), Expect = 1e-19
 Identities = 46/74 (62%), Positives = 57/74 (77%)
 Frame = -2

Query: 673 ATQISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLL 494
           ATQISM VVP+ ++V+W+  I MDLDF LLETGSL ++V+ TAFTLQD   HYLKG+ L+
Sbjct: 367 ATQISMLVVPVILIVSWVNAIPMDLDFNLLETGSLAMAVITTAFTLQDDKWHYLKGLNLV 426

Query: 493 LCYIVIGACFFVTR 452
             YIVI  CFFV +
Sbjct: 427 FSYIVIAVCFFVMK 440



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>CAX4_ORYSA (Q6YXZ1) Putative vacuolar cation/proton exchanger 4 (Ca(2+)/H(+)|
           exchanger 4) (OsCAX4)
          Length = 447

 Score = 87.0 bits (214), Expect = 5e-17
 Identities = 43/88 (48%), Positives = 59/88 (67%)
 Frame = -2

Query: 667 QISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLLLC 488
           QISMF +P  V++ W+MG  MDL+F L ET SL  +VLV AF LQDGTS+ +KG++L LC
Sbjct: 363 QISMFGIPFCVVMGWMMGKPMDLNFHLFETASLLTTVLVVAFLLQDGTSNCVKGLMLFLC 422

Query: 487 YIVIGACFFVTRQTEHHANGNGTLLDVP 404
           Y+++ A F+V      HA+ N    + P
Sbjct: 423 YLIVAASFYV------HADPNSKASEKP 444



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>VCX1_YEAST (Q99385) Vacuolar calcium ion transporter (Vacuolar Ca(2+)/H(+)|
           exchanger) (High copy number undoes manganese protein 1)
           (Manganese resistance 1 protein)
          Length = 411

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 29/69 (42%), Positives = 47/69 (68%)
 Frame = -2

Query: 667 QISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLLLC 488
           Q+++FV P  VLV W++ + M L+F   ET +LFI+V ++ + + DG S++L+GV+ L  
Sbjct: 328 QVALFVTPFMVLVGWMIDVPMTLNFSTFETATLFIAVFLSNYLILDGESNWLEGVMSLAM 387

Query: 487 YIVIGACFF 461
           YI+I   FF
Sbjct: 388 YILIAMAFF 396



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>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus)
           (Mammalian branch point-binding protein mBBP) (BBP)
           (CW17)
          Length = 653

 Score = 36.2 bits (82), Expect = 0.093
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = -1

Query: 539 PPGWNVTLPQGSPPPP--MLHCYRRLL-----LCYETNRTSRERQRHAAGCPNGSHDCP 384
           PPG    LP G+PPPP   + C   LL     LC   NR +R   R + G  + S D P
Sbjct: 570 PPGVQPPLPPGAPPPPTCSIECLLCLLSSPNSLCLSPNRAARIPPRGSDGPSHESEDFP 628



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>SCAP_HUMAN (Q12770) Sterol regulatory element-binding protein|
            cleavage-activating protein (SREBP cleavage-activating
            protein) (SCAP)
          Length = 1278

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
 Frame = -1

Query: 629  RLDHGDSDGSRLQAARDRLSLHLGASDGLHPPGWNVTL---PQGSPPPPMLHCYRRLLLC 459
            R D G   G   Q + +RLS   G   G   PG +  L   P+G PPP +      L   
Sbjct: 818  RRDSGVGSGLEAQESWERLSD--GGKAGPEEPGDSPPLRHRPRGPPPPSLFGDQPDLTCL 875

Query: 458  YETNRTSRERQ--------RHAAGCPNGSHDCPG 381
             +TN +++ R         RH A C   S D PG
Sbjct: 876  IDTNFSAQPRSSQPTQPEPRHRAVC-GRSRDSPG 908



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>PPCK_NEUCR (Q7RVS9) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)|
          Length = 561

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
 Frame = -2

Query: 328 IENEVFEPEATKLCLSYMCIT-----------VPRKRIPCVQSPHPKELVDYCCE 197
           +EN VF PE  ++      +T           +P  +IPC+   HPK ++   C+
Sbjct: 325 LENVVFNPETREVDYGDATLTENTRCAYPIEYIPNAKIPCLSPNHPKNIILLTCD 379



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>EMP1_RABIT (P54850) Epithelial membrane protein 1 (EMP-1) (Tumor-associated|
           membrane protein) (Squamous cell-specific protein CL-20)
          Length = 160

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 544 FTLQDGTSHYLKGVLLLLCY--IVIGACFFVTRQTEHHANGNGTLLD 410
           FT++ G   +L G  +L+C+  ++IGA  +    T  +ANG+    D
Sbjct: 87  FTMEKGNRFFLSGATMLVCWLCVLIGASIY----THRYANGDSNTFD 129



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>EMP1_PONPY (Q5RCY3) Epithelial membrane protein 1 (EMP-1)|
          Length = 157

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 544 FTLQDGTSHYLKGVLLLLCYIVIGACFFVTRQTEHHANGNGT 419
           FT++ G   +L G   L+C++ I     V+  T H+AN +GT
Sbjct: 87  FTMEKGNRFFLSGATTLVCWLCI--LVGVSIYTSHYANRDGT 126



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>EMP1_HUMAN (P54849) Epithelial membrane protein 1 (EMP-1) (Tumor-associated|
           membrane protein) (CL-20) (B4B protein)
          Length = 157

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 544 FTLQDGTSHYLKGVLLLLCYIVIGACFFVTRQTEHHANGNGT 419
           FT++ G   +L G   L+C++ I     V+  T H+AN +GT
Sbjct: 87  FTMEKGNRFFLSGATTLVCWLCI--LVGVSIYTSHYANRDGT 126



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>YN61_YEAST (P42839) Protein YNL321W|
          Length = 908

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 562 SVLVTAFTLQDGTSHYLKGVLLLLCYIVIGACFF 461
           SV +  +   +G S+Y KG +L+L YI+I   F+
Sbjct: 868 SVFMFTYLYAEGKSNYFKGSMLILLYIIIVVGFY 901



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>PPCK_KLULA (O43112) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)|
          Length = 543

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
 Frame = -2

Query: 328 IENEVFEPEATKLCLSYMCIT-----------VPRKRIPCVQSPHPKELVDYCCEKS 191
           +EN +++P   ++      IT           +P  +IPC+   HPK +V   C+ S
Sbjct: 306 LENIIYDPNTREVDYEDSTITENTRCAYPIEYIPSAKIPCLADHHPKNIVLLTCDAS 362



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>CHRD_XENLA (Q91713) Chordin precursor (Organizer-specific secreted dorsalizing|
           factor)
          Length = 941

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 515 PQGSPPPPMLHCYRRLLLCY-ETNRTSRERQRHAAGCPNGSHDCP 384
           P    P  ++HC    +LCY E  R+ R +      C N  HDCP
Sbjct: 58  PDLGEPFGVMHC----VLCYCEPQRSRRGKPSGKVSCKNIKHDCP 98



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>BSH_DROME (Q04787) Brain-specific homeobox protein|
          Length = 427

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 581 DRLSLHLGASDGLHPPGWNVTLPQGSPPPPM 489
           D++S  LG+    HPP    T PQ  PPPP+
Sbjct: 161 DQISQQLGSGAAQHPPV-PTTQPQPPPPPPL 190



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>DCNP1_HUMAN (Q8TF63) Dendritic cell nuclear protein 1|
          Length = 244

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 560 GASDGLHPPGWNVTLPQG 507
           G S+GL+PPG N TLP G
Sbjct: 62  GLSEGLYPPGRNKTLPAG 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,073,022
Number of Sequences: 219361
Number of extensions: 2047150
Number of successful extensions: 5336
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5326
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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