Clone Name | rbasd13n24 |
---|---|
Clone Library Name | barley_pub |
>CAX1A_ORYSA (Q769E5) Vacuolar cation/proton exchanger 1a (Ca(2+)/H(+) exchanger| 1a) (OsCAX1a) Length = 451 Score = 171 bits (433), Expect = 2e-42 Identities = 85/99 (85%), Positives = 89/99 (89%) Frame = -2 Query: 673 ATQISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLL 494 ATQISMFVVPLSVLVAWIMG+QMDLDFKLLETGSLF++VLVTAFTLQDGTSHYLKG+LLL Sbjct: 353 ATQISMFVVPLSVLVAWIMGVQMDLDFKLLETGSLFMAVLVTAFTLQDGTSHYLKGILLL 412 Query: 493 LCYIVIGACFFVTRQTEHHANGNGTLLDVPMGPMIVQVA 377 LCYIVIGACFFV RQ HAN NG LLDVP G M VQ A Sbjct: 413 LCYIVIGACFFVARQPAGHANSNGALLDVPTGSMSVQAA 451
>CAX1B_ORYSA (Q5TKG3) Vacuolar cation/proton exchanger 1b (Ca(2+)/H(+) exchanger| 1b) (OsCAX1b) Length = 453 Score = 122 bits (305), Expect = 1e-27 Identities = 57/75 (76%), Positives = 67/75 (89%) Frame = -2 Query: 673 ATQISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLL 494 ATQISMFVVP+SV+VAW MGI MDLDF LLETGSLF+++LVTAFTLQ+G SHYLKG++L+ Sbjct: 363 ATQISMFVVPVSVIVAWTMGIPMDLDFNLLETGSLFLAILVTAFTLQEGESHYLKGLILV 422 Query: 493 LCYIVIGACFFVTRQ 449 LCY VI CFFV R+ Sbjct: 423 LCYAVISVCFFVIRR 437
>CAX2_ORYSA (Q5KQN0) Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) exchanger| 2) (OsCAX2) Length = 437 Score = 102 bits (254), Expect = 1e-21 Identities = 45/72 (62%), Positives = 61/72 (84%) Frame = -2 Query: 673 ATQISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLL 494 +TQISMFV+P V++ WIMG QMDL+F+L ET +LFI+VLV AF LQ+GTS+Y KG++L+ Sbjct: 356 STQISMFVIPFCVVIGWIMGQQMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLI 415 Query: 493 LCYIVIGACFFV 458 LCY+++ A FFV Sbjct: 416 LCYLIVAASFFV 427
>CAX3_ORYSA (Q6K1C4) Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger| 3) (OsCAX3) Length = 417 Score = 99.8 bits (247), Expect = 7e-21 Identities = 43/72 (59%), Positives = 61/72 (84%) Frame = -2 Query: 673 ATQISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLL 494 +TQISMFV+P V++ W+MG +MDL+F+L ET +LFI+VLV AF LQDG ++YLKG++L+ Sbjct: 337 STQISMFVIPFCVVIGWMMGQKMDLNFQLFETATLFITVLVVAFMLQDGVANYLKGLMLI 396 Query: 493 LCYIVIGACFFV 458 LCY+++ A FFV Sbjct: 397 LCYLIVAASFFV 408
>CAX1C_ORYSA (Q5KTQ9) Vacuolar cation/proton exchanger 1c (Ca(2+)/H(+) exchanger| 1c) (OsCAX1c) Length = 450 Score = 95.5 bits (236), Expect = 1e-19 Identities = 46/74 (62%), Positives = 57/74 (77%) Frame = -2 Query: 673 ATQISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLL 494 ATQISM VVP+ ++V+W+ I MDLDF LLETGSL ++V+ TAFTLQD HYLKG+ L+ Sbjct: 367 ATQISMLVVPVILIVSWVNAIPMDLDFNLLETGSLAMAVITTAFTLQDDKWHYLKGLNLV 426 Query: 493 LCYIVIGACFFVTR 452 YIVI CFFV + Sbjct: 427 FSYIVIAVCFFVMK 440
>CAX4_ORYSA (Q6YXZ1) Putative vacuolar cation/proton exchanger 4 (Ca(2+)/H(+)| exchanger 4) (OsCAX4) Length = 447 Score = 87.0 bits (214), Expect = 5e-17 Identities = 43/88 (48%), Positives = 59/88 (67%) Frame = -2 Query: 667 QISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLLLC 488 QISMF +P V++ W+MG MDL+F L ET SL +VLV AF LQDGTS+ +KG++L LC Sbjct: 363 QISMFGIPFCVVMGWMMGKPMDLNFHLFETASLLTTVLVVAFLLQDGTSNCVKGLMLFLC 422 Query: 487 YIVIGACFFVTRQTEHHANGNGTLLDVP 404 Y+++ A F+V HA+ N + P Sbjct: 423 YLIVAASFYV------HADPNSKASEKP 444
>VCX1_YEAST (Q99385) Vacuolar calcium ion transporter (Vacuolar Ca(2+)/H(+)| exchanger) (High copy number undoes manganese protein 1) (Manganese resistance 1 protein) Length = 411 Score = 66.6 bits (161), Expect = 6e-11 Identities = 29/69 (42%), Positives = 47/69 (68%) Frame = -2 Query: 667 QISMFVVPLSVLVAWIMGIQMDLDFKLLETGSLFISVLVTAFTLQDGTSHYLKGVLLLLC 488 Q+++FV P VLV W++ + M L+F ET +LFI+V ++ + + DG S++L+GV+ L Sbjct: 328 QVALFVTPFMVLVGWMIDVPMTLNFSTFETATLFIAVFLSNYLILDGESNWLEGVMSLAM 387 Query: 487 YIVIGACFF 461 YI+I FF Sbjct: 388 YILIAMAFF 396
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 36.2 bits (82), Expect = 0.093 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = -1 Query: 539 PPGWNVTLPQGSPPPP--MLHCYRRLL-----LCYETNRTSRERQRHAAGCPNGSHDCP 384 PPG LP G+PPPP + C LL LC NR +R R + G + S D P Sbjct: 570 PPGVQPPLPPGAPPPPTCSIECLLCLLSSPNSLCLSPNRAARIPPRGSDGPSHESEDFP 628
>SCAP_HUMAN (Q12770) Sterol regulatory element-binding protein| cleavage-activating protein (SREBP cleavage-activating protein) (SCAP) Length = 1278 Score = 31.6 bits (70), Expect = 2.3 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 11/94 (11%) Frame = -1 Query: 629 RLDHGDSDGSRLQAARDRLSLHLGASDGLHPPGWNVTL---PQGSPPPPMLHCYRRLLLC 459 R D G G Q + +RLS G G PG + L P+G PPP + L Sbjct: 818 RRDSGVGSGLEAQESWERLSD--GGKAGPEEPGDSPPLRHRPRGPPPPSLFGDQPDLTCL 875 Query: 458 YETNRTSRERQ--------RHAAGCPNGSHDCPG 381 +TN +++ R RH A C S D PG Sbjct: 876 IDTNFSAQPRSSQPTQPEPRHRAVC-GRSRDSPG 908
>PPCK_NEUCR (Q7RVS9) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)| Length = 561 Score = 31.2 bits (69), Expect = 3.0 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 11/55 (20%) Frame = -2 Query: 328 IENEVFEPEATKLCLSYMCIT-----------VPRKRIPCVQSPHPKELVDYCCE 197 +EN VF PE ++ +T +P +IPC+ HPK ++ C+ Sbjct: 325 LENVVFNPETREVDYGDATLTENTRCAYPIEYIPNAKIPCLSPNHPKNIILLTCD 379
>EMP1_RABIT (P54850) Epithelial membrane protein 1 (EMP-1) (Tumor-associated| membrane protein) (Squamous cell-specific protein CL-20) Length = 160 Score = 31.2 bits (69), Expect = 3.0 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = -2 Query: 544 FTLQDGTSHYLKGVLLLLCY--IVIGACFFVTRQTEHHANGNGTLLD 410 FT++ G +L G +L+C+ ++IGA + T +ANG+ D Sbjct: 87 FTMEKGNRFFLSGATMLVCWLCVLIGASIY----THRYANGDSNTFD 129
>EMP1_PONPY (Q5RCY3) Epithelial membrane protein 1 (EMP-1)| Length = 157 Score = 30.8 bits (68), Expect = 3.9 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 544 FTLQDGTSHYLKGVLLLLCYIVIGACFFVTRQTEHHANGNGT 419 FT++ G +L G L+C++ I V+ T H+AN +GT Sbjct: 87 FTMEKGNRFFLSGATTLVCWLCI--LVGVSIYTSHYANRDGT 126
>EMP1_HUMAN (P54849) Epithelial membrane protein 1 (EMP-1) (Tumor-associated| membrane protein) (CL-20) (B4B protein) Length = 157 Score = 30.8 bits (68), Expect = 3.9 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 544 FTLQDGTSHYLKGVLLLLCYIVIGACFFVTRQTEHHANGNGT 419 FT++ G +L G L+C++ I V+ T H+AN +GT Sbjct: 87 FTMEKGNRFFLSGATTLVCWLCI--LVGVSIYTSHYANRDGT 126
>YN61_YEAST (P42839) Protein YNL321W| Length = 908 Score = 30.4 bits (67), Expect = 5.1 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 562 SVLVTAFTLQDGTSHYLKGVLLLLCYIVIGACFF 461 SV + + +G S+Y KG +L+L YI+I F+ Sbjct: 868 SVFMFTYLYAEGKSNYFKGSMLILLYIIIVVGFY 901
>PPCK_KLULA (O43112) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)| Length = 543 Score = 30.0 bits (66), Expect = 6.7 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 11/57 (19%) Frame = -2 Query: 328 IENEVFEPEATKLCLSYMCIT-----------VPRKRIPCVQSPHPKELVDYCCEKS 191 +EN +++P ++ IT +P +IPC+ HPK +V C+ S Sbjct: 306 LENIIYDPNTREVDYEDSTITENTRCAYPIEYIPSAKIPCLADHHPKNIVLLTCDAS 362
>CHRD_XENLA (Q91713) Chordin precursor (Organizer-specific secreted dorsalizing| factor) Length = 941 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -1 Query: 515 PQGSPPPPMLHCYRRLLLCY-ETNRTSRERQRHAAGCPNGSHDCP 384 P P ++HC +LCY E R+ R + C N HDCP Sbjct: 58 PDLGEPFGVMHC----VLCYCEPQRSRRGKPSGKVSCKNIKHDCP 98
>BSH_DROME (Q04787) Brain-specific homeobox protein| Length = 427 Score = 29.6 bits (65), Expect = 8.7 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -1 Query: 581 DRLSLHLGASDGLHPPGWNVTLPQGSPPPPM 489 D++S LG+ HPP T PQ PPPP+ Sbjct: 161 DQISQQLGSGAAQHPPV-PTTQPQPPPPPPL 190
>DCNP1_HUMAN (Q8TF63) Dendritic cell nuclear protein 1| Length = 244 Score = 29.6 bits (65), Expect = 8.7 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -1 Query: 560 GASDGLHPPGWNVTLPQG 507 G S+GL+PPG N TLP G Sbjct: 62 GLSEGLYPPGRNKTLPAG 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,073,022 Number of Sequences: 219361 Number of extensions: 2047150 Number of successful extensions: 5336 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5043 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5326 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)