ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14c23 |
|---|---|
| Clone Library Name | barley_pub |
>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 126 bits (317), Expect(3) = 1e-45 Identities = 66/96 (68%), Positives = 72/96 (75%) Frame = -1 Query: 526 SYSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQAXXXX 347 SYSRFFAVGLFRLLEL+NATEPT+LDKLCAALNINK+SVDRDLDVYRN+LSKLVQA Sbjct: 192 SYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELL 251 Query: 346 XXXXXXXXXXXXXXXETPKPNEAVAKFDGSTYPLKH 239 ETPK NEAV KFDGS ++H Sbjct: 252 KEYVEREKKKREERSETPKSNEAVTKFDGSLNSMRH 287 Score = 61.2 bits (147), Expect(3) = 1e-45 Identities = 29/33 (87%), Positives = 32/33 (96%) Frame = -3 Query: 626 QNGNLLVEFSSRDGEIESILKDISERAQGKGNF 528 QNGN LVEFSS+DGEIE+ILKDISERAQGKG+F Sbjct: 159 QNGNSLVEFSSKDGEIEAILKDISERAQGKGSF 191 Score = 36.2 bits (82), Expect(3) = 1e-45 Identities = 15/16 (93%), Positives = 16/16 (100%) Frame = -2 Query: 675 EQYRADAQRMEEWARS 628 EQYRADAQ+MEEWARS Sbjct: 143 EQYRADAQKMEEWARS 158
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 110 bits (274), Expect(3) = 2e-32 Identities = 59/95 (62%), Positives = 68/95 (71%) Frame = -1 Query: 538 RETSSYSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 359 +E SYSRFFAVGLFRLLEL++AT+PTVLDKLCA+LNINKKSVDRDLDVYRNLLSKLVQA Sbjct: 194 KEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQA 253 Query: 358 XXXXXXXXXXXXXXXXXXXETPKPNEAVAKFDGST 254 ++ K NE ++K G T Sbjct: 254 KELLKEYVEREKKKQGERAQSQKANETISKCLGDT 288 Score = 37.0 bits (84), Expect(3) = 2e-32 Identities = 17/33 (51%), Positives = 24/33 (72%) Frame = -3 Query: 626 QNGNLLVEFSSRDGEIESILKDISERAQGKGNF 528 Q LV+FSS++G+IE++LKDI+ RA K F Sbjct: 165 QTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGF 197 Score = 32.7 bits (73), Expect(3) = 2e-32 Identities = 13/16 (81%), Positives = 15/16 (93%) Frame = -2 Query: 675 EQYRADAQRMEEWARS 628 +QYR DAQ+MEEWARS Sbjct: 149 KQYRIDAQKMEEWARS 164
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 100 bits (249), Expect(3) = 4e-32 Identities = 48/55 (87%), Positives = 53/55 (96%) Frame = -1 Query: 523 YSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 359 YSR FAVGLFRLLEL+N T+PT+L+KLCAALN+NKKSVDRDLDVYRNLLSKLVQA Sbjct: 200 YSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQA 254 Score = 43.9 bits (102), Expect(3) = 4e-32 Identities = 20/33 (60%), Positives = 26/33 (78%) Frame = -3 Query: 626 QNGNLLVEFSSRDGEIESILKDISERAQGKGNF 528 QN N LV+FSS++GEIE+I KDI++RA K F Sbjct: 166 QNANTLVDFSSKEGEIENIFKDIAQRAGTKDGF 198 Score = 33.9 bits (76), Expect(3) = 4e-32 Identities = 13/16 (81%), Positives = 16/16 (100%) Frame = -2 Query: 675 EQYRADAQRMEEWARS 628 EQYRADAQ++EEWAR+ Sbjct: 150 EQYRADAQKLEEWART 165
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%) Frame = -1 Query: 523 YSRFFAVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLV 365 YSR FA+GLF LLE SN L + A L+++ + +DL++YR+ L K+ Sbjct: 141 YSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRSNLDKMT 200 Query: 364 QA 359 QA Sbjct: 201 QA 202
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 7/62 (11%) Frame = -1 Query: 523 YSRFFAVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLV 365 YSR FA+GLF LLE SN L + A L+++ +DL++YR+ L K+ Sbjct: 141 YSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRSNLDKMT 200 Query: 364 QA 359 QA Sbjct: 201 QA 202
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 38.9 bits (89), Expect = 0.014 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Frame = -1 Query: 541 VRETSSYSRFFAVGLFRLLELSNATEPTV-----LDKLCAALNINKKSVDRDLDVYRNLL 377 + T YSR AVGL+ L+ A E T+ LD+L + + + V RDL++YR+ L Sbjct: 125 LNHTGKYSRLHAVGLYAFLQ-ELAGEVTIHLNETLDQLAPVIPLPIEKVKRDLELYRSNL 183 Query: 376 SKLVQA 359 K+ QA Sbjct: 184 DKINQA 189
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 38.9 bits (89), Expect = 0.014 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 7/67 (10%) Frame = -1 Query: 538 RETSSYSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNL 380 R YSR FA+GLF LLE + +P L A+ ++ + +DLD+YR+ Sbjct: 137 RSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSN 196 Query: 379 LSKLVQA 359 L K+ QA Sbjct: 197 LEKMEQA 203
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 38.9 bits (89), Expect = 0.014 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 7/67 (10%) Frame = -1 Query: 538 RETSSYSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNL 380 R YSR FA+GLF LLE + +P L A+ ++ + +DLD+YR+ Sbjct: 137 RSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSN 196 Query: 379 LSKLVQA 359 L K+ QA Sbjct: 197 LEKMEQA 203
>THF1_PROMM (Q7V7R3) Protein thf1| Length = 243 Score = 37.0 bits (84), Expect = 0.055 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Frame = -1 Query: 532 TSSYSRFFAVGLFRLLELSNATEPT-------VLDKLCAALNINKKSVDRDLDVYRNLLS 374 T YSR AVGL LL + E + + +L ++ +K V++DL++Y++ L Sbjct: 137 TFHYSRLMAVGLLSLLASAQGDESSDPEKLSQIAHELSESVGFSKARVEKDLNLYKSNLE 196 Query: 373 KLVQA 359 K+ QA Sbjct: 197 KMAQA 201
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 36.2 bits (82), Expect = 0.093 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Frame = -1 Query: 550 GPRVRETSSYSRFFAVGLFRLL-----ELSNATEPT--VLDKLCAALNINKKSVDRDLDV 392 G R YSR FA+GL+ LL E+ + E L +L L+++ V +DLD+ Sbjct: 131 GIHQRHKFKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTRLSELLDLSLDKVVKDLDL 190 Query: 391 YRNLLSKLVQ 362 YR+ L K+ Q Sbjct: 191 YRSNLEKVDQ 200
>THF1_GLOVI (Q7NKS7) Protein thf1| Length = 228 Score = 34.7 bits (78), Expect = 0.27 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 7/63 (11%) Frame = -1 Query: 535 ETSSYSRFFAVGLFRLLE-------LSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLL 377 E YSR F++GL +LE +S L ++C L ++ V RDLD + ++L Sbjct: 139 ERFKYSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYLKLDYNRVKRDLDFFHSVL 198 Query: 376 SKL 368 ++ Sbjct: 199 ERI 201
>THF1_SYNS9 (Q3AY05) Protein thf1| Length = 215 Score = 33.9 bits (76), Expect = 0.46 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%) Frame = -1 Query: 550 GPRVRETSSYSRFFAVGLFRLLE--LSNATEPTVLD------KLCAALNINKKSVDRDLD 395 G ++ E S YSR A+G+ RL E +A +P D +L ALN + V++DL Sbjct: 116 GQKLGEGSHYSRLMAIGVLRLFEEAKGDADQPDEADLRKRCKELSTALNFPAERVEKDLS 175 Query: 394 VY 389 ++ Sbjct: 176 LF 177
>THF1_PROMA (Q7VC23) Protein thf1| Length = 214 Score = 33.5 bits (75), Expect = 0.60 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = -1 Query: 523 YSRFFAVGLFRLLELSN-----ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKL 368 YSR A+G++ L+ N + ++ + AL +K V++D++ Y+N + K+ Sbjct: 137 YSRLHAIGIYELISNINEDKKEGDDKEIISECVEALGFSKDRVEKDINQYKNSMEKI 193
>THF1_SYNJB (P0C1D1) Protein thf1| Length = 239 Score = 31.2 bits (69), Expect = 3.0 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%) Frame = -1 Query: 526 SYSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLSK 371 +YSR AVGL+ E+ S EP L+ + + L + + V +DL++YR+ L + Sbjct: 139 AYSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKLPFSTERVRKDLELYRSSLDR 198 Query: 370 LVQA 359 + QA Sbjct: 199 MKQA 202
>GFAP_HUMAN (P14136) Glial fibrillary acidic protein, astrocyte (GFAP)| Length = 432 Score = 30.4 bits (67), Expect = 5.1 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -3 Query: 470 DGANRTGQALRCSKHQ*K--KRG*RP*RLPQLTVEIGSSQGTS*GIRREGKEEESREIGD 297 D A R + LR +KH+ +R +L LT ++ S +GT+ + R+ +E+E R + + Sbjct: 266 DAAARNAELLRQAKHEANDYRR-----QLQSLTCDLESLRGTNESLERQMREQEERHVRE 320 Query: 296 A 294 A Sbjct: 321 A 321
>ASB15_BOVIN (Q8HXA6) Ankyrin repeat and SOCS box protein 15 (ASB-15)| Length = 588 Score = 30.0 bits (66), Expect = 6.7 Identities = 18/88 (20%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Frame = -1 Query: 640 VGTLHKMVIC*LNFLPEMGK*SPF*KIYQKGPRVRET----SSYSRFFAVGLFRLLELSN 473 VG++ +++I ++++P K ++ ++ P +R+ S + + RL+ L Sbjct: 494 VGSVIRVLIDYMDYIPLCAKLKSALEVQREWPEIRQILENPCSLKHLCRLKIRRLMGLQR 553 Query: 472 ATEPTVLDKLCAALNINKKSVDRDLDVY 389 +PT+++KL I + + ++ D+Y Sbjct: 554 LCQPTLMEKLSLPPTIQRYILFKEYDLY 581
>THF1_SYNJA (Q2JSQ3) Protein thf1| Length = 239 Score = 30.0 bits (66), Expect = 6.7 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%) Frame = -1 Query: 526 SYSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLSK 371 +YSR AVGL+ E S EP L+ + L + + V +DL++YR+ L + Sbjct: 139 AYSRVLAVGLYTAYEAVATSLYKEPEERTRHFLEDVIGNLPFSPERVKKDLELYRSNLDR 198 Query: 370 LVQA 359 L QA Sbjct: 199 LKQA 202
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.7 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -1 Query: 199 QILTVIH-LDSVENYRGHLWLLLAWCSTR 116 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.7 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -1 Query: 199 QILTVIH-LDSVENYRGHLWLLLAWCSTR 116 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.7 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -1 Query: 199 QILTVIH-LDSVENYRGHLWLLLAWCSTR 116 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>THF1_SYNPX (Q7U6N6) Protein thf1| Length = 212 Score = 29.6 bits (65), Expect = 8.7 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Frame = -1 Query: 553 KGPRVRETSSYSRFFAVGLFRLLEL-SNATEPTVLD----KLCAALNINKKSVDRDLDVY 389 K + + + YSR AVGL LLE S+ ++ + L KL L + + V++DL V+ Sbjct: 115 KEQSLSDGAHYSRLMAVGLLALLEASSDESDASSLRQRAVKLSVDLGLPAERVEKDLTVF 174 Query: 388 RNLLSKLVQA 359 + ++ QA Sbjct: 175 SSNSERMEQA 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,533,757 Number of Sequences: 219361 Number of extensions: 1792646 Number of successful extensions: 4889 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4776 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4882 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
