ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14c21 |
|---|---|
| Clone Library Name | barley_pub |
>NPL4_HUMAN (Q8TAT6) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 37.0 bits (84), Expect = 0.039 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 24/133 (18%) Frame = -3 Query: 550 VHFEAFQMSEVCVKLFKDGVLETEVKDSDDPRLSK-----------MRKEVIAGGKDTME 404 VHFE +Q+S C+ L +D L KD+ + +K K+V G + + Sbjct: 379 VHFEGYQVSNQCMALVRDECL-LPCKDAPELGYAKESSSEQYVPDVFYKDVDKFGNEITQ 437 Query: 403 VDN----DFFLVPVKISDHQGPLST------GFPVENR---GIPLPASALRSHMDRAKHL 263 + ++ ++ + + + P+ T FP+ENR G +L +++ + Sbjct: 438 LARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLATYLSQNTSS 497 Query: 262 PFVKRISDFHLLL 224 F+ ISDFHLLL Sbjct: 498 VFLDTISDFHLLL 510
>NPL4_RAT (Q9ES54) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 36.6 bits (83), Expect = 0.051 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 24/133 (18%) Frame = -3 Query: 550 VHFEAFQMSEVCVKLFKDGVLETEVKDSDDPRLSK-----------MRKEVIAGGKDTME 404 VHFE +Q+S C+ L +D L KD+ + +K K++ G + + Sbjct: 379 VHFEGYQVSNQCMALVRDECL-LPCKDAPELGYAKESSSEQYVPDVFYKDIDKFGNEITQ 437 Query: 403 VDN----DFFLVPVKISDHQGPLST------GFPVENR---GIPLPASALRSHMDRAKHL 263 + ++ ++ + + + P+ T FP+ENR G +L +++ + Sbjct: 438 LARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLATYLSQNTSS 497 Query: 262 PFVKRISDFHLLL 224 F+ ISDFHLLL Sbjct: 498 VFLDTISDFHLLL 510
>NPL4_MOUSE (P60670) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 36.6 bits (83), Expect = 0.051 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 24/133 (18%) Frame = -3 Query: 550 VHFEAFQMSEVCVKLFKDGVLETEVKDSDDPRLSK-----------MRKEVIAGGKDTME 404 VHFE +Q+S C+ L +D L KD+ + +K K++ G + + Sbjct: 379 VHFEGYQVSNQCMALVRDECL-LPCKDAPELGYAKESSSEQYVPDVFYKDIDKFGNEITQ 437 Query: 403 VDN----DFFLVPVKISDHQGPLST------GFPVENR---GIPLPASALRSHMDRAKHL 263 + ++ ++ + + + P+ T FP+ENR G +L +++ + Sbjct: 438 LARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLATYLSQNTSS 497 Query: 262 PFVKRISDFHLLL 224 F+ ISDFHLLL Sbjct: 498 VFLDTISDFHLLL 510
>PYGO2_HUMAN (Q9BRQ0) Pygopus homolog 2| Length = 406 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -2 Query: 359 PGPALDGISGGKPWNSSAGER-AQEPHGSCKASAFRQAHL*FPPASPDR 216 PGP G GGKP N A QEPH A+A FPP S R Sbjct: 252 PGPG--GEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGR 298
>SUMT_METIV (P29564) Uroporphyrin-III C-methyltransferase (EC 2.1.1.107)| (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM) Length = 230 Score = 30.8 bits (68), Expect = 2.8 Identities = 23/88 (26%), Positives = 40/88 (45%) Frame = -3 Query: 532 QMSEVCVKLFKDGVLETEVKDSDDPRLSKMRKEVIAGGKDTMEVDNDFFLVPVKISDHQG 353 +++ + V+ K+ L +K D + +E++A +E DF LVP S Sbjct: 64 EINTLLVEEAKENDLVVRLKGGDPFVFGRGGEEILA----LVEEGIDFELVPGVTSAIGV 119 Query: 352 PLSTGFPVENRGIPLPASALRSHMDRAK 269 P + G PV +RG+ + + H D K Sbjct: 120 PTTIGLPVTHRGVATSFTVVTGHEDPTK 147
>ANXA3_RAT (P14669) Annexin A3 (Annexin III) (Lipocortin III) (Placental| anticoagulant protein III) (PAP-III) (35-alpha calcimedin) Length = 323 Score = 30.8 bits (68), Expect = 2.8 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Frame = +2 Query: 278 IHVAPERARRQRNSTVFHRKSRRERAL---VIGDLDGHQEEVIVHL 406 I++ ER+ QR V H + E+AL + GDL GH E V+V L Sbjct: 42 INILTERSNAQRQLIVKHIQEAYEQALKADLKGDLSGHFEHVMVAL 87
>BUB3_PONPY (Q5RB58) Mitotic checkpoint protein BUB3| Length = 328 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Frame = -2 Query: 290 EPHGSCKASAFRQAHL*FP-PASPDRCFPGCEGRRPYSGCVRRTGQT*TNGEGLLKQETR 114 +P C A F Q + S DR G GRR +R G E LK +TR Sbjct: 124 DPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 183 Query: 113 C 111 C Sbjct: 184 C 184
>BUB3_HUMAN (O43684) Mitotic checkpoint protein BUB3| Length = 328 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Frame = -2 Query: 290 EPHGSCKASAFRQAHL*FP-PASPDRCFPGCEGRRPYSGCVRRTGQT*TNGEGLLKQETR 114 +P C A F Q + S DR G GRR +R G E LK +TR Sbjct: 124 DPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTR 183 Query: 113 C 111 C Sbjct: 184 C 184
>ZN638_MOUSE (Q61464) Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger| matrin-like protein) Length = 1960 Score = 29.6 bits (65), Expect = 6.3 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = -3 Query: 541 EAFQMSEVCVKLFKDGVLETEVKDSDDPRLSKMRKEVIAGGKDTMEVDNDF-FLVP 377 EAFQMSE GV + E+KDS+ + ++ G T +V D FLVP Sbjct: 1859 EAFQMSE--------GVDDAELKDSEPDEKRRKTQDSSVGKSMTSDVPGDLDFLVP 1906
>SPG21_PONPY (Q5RES2) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 308 Score = 29.6 bits (65), Expect = 6.3 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 9/116 (7%) Frame = -3 Query: 538 AFQMSEVCVKLFKDGVLETEVKDSDD---PRLSKMRKEVIAGGKDTMEVDNDFFL----- 383 AF + ++ + F G ++ + D+ D RL + + +A + T+ N + Sbjct: 157 AFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELAS-RLTLNCQNSYVEPHKIR 215 Query: 382 -VPVKISDHQGPLSTGFPVENRGIPLPASALRSHMDRAKHLPFVKRISDFHLLLQI 218 +PV I D G + + L +A R+H+ + P++ R ++ +L +QI Sbjct: 216 DIPVTIMDVFGQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQI 271
>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor| Length = 4010 Score = 29.6 bits (65), Expect = 6.3 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = +2 Query: 56 HLRHSYKLHMRRESKLLNGTVFLVSVNPLHWFMFDLSYARSQSRDVCLHIQESSDLEKQV 235 H H ++H+ + +G + L+S PLH F LS + + + VC ++ + DL Sbjct: 3330 HKEHPNRIHISVQIPHQDGMLPLISTMPLHNLHFLLSESIYRHQHVCSNLVTARDLRGLA 3389 Query: 236 E 238 E Sbjct: 3390 E 3390
>Y1571_PASMU (Q9CKN9) Hypothetical UPF0004 protein PM1571| Length = 446 Score = 29.6 bits (65), Expect = 6.3 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 27/184 (14%) Frame = +2 Query: 26 RIYELRTRLTHLR--HSYKLHMRRESKLLNGTVFLVSVN----------PLHWFMFDLSY 169 RI E+ ++ + HSY+ M++ K + + VN P H+ +S Sbjct: 87 RIREVHPKVLEVTGPHSYEAVMQQVHKYVPKPAYNPYVNLVPKQGVKLTPKHYAYLKISE 146 Query: 170 ARSQSRDVCLHIQESSDLEKQVEIRDALDERQMLCTIHV-------------APERARRQ 310 C+ DL+ + I LDE + L V A +R++ + Sbjct: 147 GCDHRCTFCIIPSMRGDLDSR-SITQVLDEAKRLVEAGVKEILVVSQDTSAYALDRSKEE 205 Query: 311 RNSTVFHRKSRRERALVIGDLDGHQEEVIVHLHGVLP--PCNHLLAHLGQAGVVGVLDLR 484 +N TVF + L+ + V V LH V P + L+ + + ++ LD+ Sbjct: 206 QNKTVFWNGMPIKNNLISLCEQLGKLGVWVRLHYVYPYPHVDQLIPLMAEGKILPYLDIP 265 Query: 485 LQHA 496 LQHA Sbjct: 266 LQHA 269
>NIFD_CLOPA (P00467) Nitrogenase molybdenum-iron protein alpha chain (EC| 1.18.6.1) (Nitrogenase component I) (Dinitrogenase) Length = 533 Score = 29.3 bits (64), Expect = 8.2 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = -3 Query: 499 DGVLET---EVKDSDDPRLSKMRKEVIAGGKDTMEVDNDFF 386 DG++ET K DDP L+K +EVIA ++ D D+F Sbjct: 289 DGIVETLRDMAKCFDDPELTKRTEEVIAEEIAAIQDDLDYF 329
>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor| Length = 4007 Score = 29.3 bits (64), Expect = 8.2 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = +2 Query: 56 HLRHSYKLHMRRESKLLNGTVFLVSVNPLHWFMFDLSYARSQSRDVCLHIQESSDLEKQV 235 H H ++H+ + +G + L+S PLH F LS + + + VC ++ + DL Sbjct: 3327 HKEHPNRIHISVQIPHQDGMLPLISTMPLHNLHFLLSESIYRHQHVCSNLVTTYDLRGLA 3386 Query: 236 E 238 E Sbjct: 3387 E 3387
>ATG16_EMENI (Q5BH90) Autophagy protein 16| Length = 202 Score = 29.3 bits (64), Expect = 8.2 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Frame = +2 Query: 5 RPLRNGKRIYELRTRLTHLRHSYK---LHMRRESKLLNG 112 R ++NGKRI + + +THL+ K +R ++KLL G Sbjct: 113 RNIQNGKRISSMESEITHLQLRLKDRDEELREKAKLLEG 151 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,513,855 Number of Sequences: 219361 Number of extensions: 1823956 Number of successful extensions: 5602 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5400 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5601 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
