ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14c21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_193885.1| Oryza sativa (japonica cultivar-group), predic... 206 6e-50
2dbj|AK059266.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
4dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
5dbj|AK107503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
6dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
7ref|NM_189382.1| Oryza sativa (japonica cultivar-group), predic... 133 7e-28
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
9dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
10dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
11ref|XM_480621.1| Oryza sativa (japonica cultivar-group), mRNA 125 2e-25
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
13dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
14dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
15emb|AL022575.1|HS159A15 Human DNA sequence from clone RP1-159A15... 42 2.0
16gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, c... 42 2.0
17gb|AC005274.1|AC005274 Homo sapiens chromosome 17, clone hRPK.10... 42 2.0
18gb|CP000224.1| Drosophila melanogaster genomic scaffold 21100002... 42 2.0
19gb|AC101706.9| Mus musculus chromosome 15, clone RP23-256L18, co... 40 7.7
20gb|AC147633.3| Mus musculus BAC clone RP23-302B3 from chromosome... 40 7.7
21gb|AC122906.4| Mus musculus BAC clone RP23-47D11 from 10, comple... 40 7.7
22gb|AC121880.2| Mus musculus BAC clone RP24-132E6 from 13, comple... 40 7.7
23gb|AC158907.2| Mus musculus chromosome 15, clone RP24-266D22, co... 40 7.7
24gb|AF443118.1|AF443118 Gossypium hirsutum polyphosphoinositide b... 40 7.7
25dbj|AB052134.1| Macaca fascicularis brain cDNA, clone:QccE-18183... 40 7.7
26gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H... 40 7.7
27gb|AC147615.3| Mus musculus BAC clone RP23-408N24 from 10, compl... 40 7.7

>ref|NM_193885.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1248

 Score =  206 bits (104), Expect = 6e-50
 Identities = 284/344 (82%)
 Strand = Plus / Minus

                                                                        
Query: 207  aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 266
            ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || |||
Sbjct: 1145 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 1086

                                                                        
Query: 267  tgctttgcacgatccatgtggctcctgagcgcgctcgccggcagaggaattccacggttt 326
            ||||| |||||||||| ||||||| |||||||||||   |  | |||  |||||||||| 
Sbjct: 1085 tgcttagcacgatccaggtggctcttgagcgcgctcattgctacagggtttccacggttc 1026

                                                                        
Query: 327  tccaccggaaatcccgtcgagagcgggccctggtgatcggagatcttgacgggcaccagg 386
            || |  ||||| || || || || || ||||| ||||| ||||||||||| |||||||||
Sbjct: 1025 tcgataggaaagccggttgaaagtggaccctgatgatcagagatcttgacaggcaccagg 966

                                                                        
Query: 387  aagaagtcattgtccacctccatggtgtccttcccccctgcaatcacctccttgcgcatc 446
            ||||||||||||||||||||||| || ||||| ||||| || | |||||| || ||||||
Sbjct: 965  aagaagtcattgtccacctccatagtatcctttcccccagccaccacctctttccgcatc 906

                                                                        
Query: 447  ttggacaggcgggggtcgtcggagtccttgacctccgtctccagcacgccgtccttgaac 506
            |||||||||||||| |||||   ||||   | ||||||||||||||| || |||||||||
Sbjct: 905  ttggacaggcggggatcgtctttgtccccaatctccgtctccagcacaccatccttgaac 846

                                                        
Query: 507  agcttgacgcagacctcgctcatctggaaggcctcgaagtgcac 550
            ||||| || || | ||| ||||||||||| ||||||||||||||
Sbjct: 845  agcttcacacaaatctcactcatctggaacgcctcgaagtgcac 802



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>dbj|AK059266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B02, full
            insert sequence
          Length = 1478

 Score =  198 bits (100), Expect = 1e-47
 Identities = 283/344 (82%)
 Strand = Plus / Minus

                                                                        
Query: 207  aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 266
            ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || |||
Sbjct: 1188 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 1129

                                                                        
Query: 267  tgctttgcacgatccatgtggctcctgagcgcgctcgccggcagaggaattccacggttt 326
            ||||| |||||||||| ||||||| |||||||||||   |  | |||  |||||||||| 
Sbjct: 1128 tgcttagcacgatccaggtggctcttgagcgcgctcattgctacagggtttccacggttc 1069

                                                                        
Query: 327  tccaccggaaatcccgtcgagagcgggccctggtgatcggagatcttgacgggcaccagg 386
            || |  ||||| || || || || || ||||| ||||| ||||||||||| |||||||||
Sbjct: 1068 tcgataggaaagccggttgaaagtggaccctgatgatcagagatcttgacaggcaccagg 1009

                                                                        
Query: 387  aagaagtcattgtccacctccatggtgtccttcccccctgcaatcacctccttgcgcatc 446
            ||||||||||||||||||||||| || ||||| ||||| || | |||| | || ||||||
Sbjct: 1008 aagaagtcattgtccacctccatagtatcctttcccccagccaccacccctttccgcatc 949

                                                                        
Query: 447  ttggacaggcgggggtcgtcggagtccttgacctccgtctccagcacgccgtccttgaac 506
            |||||||||||||| |||||   ||||   | ||||||||||||||| || |||||||||
Sbjct: 948  ttggacaggcggggatcgtctttgtccccaatctccgtctccagcacaccatccttgaac 889

                                                        
Query: 507  agcttgacgcagacctcgctcatctggaaggcctcgaagtgcac 550
            ||||| || || | ||| ||||||||||| ||||||||||||||
Sbjct: 888  agcttcacacaaatctcactcatctggaacgcctcgaagtgcac 845



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  174 bits (88), Expect = 2e-40
 Identities = 169/196 (86%)
 Strand = Plus / Minus

                                                                            
Query: 355      cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 414
                |||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct: 15627988 cctgatgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtat 15627929

                                                                            
Query: 415      ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 474
                |||| ||||| || | |||||| || |||||||||||||||||||| |||||   |||| 
Sbjct: 15627928 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 15627869

                                                                            
Query: 475      tgacctccgtctccagcacgccgtccttgaacagcttgacgcagacctcgctcatctgga 534
                  | ||||||||||||||| || |||||||||||||| || || | ||| ||||||||||
Sbjct: 15627868 caatctccgtctccagcacaccatccttgaacagcttcacacaaatctcactcatctgga 15627809

                                
Query: 535      aggcctcgaagtgcac 550
                | ||||||||||||||
Sbjct: 15627808 acgcctcgaagtgcac 15627793



 Score =  137 bits (69), Expect = 4e-29
 Identities = 135/157 (85%)
 Strand = Plus / Minus

                                                                            
Query: 355      cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 414
                |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct: 42465667 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtat 42465608

                                                                            
Query: 415      ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 474
                |||| ||||| || | |||||| || |||||||||||||||||||| |||||   |||| 
Sbjct: 42465607 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 42465548

                                                     
Query: 475      tgacctccgtctccagcacgccgtccttgaacagctt 511
                | | || ||||| |||||| || |||||||| |||||
Sbjct: 42465547 taatcttcgtctgcagcacaccatccttgaatagctt 42465511



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                            
Query: 207      aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 266
                ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || |||
Sbjct: 15631081 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 15631022

                                                    
Query: 267      tgctttgcacgatccatgtggctcctgagcgcgctc 302
                ||||| |||||||||| ||||||| |||||||||||
Sbjct: 15631021 tgcttagcacgatccaggtggctcttgagcgcgctc 15630986



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>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0416G11
          Length = 138858

 Score =  174 bits (88), Expect = 2e-40
 Identities = 169/196 (86%)
 Strand = Plus / Minus

                                                                         
Query: 355   cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 414
             |||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct: 65885 cctgatgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtat 65826

                                                                         
Query: 415   ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 474
             |||| ||||| || | |||||| || |||||||||||||||||||| |||||   |||| 
Sbjct: 65825 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 65766

                                                                         
Query: 475   tgacctccgtctccagcacgccgtccttgaacagcttgacgcagacctcgctcatctgga 534
               | ||||||||||||||| || |||||||||||||| || || | ||| ||||||||||
Sbjct: 65765 caatctccgtctccagcacaccatccttgaacagcttcacacaaatctcactcatctgga 65706

                             
Query: 535   aggcctcgaagtgcac 550
             | ||||||||||||||
Sbjct: 65705 acgcctcgaagtgcac 65690



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                         
Query: 207   aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 266
             ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || |||
Sbjct: 68978 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 68919

                                                 
Query: 267   tgctttgcacgatccatgtggctcctgagcgcgctc 302
             ||||| |||||||||| ||||||| |||||||||||
Sbjct: 68918 tgcttagcacgatccaggtggctcttgagcgcgctc 68883



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>dbj|AK107503.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E03, full
            insert sequence
          Length = 2089

 Score =  174 bits (88), Expect = 2e-40
 Identities = 169/196 (86%)
 Strand = Plus / Minus

                                                                        
Query: 355  cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 414
            |||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct: 1036 cctgatgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtat 977

                                                                        
Query: 415  ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 474
            |||| ||||| || | |||||| || |||||||||||||||||||| |||||   |||| 
Sbjct: 976  cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 917

                                                                        
Query: 475  tgacctccgtctccagcacgccgtccttgaacagcttgacgcagacctcgctcatctgga 534
              | ||||||||||||||| || |||||||||||||| || || | ||| ||||||||||
Sbjct: 916  caatctccgtctccagcacaccatccttgaacagcttcacacaaatctcactcatctgga 857

                            
Query: 535  aggcctcgaagtgcac 550
            | ||||||||||||||
Sbjct: 856  acgcctcgaagtgcac 841



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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0483G10
          Length = 190721

 Score =  137 bits (69), Expect = 4e-29
 Identities = 135/157 (85%)
 Strand = Plus / Minus

                                                                          
Query: 355    cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 414
              |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct: 125005 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtat 124946

                                                                          
Query: 415    ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 474
              |||| ||||| || | |||||| || |||||||||||||||||||| |||||   |||| 
Sbjct: 124945 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 124886

                                                   
Query: 475    tgacctccgtctccagcacgccgtccttgaacagctt 511
              | | || ||||| |||||| || |||||||| |||||
Sbjct: 124885 taatcttcgtctgcagcacaccatccttgaatagctt 124849



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>ref|NM_189382.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1098

 Score =  133 bits (67), Expect = 7e-28
 Identities = 100/111 (90%)
 Strand = Plus / Minus

                                                                       
Query: 356 ctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgtc 415
           ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct: 963 ctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtatc 904

                                                              
Query: 416 cttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtc 466
           ||| ||||| || | |||||| || |||||||||||||||||||| |||||
Sbjct: 903 ctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtc 853



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  129 bits (65), Expect = 1e-26
 Identities = 134/157 (85%)
 Strand = Plus / Minus

                                                                           
Query: 355     cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 414
               |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |  |
Sbjct: 6250274 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagcat 6250215

                                                                           
Query: 415     ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 474
               |||| ||||| || | |||||| || |||||||||||||||||||| |||||   |||| 
Sbjct: 6250214 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 6250155

                                                    
Query: 475     tgacctccgtctccagcacgccgtccttgaacagctt 511
               | | || ||||| |||||| || |||||||| |||||
Sbjct: 6250154 taatcttcgtctgcagcacaccatccttgaatagctt 6250118



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>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1734_E04
          Length = 101439

 Score =  129 bits (65), Expect = 1e-26
 Identities = 134/157 (85%)
 Strand = Plus / Minus

                                                                         
Query: 355   cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 414
             |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |  |
Sbjct: 36411 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagcat 36352

                                                                         
Query: 415   ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 474
             |||| ||||| || | |||||| || |||||||||||||||||||| |||||   |||| 
Sbjct: 36351 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 36292

                                                  
Query: 475   tgacctccgtctccagcacgccgtccttgaacagctt 511
             | | || ||||| |||||| || |||||||| |||||
Sbjct: 36291 taatcttcgtctgcagcacaccatccttgaatagctt 36255



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>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1119_C05
          Length = 126112

 Score =  129 bits (65), Expect = 1e-26
 Identities = 134/157 (85%)
 Strand = Plus / Minus

                                                                          
Query: 355    cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 414
              |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |  |
Sbjct: 113667 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagcat 113608

                                                                          
Query: 415    ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 474
              |||| ||||| || | |||||| || |||||||||||||||||||| |||||   |||| 
Sbjct: 113607 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 113548

                                                   
Query: 475    tgacctccgtctccagcacgccgtccttgaacagctt 511
              | | || ||||| |||||| || |||||||| |||||
Sbjct: 113547 taatcttcgtctgcagcacaccatccttgaatagctt 113511



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>ref|XM_480621.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 537

 Score =  125 bits (63), Expect = 2e-25
 Identities = 99/111 (89%)
 Strand = Plus / Minus

                                                                       
Query: 356 ctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgtc 415
           ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |  ||
Sbjct: 528 ctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagcatc 469

                                                              
Query: 416 cttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtc 466
           ||| ||||| || | |||||| || |||||||||||||||||||| |||||
Sbjct: 468 ctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtc 418



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 55/57 (96%)
 Strand = Plus / Plus

                                                                         
Query: 355      cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatgg 411
                |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 19698724 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatgg 19698780



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>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0048D08
          Length = 145772

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 55/57 (96%)
 Strand = Plus / Plus

                                                                      
Query: 355   cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatgg 411
             |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 30730 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatgg 30786



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>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0041J06
          Length = 138157

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 55/57 (96%)
 Strand = Plus / Plus

                                                                       
Query: 355    cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatgg 411
              |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 137374 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatgg 137430



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>emb|AL022575.1|HS159A15 Human DNA sequence from clone RP1-159A15 on chromosome X Contains the
             3' end of a novel gene, complete sequence
          Length = 71934

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 141   tccattggtttatgtttgacc 161
             |||||||||||||||||||||
Sbjct: 42126 tccattggtttatgtttgacc 42106



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>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence
          Length = 215303

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 380    caccaggaagaagtcattgtc 400
              |||||||||||||||||||||
Sbjct: 175061 caccaggaagaagtcattgtc 175081



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>gb|AC005274.1|AC005274 Homo sapiens chromosome 17, clone hRPK.1090_M_7, complete sequence
          Length = 205150

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 138   ctctccattggtttatgtttgacct 162
             |||||||||||||||||||| ||||
Sbjct: 38714 ctctccattggtttatgttttacct 38690



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>gb|CP000224.1| Drosophila melanogaster genomic scaffold 211000022280794
          Length = 474727

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 206    caggaaagcagcgatctggag 226
              |||||||||||||||||||||
Sbjct: 295135 caggaaagcagcgatctggag 295155



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>gb|AC101706.9| Mus musculus chromosome 15, clone RP23-256L18, complete sequence
          Length = 170006

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    ctctccattggtttatgttt 157
              ||||||||||||||||||||
Sbjct: 152564 ctctccattggtttatgttt 152545



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>gb|AC147633.3| Mus musculus BAC clone RP23-302B3 from chromosome 13, complete sequence
          Length = 218640

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    agacattcatataaattaca 81
             ||||||||||||||||||||
Sbjct: 17866 agacattcatataaattaca 17885



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>gb|AC122906.4| Mus musculus BAC clone RP23-47D11 from 10, complete sequence
          Length = 191190

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    catataaattacacatgaga 88
             ||||||||||||||||||||
Sbjct: 72888 catataaattacacatgaga 72869



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>gb|AC121880.2| Mus musculus BAC clone RP24-132E6 from 13, complete sequence
          Length = 143546

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     agacattcatataaattaca 81
              ||||||||||||||||||||
Sbjct: 101632 agacattcatataaattaca 101613



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>gb|AC158907.2| Mus musculus chromosome 15, clone RP24-266D22, complete sequence
          Length = 146781

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ctctccattggtttatgttt 157
             ||||||||||||||||||||
Sbjct: 77129 ctctccattggtttatgttt 77148



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>gb|AF443118.1|AF443118 Gossypium hirsutum polyphosphoinositide binding protein (Ssh2)
           mRNA, complete cds
          Length = 955

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 359 gtgatcggagatcttgacgg 378
           ||||||||||||||||||||
Sbjct: 476 gtgatcggagatcttgacgg 495



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>dbj|AB052134.1| Macaca fascicularis brain cDNA, clone:QccE-18183, similar to human
            histone deacetylase 1(HDAC11), mRNA, NM_024827.1
          Length = 3160

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  caggtggaaatcagagatgc 249
            ||||||||||||||||||||
Sbjct: 2308 caggtggaaatcagagatgc 2327



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>gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H3 map 14q31, complete sequence
          Length = 190773

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 58    cctgagacattcatataaattaca 81
             |||||||| |||||||||||||||
Sbjct: 17012 cctgagactttcatataaattaca 16989



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>gb|AC147615.3| Mus musculus BAC clone RP23-408N24 from 10, complete sequence
          Length = 205962

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    catataaattacacatgaga 88
             ||||||||||||||||||||
Sbjct: 49124 catataaattacacatgaga 49105


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,312,134
Number of Sequences: 3902068
Number of extensions: 4312134
Number of successful extensions: 81606
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81457
Number of HSP's gapped (non-prelim): 149
length of query: 570
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 547
effective length of database: 17,143,297,704
effective search space: 9377383844088
effective search space used: 9377383844088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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