ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13n18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT019136.1| Zea mays clone Contig775.F mRNA sequence 256 8e-65
2gb|AY106510.1| Zea mays PCO107914 mRNA sequence 256 8e-65
3ref|XM_470493.1| Oryza sativa (japonica cultivar-group), mRNA 254 3e-64
4dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 3e-64
5gb|BT017194.1| Zea mays clone EL01N0371D04.c mRNA sequence 236 8e-59
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 109 1e-20
7gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 109 1e-20
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
9gb|AY112246.1| Zea mays CL3465_-1 mRNA sequence 66 2e-07
10emb|AL160033.21| Human DNA sequence from clone RP11-480K16 on ch... 48 0.037
11emb|AL591069.5| Human DNA sequence from clone RP11-72O9 on chrom... 42 2.3
12emb|AL591404.4| Mouse DNA sequence from clone RP23-394O9 on chro... 42 2.3
13dbj|AP003972.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 2.3
14gb|AC152821.5| Mus musculus BAC clone RP24-366H21 from chromosom... 40 9.1
15gb|AF178757.1| Anabaena PCC7120 phycobilisome rod structure gene... 40 9.1
16gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.1
17gb|AC119406.6| Trypanosoma brucei chromosome 8 clone RPCI93-28L1... 40 9.1
18gb|AC092212.32| Trypanosoma brucei chromosome 8 clone RPCI93-10J... 40 9.1
19gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 9.1
20gb|AC099596.6| Mus musculus chromosome 15, clone RP23-26P23, com... 40 9.1
21ref|XM_429124.1| PREDICTED: Gallus gallus similar to glutaredoxi... 40 9.1
22gb|AC119893.9| Mus musculus chromosome 1, clone RP24-225A6, comp... 40 9.1
23gb|AC132270.3| Mus musculus BAC clone RP24-338C23 from chromosom... 40 9.1
24gb|AC139673.9| Mus musculus chromosome 1, clone RP23-280I2, comp... 40 9.1
25gb|AC135808.4| Mus musculus BAC clone RP24-316N5 from chromosome... 40 9.1
26gb|AC144851.3| Mus musculus BAC clone RP24-329H15 from chromosom... 40 9.1
27ref|XM_824044.1| Trypanosoma brucei TREU927 SNF2 DNA repair prot... 40 9.1
28ref|XM_570541.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 9.1
29gb|AC108797.8| Mus musculus chromosome 3, clone RP23-349M18, com... 40 9.1
30emb|AL161722.9| Human DNA sequence from clone RP11-497J7 on chro... 40 9.1
31gb|AC158907.2| Mus musculus chromosome 15, clone RP24-266D22, co... 40 9.1
32emb|Y09235.1|GGGRX G.gallus mRNA for glutaredoxin 40 9.1
33emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 9.1
34gb|AC182763.2| Mus musculus BAC clone RP24-56N19 from chromosome... 40 9.1
35gb|AC175491.3| Mus musculus BAC clone RP24-90O21 from chromosome... 40 9.1
36gb|AC177799.3| Mus musculus BAC clone RP24-374O22 from chromosom... 40 9.1
37gb|AF503335.1| Mus musculus strain 129/Sv gamma casein gene, com... 40 9.1
38gb|AC116104.7| Mus musculus chromosome 5, clone RP23-18K20, comp... 40 9.1
39gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete ... 40 9.1
40gb|AC074046.9|AC074046 Mus musculus 5 BAC RP23-440C1 (Roswell Pa... 40 9.1
41ref|NM_205160.1| Gallus gallus glutaredoxin (GRX), mRNA 40 9.1
42dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 9.1
43emb|AJ291459.1|MMU291459 Mus musculus partial HSD17B7 gene for 1... 40 9.1
44dbj|AP001977.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.1
45dbj|AP000664.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 9.1
46emb|CT737256.1| RP43-049D20, complete sequence 40 9.1
47gb|M80435.1|ANARODCORA Anabaena sp. cpcF gene, 3' end; cpcG1, cp... 40 9.1
48emb|AL626776.15| Mouse DNA sequence from clone RP23-73N17 on chr... 40 9.1 
>gb|BT019136.1| Zea mays clone Contig775.F mRNA sequence
          Length = 960

 Score =  256 bits (129), Expect = 8e-65
 Identities = 267/313 (85%)
 Strand = Plus / Minus

                                                                       
Query: 341 ccaccatttggaatagtccgtggagcccaagcaatgccagaaatagcaccttcatgagcc 400
           |||||||| ||||| |||||||||||||||||||||||||  ||| |||||||||| || 
Sbjct: 582 ccaccattgggaattgtccgtggagcccaagcaatgccagttatatcaccttcatgtgct 523

                                                                       
Query: 401 ttctcggctgtatccaaaaccacaccagtttctgcacatagccattgcaacgtcgatcca 460
           || || ||||||||||||||  ||||||||||  ||  || |||||||||||| ||||||
Sbjct: 522 ttgtcagctgtatccaaaactgcaccagtttccacaagtaaccattgcaacgttgatcca 463

                                                                       
Query: 461 cttgtcacagccagaattttaccatctggggagatgcccatgtgttcatacaggcaagta 520
           ||||| |||||||||||||||||||| || ||||    |||||| |||||| |||||  |
Sbjct: 462 cttgttacagccagaattttaccatcaggagagactgtcatgtgatcatactggcaaaca 403

                                                                       
Query: 521 gagcctttcgaatcatgcagagggactggcaaaactctcaaggttttgggatcctcatca 580
           || ||||| || ||||| || || | ||||| ||||||||||||||| ||||||||||||
Sbjct: 402 gaacctttagagtcatgaagtggaattggcataactctcaaggtttttggatcctcatca 343

                                                                       
Query: 581 aggtgataccttacattgatattccatactcgaacggtaccatcttttgatgcagtaata 640
           ||||| || |||||||| || ||||||||||||| || ||||||||| ||||||||||||
Sbjct: 342 aggtggtatcttacattaatgttccatactcgaatggaaccatctttggatgcagtaata 283

                        
Query: 641 atcttctcagaat 653
           || | ||||||||
Sbjct: 282 atttgctcagaat 270
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>gb|AY106510.1| Zea mays PCO107914 mRNA sequence
          Length = 1820

 Score =  256 bits (129), Expect = 8e-65
 Identities = 267/313 (85%)
 Strand = Plus / Minus

                                                                        
Query: 341  ccaccatttggaatagtccgtggagcccaagcaatgccagaaatagcaccttcatgagcc 400
            |||||||| ||||| |||||||||||||||||||||||||  ||| |||||||||| || 
Sbjct: 1337 ccaccattgggaattgtccgtggagcccaagcaatgccagttatatcaccttcatgtgct 1278

                                                                        
Query: 401  ttctcggctgtatccaaaaccacaccagtttctgcacatagccattgcaacgtcgatcca 460
            || || ||||||||||||||  ||||||||||  ||  || |||||||||||| ||||||
Sbjct: 1277 ttgtcagctgtatccaaaactgcaccagtttccacaagtaaccattgcaacgttgatcca 1218

                                                                        
Query: 461  cttgtcacagccagaattttaccatctggggagatgcccatgtgttcatacaggcaagta 520
            ||||| |||||||||||||||||||| || ||||    |||||| |||||| |||||  |
Sbjct: 1217 cttgttacagccagaattttaccatcaggagagactgtcatgtgatcatactggcaaaca 1158

                                                                        
Query: 521  gagcctttcgaatcatgcagagggactggcaaaactctcaaggttttgggatcctcatca 580
            || ||||| || ||||| || || | ||||| ||||||||||||||| ||||||||||||
Sbjct: 1157 gaacctttagagtcatgaagtggaattggcataactctcaaggtttttggatcctcatca 1098

                                                                        
Query: 581  aggtgataccttacattgatattccatactcgaacggtaccatcttttgatgcagtaata 640
            ||||| || |||||||| || ||||||||||||| || ||||||||| ||||||||||||
Sbjct: 1097 aggtggtatcttacattaatgttccatactcgaatggaaccatctttggatgcagtaata 1038

                         
Query: 641  atcttctcagaat 653
            || | ||||||||
Sbjct: 1037 atttgctcagaat 1025
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>ref|XM_470493.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1724

 Score =  254 bits (128), Expect = 3e-64
 Identities = 326/392 (83%)
 Strand = Plus / Minus

                                                                        
Query: 277  aggagctaaccacagtttcacctttttgtcgtccccacaacttgctaacacaaaagcagg 336
            ||||||||||||||| ||||||||||||||  | |||  | | ||||| |||||||||||
Sbjct: 1383 aggagctaaccacagcttcacctttttgtccactccagcagtcgctaaaacaaaagcagg 1324

                                                                        
Query: 337  agcaccaccatttggaatagtccgtggagcccaagcaatgccagaaatagcaccttcatg 396
            ||  |||||||||||||| || ||||||||||| ||||||||||  ||| ||||||||||
Sbjct: 1323 agttccaccatttggaattgttcgtggagcccaggcaatgccagttatatcaccttcatg 1264

                                                                        
Query: 397  agccttctcggctgtatccaaaaccacaccagtttctgcacatagccattgcaacgtcga 456
             || ||||| |||||||| | |||  ||||||||||  |||||| |||||||| ||| ||
Sbjct: 1263 tgctttctcagctgtatcaagaactgcaccagtttccacacataaccattgcagcgttga 1204

                                                                        
Query: 457  tccacttgtcacagccagaattttaccatctggggagatgcccatgtgttcatacaggca 516
            ||||||||||   ||||||| |||  |||| || || |  | |||||| |||||| ||||
Sbjct: 1203 tccacttgtcgtggccagaactttctcatcaggagatacactcatgtgatcatactggca 1144

                                                                        
Query: 517  agtagagcctttcgaatcatgcagagggactggcaaaactctcaaggttttgggatcctc 576
            |  ||| ||||| |||||||| ||||| | ||||||||||||||||||||| || || ||
Sbjct: 1143 aacagaaccttttgaatcatggagaggaattggcaaaactctcaaggttttagggtcttc 1084

                                                                        
Query: 577  atcaaggtgataccttacattgatattccatactcgaacggtaccatcttttgatgcagt 636
            |||||| || ||||||||||| || |||||||||||||  ||||||||||| || || ||
Sbjct: 1083 atcaagatggtaccttacattaatgttccatactcgaattgtaccatctttggaagctgt 1024

                                            
Query: 637  aataatcttctcagaatccggagtgaaacaca 668
            |||||||| |||||||| | ||| ||||||||
Sbjct: 1023 aataatctgctcagaattcagagcgaaacaca 992
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>dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115J18, full
            insert sequence
          Length = 1749

 Score =  254 bits (128), Expect = 3e-64
 Identities = 326/392 (83%)
 Strand = Plus / Minus

                                                                        
Query: 277  aggagctaaccacagtttcacctttttgtcgtccccacaacttgctaacacaaaagcagg 336
            ||||||||||||||| ||||||||||||||  | |||  | | ||||| |||||||||||
Sbjct: 1403 aggagctaaccacagcttcacctttttgtccactccagcagtcgctaaaacaaaagcagg 1344

                                                                        
Query: 337  agcaccaccatttggaatagtccgtggagcccaagcaatgccagaaatagcaccttcatg 396
            ||  |||||||||||||| || ||||||||||| ||||||||||  ||| ||||||||||
Sbjct: 1343 agttccaccatttggaattgttcgtggagcccaggcaatgccagttatatcaccttcatg 1284

                                                                        
Query: 397  agccttctcggctgtatccaaaaccacaccagtttctgcacatagccattgcaacgtcga 456
             || ||||| |||||||| | |||  ||||||||||  |||||| |||||||| ||| ||
Sbjct: 1283 tgctttctcagctgtatcaagaactgcaccagtttccacacataaccattgcagcgttga 1224

                                                                        
Query: 457  tccacttgtcacagccagaattttaccatctggggagatgcccatgtgttcatacaggca 516
            ||||||||||   ||||||| |||  |||| || || |  | |||||| |||||| ||||
Sbjct: 1223 tccacttgtcgtggccagaactttctcatcaggagatacactcatgtgatcatactggca 1164

                                                                        
Query: 517  agtagagcctttcgaatcatgcagagggactggcaaaactctcaaggttttgggatcctc 576
            |  ||| ||||| |||||||| ||||| | ||||||||||||||||||||| || || ||
Sbjct: 1163 aacagaaccttttgaatcatggagaggaattggcaaaactctcaaggttttagggtcttc 1104

                                                                        
Query: 577  atcaaggtgataccttacattgatattccatactcgaacggtaccatcttttgatgcagt 636
            |||||| || ||||||||||| || |||||||||||||  ||||||||||| || || ||
Sbjct: 1103 atcaagatggtaccttacattaatgttccatactcgaattgtaccatctttggaagctgt 1044

                                            
Query: 637  aataatcttctcagaatccggagtgaaacaca 668
            |||||||| |||||||| | ||| ||||||||
Sbjct: 1043 aataatctgctcagaattcagagcgaaacaca 1012
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>gb|BT017194.1| Zea mays clone EL01N0371D04.c mRNA sequence
          Length = 733

 Score =  236 bits (119), Expect = 8e-59
 Identities = 251/295 (85%)
 Strand = Plus / Minus

                                                                       
Query: 341 ccaccatttggaatagtccgtggagcccaagcaatgccagaaatagcaccttcatgagcc 400
           |||||||| ||||| |||||||||||||||||||||||||  ||| |||||||||| || 
Sbjct: 303 ccaccattgggaattgtccgtggagcccaagcaatgccagttatatcaccttcatgtgct 244

                                                                       
Query: 401 ttctcggctgtatccaaaaccacaccagtttctgcacatagccattgcaacgtcgatcca 460
           || || ||||||||||||||  ||||||||||  ||  || |||||||||||| ||||||
Sbjct: 243 ttgtcagctgtatccaaaactgcaccagtttccacaagtaaccattgcaacgttgatcca 184

                                                                       
Query: 461 cttgtcacagccagaattttaccatctggggagatgcccatgtgttcatacaggcaagta 520
           ||||| |||||||||||||||||||| || ||||    |||||| |||||| |||||  |
Sbjct: 183 cttgttacagccagaattttaccatcaggagagactgtcatgtgatcatactggcaaaca 124

                                                                       
Query: 521 gagcctttcgaatcatgcagagggactggcaaaactctcaaggttttgggatcctcatca 580
           || ||||| || ||||| || || | ||||| ||||||||||||||| ||||||||||||
Sbjct: 123 gaacctttagagtcatgaagtggaattggcataactctcaaggtttttggatcctcatca 64

                                                                  
Query: 581 aggtgataccttacattgatattccatactcgaacggtaccatcttttgatgcag 635
           ||||| || |||||||| || ||||||||||||| || ||||||||| |||||||
Sbjct: 63  aggtggtatcttacattaatgttccatactcgaatggaaccatctttggatgcag 9
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 1e-20
 Identities = 169/207 (81%)
 Strand = Plus / Minus

                                                                            
Query: 388      accttcatgagccttctcggctgtatccaaaaccacaccagtttctgcacatagccattg 447
                ||||||||| || ||||| |||||||| | |||  ||||||||||  |||||| ||||||
Sbjct: 35927752 accttcatgtgctttctcagctgtatcaagaactgcaccagtttccacacataaccattg 35927693

                                                                            
Query: 448      caacgtcgatccacttgtcacagccagaattttaccatctggggagatgcccatgtgttc 507
                || ||| ||||||||||||   ||||||| |||  |||| || || |  | |||||| ||
Sbjct: 35927692 cagcgttgatccacttgtcgtggccagaactttctcatcaggagatacactcatgtgatc 35927633

                                                                            
Query: 508      atacaggcaagtagagcctttcgaatcatgcagagggactggcaaaactctcaaggtttt 567
                |||| |||||  ||| ||||| |||||||| ||||| | |||||||||||||||||||||
Sbjct: 35927632 atactggcaaacagaaccttttgaatcatggagaggaattggcaaaactctcaaggtttt 35927573

                                           
Query: 568      gggatcctcatcaaggtgataccttac 594
                 || || |||||||| || ||||||||
Sbjct: 35927572 agggtcttcatcaagatggtaccttac 35927546



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                            
Query: 602      ttccatactcgaacggtaccatcttttgatgcagtaataatcttctcagaatccggagtg 661
                |||||||||||||  ||||||||||| || || |||||||||| |||||||| | ||| |
Sbjct: 35926996 ttccatactcgaattgtaccatctttggaagctgtaataatctgctcagaattcagagcg 35926937

                       
Query: 662      aaacaca 668
                |||||||
Sbjct: 35926936 aaacaca 35926930



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                            
Query: 277      aggagctaaccacagtttcacctttttgtcgtccccacaacttgctaacacaaaagcagg 336
                ||||||||||||||| ||||||||||||||  | |||  | | ||||| |||||||||||
Sbjct: 35928682 aggagctaaccacagcttcacctttttgtccactccagcagtcgctaaaacaaaagcagg 35928623

                  
Query: 337      ag 338
                ||
Sbjct: 35928622 ag 35928621



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 343      accatttggaatagtccgtggagcccaagcaatgccag 380
                |||||||||||| || ||||||||||| ||||||||||
Sbjct: 35928325 accatttggaattgttcgtggagcccaggcaatgccag 35928288
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>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score =  109 bits (55), Expect = 1e-20
 Identities = 169/207 (81%)
 Strand = Plus / Plus

                                                                         
Query: 388   accttcatgagccttctcggctgtatccaaaaccacaccagtttctgcacatagccattg 447
             ||||||||| || ||||| |||||||| | |||  ||||||||||  |||||| ||||||
Sbjct: 33373 accttcatgtgctttctcagctgtatcaagaactgcaccagtttccacacataaccattg 33432

                                                                         
Query: 448   caacgtcgatccacttgtcacagccagaattttaccatctggggagatgcccatgtgttc 507
             || ||| ||||||||||||   ||||||| |||  |||| || || |  | |||||| ||
Sbjct: 33433 cagcgttgatccacttgtcgtggccagaactttctcatcaggagatacactcatgtgatc 33492

                                                                         
Query: 508   atacaggcaagtagagcctttcgaatcatgcagagggactggcaaaactctcaaggtttt 567
             |||| |||||  ||| ||||| |||||||| ||||| | |||||||||||||||||||||
Sbjct: 33493 atactggcaaacagaaccttttgaatcatggagaggaattggcaaaactctcaaggtttt 33552

                                        
Query: 568   gggatcctcatcaaggtgataccttac 594
              || || |||||||| || ||||||||
Sbjct: 33553 agggtcttcatcaagatggtaccttac 33579



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                         
Query: 602   ttccatactcgaacggtaccatcttttgatgcagtaataatcttctcagaatccggagtg 661
             |||||||||||||  ||||||||||| || || |||||||||| |||||||| | ||| |
Sbjct: 34129 ttccatactcgaattgtaccatctttggaagctgtaataatctgctcagaattcagagcg 34188

                    
Query: 662   aaacaca 668
             |||||||
Sbjct: 34189 aaacaca 34195



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 343   accatttggaatagtccgtggagcccaagcaatgccag 380
             |||||||||||| || ||||||||||| ||||||||||
Sbjct: 32800 accatttggaattgttcgtggagcccaggcaatgccag 32837



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 277   aggagctaaccacagtttcacctttttgtcgtccccacaacttgctaacacaaaagcagg 336
             ||||||||||||||| ||||||||||||||  | |||  | | ||||| |||||||||||
Sbjct: 32443 aggagctaaccacagcttcacctttttgtccactccagcagtcgctaaaacaaaagcagg 32502

               
Query: 337   ag 338
             ||
Sbjct: 32503 ag 32504
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 1e-20
 Identities = 169/207 (81%)
 Strand = Plus / Minus

                                                                            
Query: 388      accttcatgagccttctcggctgtatccaaaaccacaccagtttctgcacatagccattg 447
                ||||||||| || ||||| |||||||| | |||  ||||||||||  |||||| ||||||
Sbjct: 36017882 accttcatgtgctttctcagctgtatcaagaactgcaccagtttccacacataaccattg 36017823

                                                                            
Query: 448      caacgtcgatccacttgtcacagccagaattttaccatctggggagatgcccatgtgttc 507
                || ||| ||||||||||||   ||||||| |||  |||| || || |  | |||||| ||
Sbjct: 36017822 cagcgttgatccacttgtcgtggccagaactttctcatcaggagatacactcatgtgatc 36017763

                                                                            
Query: 508      atacaggcaagtagagcctttcgaatcatgcagagggactggcaaaactctcaaggtttt 567
                |||| |||||  ||| ||||| |||||||| ||||| | |||||||||||||||||||||
Sbjct: 36017762 atactggcaaacagaaccttttgaatcatggagaggaattggcaaaactctcaaggtttt 36017703

                                           
Query: 568      gggatcctcatcaaggtgataccttac 594
                 || || |||||||| || ||||||||
Sbjct: 36017702 agggtcttcatcaagatggtaccttac 36017676



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                            
Query: 602      ttccatactcgaacggtaccatcttttgatgcagtaataatcttctcagaatccggagtg 661
                |||||||||||||  ||||||||||| || || |||||||||| |||||||| | ||| |
Sbjct: 36017126 ttccatactcgaattgtaccatctttggaagctgtaataatctgctcagaattcagagcg 36017067

                       
Query: 662      aaacaca 668
                |||||||
Sbjct: 36017066 aaacaca 36017060



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                            
Query: 277      aggagctaaccacagtttcacctttttgtcgtccccacaacttgctaacacaaaagcagg 336
                ||||||||||||||| ||||||||||||||  | |||  | | ||||| |||||||||||
Sbjct: 36018812 aggagctaaccacagcttcacctttttgtccactccagcagtcgctaaaacaaaagcagg 36018753

                  
Query: 337      ag 338
                ||
Sbjct: 36018752 ag 36018751



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 343      accatttggaatagtccgtggagcccaagcaatgccag 380
                |||||||||||| || ||||||||||| ||||||||||
Sbjct: 36018455 accatttggaattgttcgtggagcccaggcaatgccag 36018418
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>gb|AY112246.1| Zea mays CL3465_-1 mRNA sequence
          Length = 581

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                        
Query: 442 ccattgcaacgtcgatccacttgtcacagccagaattttaccatc 486
           |||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct: 181 ccattgcaacgttgatccacttgttacagtcagaattttaccatc 225
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>emb|AL160033.21| Human DNA sequence from clone RP11-480K16 on chromosome 13 Contains
            the 5' end of a novel gene, a novel gene, the 3' end of
            the TUBGCP3 gene for tubulin gamma complex associated
            protein 3 and two CpG islands, complete sequence
          Length = 182362

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 328  aaaagcaggagcaccaccatttgg 351
            ||||||||||||||||||||||||
Sbjct: 4257 aaaagcaggagcaccaccatttgg 4280
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>emb|AL591069.5| Human DNA sequence from clone RP11-72O9 on chromosome 6q25.2-26 Contains
              the 3' end of the SSLC22A3 gene for solute carrier family
              22 (extraneuronal monoamine transporter), member 3
              (extraneuronal monoamine transporter solute carrier family
              22 (organic cation transporter), member 3(EMT, EMTh,
              OCT3)), the APOARGC gene for apolipoprotein (a) related
              gene C and a plasminogen (PLG) pseudogene, complete
              sequence
          Length = 162083

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 500    atgtgttcatacaggcaagta 520
              |||||||||||||||||||||
Sbjct: 124773 atgtgttcatacaggcaagta 124753
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>emb|AL591404.4| Mouse DNA sequence from clone RP23-394O9 on chromosome 11, complete
              sequence
          Length = 203613

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 225    cttgtagaggatgagcaggac 245
              |||||||||||||||||||||
Sbjct: 182353 cttgtagaggatgagcaggac 182333
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>dbj|AP003972.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-861E23, complete
              sequence
          Length = 181946

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 108    atctctttttctgtaactctc 128
              |||||||||||||||||||||
Sbjct: 104385 atctctttttctgtaactctc 104365
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>gb|AC152821.5| Mus musculus BAC clone RP24-366H21 from chromosome y, complete
            sequence
          Length = 179613

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 73   acaacagattcacagagaaa 92
            ||||||||||||||||||||
Sbjct: 1203 acaacagattcacagagaaa 1222
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>gb|AF178757.1| Anabaena PCC7120 phycobilisome rod structure gene cluster, partial
             sequence
          Length = 16341

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 304   gtcgtccccacaacttgctaacac 327
             ||||||||||||||||| ||||||
Sbjct: 15599 gtcgtccccacaacttggtaacac 15622
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 600     tattccatactcgaacggtaccatcttttgatgcag 635
               ||||||| |||||||| || ||||||||||| ||||
Sbjct: 1481741 tattccaaactcgaacagtgccatcttttgaagcag 1481706
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>gb|AC119406.6| Trypanosoma brucei chromosome 8 clone RPCI93-28L1, complete sequence
          Length = 134874

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    gctatctctttttctgtaac 124
              ||||||||||||||||||||
Sbjct: 117712 gctatctctttttctgtaac 117731
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>gb|AC092212.32| Trypanosoma brucei chromosome 8 clone RPCI93-10J17, complete sequence
          Length = 168741

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   gctatctctttttctgtaac 124
             ||||||||||||||||||||
Sbjct: 69952 gctatctctttttctgtaac 69971



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   gctatctctttttctgtaac 124
             ||||||||||||||||||||
Sbjct: 67326 gctatctctttttctgtaac 67345



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   gctatctctttttctgtaac 124
             ||||||||||||||||||||
Sbjct: 64565 gctatctctttttctgtaac 64584
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 105     gctatctctttttctgtaac 124
               ||||||||||||||||||||
Sbjct: 1164259 gctatctctttttctgtaac 1164240



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 105     gctatctctttttctgtaac 124
               ||||||||||||||||||||
Sbjct: 1161498 gctatctctttttctgtaac 1161479



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 105     gctatctctttttctgtaac 124
               ||||||||||||||||||||
Sbjct: 1158872 gctatctctttttctgtaac 1158853



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 105     gctatctctttttctgtaac 124
               ||||||||||||||||||||
Sbjct: 1044719 gctatctctttttctgtaac 1044738
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>gb|AC099596.6| Mus musculus chromosome 15, clone RP23-26P23, complete sequence
          Length = 210022

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 628    tgatgcagtaataatcttct 647
              ||||||||||||||||||||
Sbjct: 174559 tgatgcagtaataatcttct 174578
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>ref|XM_429124.1| PREDICTED: Gallus gallus similar to glutaredoxin (LOC431570), mRNA
          Length = 534

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  ttacttccagaaaacaacag 79
           ||||||||||||||||||||
Sbjct: 165 ttacttccagaaaacaacag 184
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>gb|AC119893.9| Mus musculus chromosome 1, clone RP24-225A6, complete sequence
          Length = 179453

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  cccttgtttctttttgttcc 220
            ||||||||||||||||||||
Sbjct: 9335 cccttgtttctttttgttcc 9354
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>gb|AC132270.3| Mus musculus BAC clone RP24-338C23 from chromosome 5, complete sequence
          Length = 145471

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   ggagcccaagcaatgccaga 381
             ||||||||||||||||||||
Sbjct: 36853 ggagcccaagcaatgccaga 36834
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>gb|AC139673.9| Mus musculus chromosome 1, clone RP23-280I2, complete sequence
          Length = 263505

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    cccttgtttctttttgttcc 220
              ||||||||||||||||||||
Sbjct: 209412 cccttgtttctttttgttcc 209431
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>gb|AC135808.4| Mus musculus BAC clone RP24-316N5 from chromosome Y, complete sequence
          Length = 149744

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     acaacagattcacagagaaa 92
              ||||||||||||||||||||
Sbjct: 116213 acaacagattcacagagaaa 116194
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>gb|AC144851.3| Mus musculus BAC clone RP24-329H15 from chromosome Y, complete sequence
          Length = 171646

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    acaacagattcacagagaaa 92
             ||||||||||||||||||||
Sbjct: 51999 acaacagattcacagagaaa 51980
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>ref|XM_824044.1| Trypanosoma brucei TREU927 SNF2 DNA repair protein (Tb11.01.2500)
           partial mRNA
          Length = 3636

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 294 tcacctttttgtcgtccccacaac 317
           ||||||| ||||||||||||||||
Sbjct: 870 tcaccttattgtcgtccccacaac 893
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>ref|XM_570541.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CND05450) partial mRNA
          Length = 1619

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 600 tattccatactcgaacggtaccatcttttgatgcag 635
           ||||||| |||||||| || ||||||||||| ||||
Sbjct: 808 tattccaaactcgaacagtgccatcttttgaagcag 773
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>gb|AC108797.8| Mus musculus chromosome 3, clone RP23-349M18, complete sequence
          Length = 208211

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   taaccacagtttcacctttt 302
             ||||||||||||||||||||
Sbjct: 43293 taaccacagtttcacctttt 43274
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>emb|AL161722.9| Human DNA sequence from clone RP11-497J7 on chromosome X Contains a
            melanoma antigen family B 4 pseudogene and a nuclear
            transcription factor Y, gamma (NFYC) pseudogene, complete
            sequence
          Length = 154594

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 552  aaactctcaaggttttggga 571
            ||||||||||||||||||||
Sbjct: 6148 aaactctcaaggttttggga 6129
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>gb|AC158907.2| Mus musculus chromosome 15, clone RP24-266D22, complete sequence
          Length = 146781

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 628   tgatgcagtaataatcttct 647
             ||||||||||||||||||||
Sbjct: 10923 tgatgcagtaataatcttct 10942
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>emb|Y09235.1|GGGRX G.gallus mRNA for glutaredoxin
          Length = 572

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  ttacttccagaaaacaacag 79
           ||||||||||||||||||||
Sbjct: 214 ttacttccagaaaacaacag 233
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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 469     agccagaattttaccatctg 488
               ||||||||||||||||||||
Sbjct: 3594848 agccagaattttaccatctg 3594867
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>gb|AC182763.2| Mus musculus BAC clone RP24-56N19 from chromosome y, complete sequence
          Length = 175755

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     acaacagattcacagagaaa 92
              ||||||||||||||||||||
Sbjct: 155452 acaacagattcacagagaaa 155433
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>gb|AC175491.3| Mus musculus BAC clone RP24-90O21 from chromosome y, complete sequence
          Length = 202657

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     acaacagattcacagagaaa 92
              ||||||||||||||||||||
Sbjct: 104375 acaacagattcacagagaaa 104356
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>gb|AC177799.3| Mus musculus BAC clone RP24-374O22 from chromosome y, complete sequence
          Length = 128487

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    acaacagattcacagagaaa 92
             ||||||||||||||||||||
Sbjct: 87579 acaacagattcacagagaaa 87598
to top
>gb|AF503335.1| Mus musculus strain 129/Sv gamma casein gene, complete cds
          Length = 30958

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   tgtagaggatgagcaggaca 246
             ||||||||||||||||||||
Sbjct: 11211 tgtagaggatgagcaggaca 11230
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>gb|AC116104.7| Mus musculus chromosome 5, clone RP23-18K20, complete sequence
          Length = 210459

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    aacttttaagttacttccagaaaa 73
             |||||||| |||||||||||||||
Sbjct: 71260 aacttttaggttacttccagaaaa 71237
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>gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete sequence
          Length = 163823

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   aatgctatctctttttctgt 121
             ||||||||||||||||||||
Sbjct: 91233 aatgctatctctttttctgt 91252
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>gb|AC074046.9|AC074046 Mus musculus 5 BAC RP23-440C1 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 182534

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   tgtagaggatgagcaggaca 246
             ||||||||||||||||||||
Sbjct: 73635 tgtagaggatgagcaggaca 73616
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>ref|NM_205160.1| Gallus gallus glutaredoxin (GRX), mRNA
          Length = 572

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  ttacttccagaaaacaacag 79
           ||||||||||||||||||||
Sbjct: 214 ttacttccagaaaacaacag 233
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 304    gtcgtccccacaacttgctaacac 327
              ||||||||||||||||| ||||||
Sbjct: 627876 gtcgtccccacaacttggtaacac 627899
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>emb|AJ291459.1|MMU291459 Mus musculus partial HSD17B7 gene for 17beta-hydroxysteroid
           dehydrogenase type 7, exon 1 and joined CDS
          Length = 3095

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 cccttgtttctttttgttcc 220
           ||||||||||||||||||||
Sbjct: 258 cccttgtttctttttgttcc 239
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>dbj|AP001977.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-248G21, complete
             sequences
          Length = 156957

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    aacttttaagttacttccagaaaa 73
             ||||||||| ||||||||||||||
Sbjct: 12438 aacttttaatttacttccagaaaa 12415
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>dbj|AP000664.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-40G4, complete
             sequences
          Length = 94779

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    aacttttaagttacttccagaaaa 73
             ||||||||| ||||||||||||||
Sbjct: 85592 aacttttaatttacttccagaaaa 85569
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>emb|CT737256.1| RP43-049D20, complete sequence
          Length = 138990

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 552    aaactctcaaggttttggga 571
              ||||||||||||||||||||
Sbjct: 124524 aaactctcaaggttttggga 124505
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>gb|M80435.1|ANARODCORA Anabaena sp. cpcF gene, 3' end; cpcG1, cpcG2, cpcG3, and cpcG4 genes,
            complete cds; and unknown ORF, 3' end
          Length = 3971

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 304  gtcgtccccacaacttgctaacac 327
            ||||||||||||||||| ||||||
Sbjct: 3229 gtcgtccccacaacttggtaacac 3252
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>emb|AL626776.15| Mouse DNA sequence from clone RP23-73N17 on chromosome 4, complete
            sequence
          Length = 144486

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 419  accacaccagtttctgcaca 438
            ||||||||||||||||||||
Sbjct: 7356 accacaccagtttctgcaca 7337


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,535,235
Number of Sequences: 3902068
Number of extensions: 6535235
Number of successful extensions: 124935
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124673
Number of HSP's gapped (non-prelim): 257
length of query: 668
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 645
effective length of database: 17,143,297,704
effective search space: 11057427019080
effective search space used: 11057427019080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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