ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14c15 |
|---|---|
| Clone Library Name | barley_pub |
>SUGT1_HUMAN (Q9Y2Z0) Suppressor of G2 allele of SKP1 homolog (Sgt1) (Putative| 40-6-3 protein) Length = 364 Score = 118 bits (296), Expect = 1e-26 Identities = 55/89 (61%), Positives = 73/89 (82%), Gaps = 1/89 (1%) Frame = -1 Query: 521 YPSSKS-KKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVESN 345 YPSS ++WDKL E+K++EK+EKL+GDAALN+ F++IYSD ++++RAM KSF+ES Sbjct: 276 YPSSSPYTRNWDKLVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESG 335 Query: 344 GTVLSTNWKDVGKKTVEGSPPDGMELKKW 258 GTVLSTNW DVGK+ VE +PPD ME KK+ Sbjct: 336 GTVLSTNWSDVGKRKVEINPPDDMEWKKY 364
>SUGT1_MOUSE (Q9CX34) Suppressor of G2 allele of SKP1 homolog| Length = 335 Score = 118 bits (295), Expect = 1e-26 Identities = 55/89 (61%), Positives = 73/89 (82%), Gaps = 1/89 (1%) Frame = -1 Query: 521 YPSSKS-KKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVESN 345 YPSS ++WDKL E+K++EK+EKL+GDAALNK F++IYSD ++++RAM KSF+ES Sbjct: 247 YPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESG 306 Query: 344 GTVLSTNWKDVGKKTVEGSPPDGMELKKW 258 GTVLSTNW DVGK+ VE +PPD ME K++ Sbjct: 307 GTVLSTNWSDVGKRKVEINPPDDMEWKQY 335
>SGT1_YEAST (Q08446) Protein SGT1 (Suppressor of G2 allele of SKP1)| Length = 395 Score = 100 bits (250), Expect = 2e-21 Identities = 52/105 (49%), Positives = 72/105 (68%), Gaps = 1/105 (0%) Frame = -1 Query: 569 APQKINVPAESAQRPSYPSSKSKK-DWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDA 393 A + ++ S +R SYPSS KK DW KL+ + +E DE+ + + FF+++Y+ A Sbjct: 297 ATRLLSAETASKERLSYPSSSKKKIDWSKLDID---EEADEEA---GSADSFFQKLYAGA 350 Query: 392 DEDMRRAMMKSFVESNGTVLSTNWKDVGKKTVEGSPPDGMELKKW 258 D D +RAMMKSF+ESNGT LST+W+DV K TV+ SPP+GME K W Sbjct: 351 DPDTKRAMMKSFIESNGTALSTDWEDVSKGTVKTSPPEGMEPKHW 395
>GIT7_SCHPO (O59709) Glucose insensitive transcription protein 7| Length = 379 Score = 97.8 bits (242), Expect = 2e-20 Identities = 56/109 (51%), Positives = 72/109 (66%), Gaps = 2/109 (1%) Frame = -1 Query: 578 KPKAPQKINVPAESAQRPSYP-SSKSK-KDWDKLEAEVKKQEKDEKLDGDAALNKFFREI 405 K A +NV A+ + S ++K+K KDWD L A++ E+DE G+AAL F+ + Sbjct: 273 KSPANNSVNVYAKDSNHSSASGNTKNKAKDWDSL-AKLADLEEDEPT-GEAALANLFQNL 330 Query: 404 YSDADEDMRRAMMKSFVESNGTVLSTNWKDVGKKTVEGSPPDGMELKKW 258 Y +AD+D RRAMMKS+ ESNGT LSTNWKDV KT E PP GME KK+ Sbjct: 331 YKNADDDTRRAMMKSYTESNGTALSTNWKDVKSKTFETKPPQGMEPKKF 379
>CYBP_HUMAN (Q9HB71) Calcyclin-binding protein (CacyBP) (hCacyBP)| (Siah-interacting protein) (S100A6-binding protein) Length = 228 Score = 39.3 bits (90), Expect = 0.008 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 6/55 (10%) Frame = -1 Query: 494 WDKL---EAEVKKQEK---DEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVES 348 WD L E E K++EK D + D L ++IY D D+DM+R + K++VES Sbjct: 163 WDYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVES 217
>CYBP_MOUSE (Q9CXW3) Calcyclin-binding protein (CacyBP) (Siah-interacting| protein) Length = 229 Score = 39.3 bits (90), Expect = 0.008 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 6/55 (10%) Frame = -1 Query: 494 WDKL---EAEVKKQEK---DEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVES 348 WD L E E K++EK D + D L ++IY D D+DM+R + K++VES Sbjct: 164 WDYLTQVEKECKEKEKPSYDTEADPSEGLMNVLKKIYEDGDDDMKRTINKAWVES 218
>CYBP_PONPY (Q5R6Z8) Calcyclin-binding protein (CacyBP)| Length = 228 Score = 38.5 bits (88), Expect = 0.014 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 6/55 (10%) Frame = -1 Query: 494 WDKL---EAEVKKQEK---DEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVES 348 WD L E E K++EK D + D L ++IY D D+DM+R + K++VES Sbjct: 163 WDYLTQVEKERKEKEKPSYDAETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVES 217
>HS90A_CHICK (P11501) Heat shock protein HSP 90-alpha| Length = 728 Score = 32.3 bits (72), Expect = 1.0 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -1 Query: 542 ESAQRPSYPSSKSKKDWDKLEAE-VKKQEKDEKLDGDAALNKFFREIYSDADE 387 E+ ++ K +K DK E E V E++EK DGD K +E Y D +E Sbjct: 233 EAEEKEEEKEEKEEKTEDKPEIEDVGSDEEEEKKDGDKKKKKKIKEKYIDEEE 285
>ROM2_YEAST (P51862) RHO1 GDP-GTP exchange protein 2| Length = 1356 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%) Frame = -1 Query: 578 KPKAPQKINVPA----ESAQRPSYPSSKSKKDWDKL-EAEVKKQE 459 KP K N+ + ++PS+ SS SK+DW+ L + E+K+QE Sbjct: 618 KPNGGLKRNISMALDDDDEEKPSWTSSVSKEDWENLPKKEIKRQE 662
>DBP5_CANAL (Q5AJD0) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-)| Length = 540 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = -1 Query: 548 PAESAQRPSYPSSKSKKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADED 384 P E + P +K D DK + + K + KDE DGD A + E+ ++ E+ Sbjct: 57 PEEKKEVVEEPENKEIND-DKKDEDKKDESKDEVKDGDGAKEETKEEVKEESKEE 110
>T2C2_PBCV1 (P31117) Type II restriction enzyme CviAII (EC 3.1.21.4)| (Endonuclease CviAII) (R.CviAII) Length = 342 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/67 (31%), Positives = 34/67 (50%) Frame = -1 Query: 506 SKKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVESNGTVLST 327 SK +DK+ +E KK EK+ + + F +IY + + + S + NG VL T Sbjct: 68 SKGIFDKIRSENKKYEKNHQKLTKKMVLDIFSKIYKEDSRKSKTQCVVSEKKDNGGVLLT 127 Query: 326 NWKDVGK 306 +D+GK Sbjct: 128 --EDLGK 132
>IF2_PASMU (P57873) Translation initiation factor IF-2| Length = 833 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = -1 Query: 563 QKINVPAESAQRPSYPSSKSKKDWDKLEAEVKKQEKDEK 447 +K VP ++AQ+ K+K++ D+L AE K++ +EK Sbjct: 43 KKRTVPTDAAQKAEEARLKAKQEADRLAAEKAKKDAEEK 81
>TDX_TRYBR (Q26695) Thioredoxin peroxidase (EC 1.11.1.15) (Peroxiredoxin)| (Thioredoxin-dependent peroxide reductase) (Thiol-specific antioxidant protein) Length = 199 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -1 Query: 398 DADEDMRRAMMKSFVESNGTVLSTNWKDVGKKTVEGSP 285 + DE +R FVE +G V NWK G KT++ P Sbjct: 152 NVDETLRLVKAFQFVEKHGEVCPANWKP-GSKTMKADP 188
>RENT2_HUMAN (Q9HAU5) Regulator of nonsense transcripts 2 (Nonsense mRNA| reducing factor 2) (Up-frameshift suppressor 2 homolog) (hUpf2) Length = 1272 Score = 30.8 bits (68), Expect = 3.0 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = -1 Query: 572 KAPQKINVPAESAQRPSYPSSKSKKDWDKLEA--EVKKQEKDEKLDGDAALNKFFREIYS 399 KAP+ E +R + KKD +K++A E KK+E++EK K E Sbjct: 51 KAPEDKKKRLEDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAK 110 Query: 398 DADEDMRRAMMKSFVES 348 E+ A MK ES Sbjct: 111 RQQEEEAAAQMKEKEES 127
>KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1) Length = 523 Score = 30.4 bits (67), Expect = 3.9 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -1 Query: 467 KQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVESNGTVLSTNWKDV 312 K K E ++GDA K R +Y DED+ + + ++S V W DV Sbjct: 193 KSNKAESMNGDAEDGKSKRGLYEGPDEDLAAMLERDVLDSTPGV---RWDDV 241
>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein| 89) Length = 8081 Score = 30.4 bits (67), Expect = 3.9 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%) Frame = -1 Query: 578 KPKAPQKINV----PAESAQRPSYPSSKSKKDWDKLEAEVKKQEKDEK 447 K K+P+K+ P + + P P+S +KK +++++ KK++ EK Sbjct: 1563 KEKSPEKVEEKPASPTKKEKSPEKPASPTKKSENEVKSPTKKEKSPEK 1610
>SYTC_CAEEL (P52709) Threonyl-tRNA synthetase, cytoplasmic (EC 6.1.1.3)| (Threonine--tRNA ligase) (ThrRS) Length = 725 Score = 30.0 bits (66), Expect = 5.0 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Frame = -1 Query: 545 AESAQRP---SYPSSKSKKDWDKLEAEVKKQE 459 AES QR S+P SK K+W KL+ E K++ Sbjct: 290 AESLQRLYGISFPDSKQLKEWQKLQEEAAKRD 321
>YOS1_SCHPO (P87319) Hypothetical protein C21C3.01c in chromosome II| Length = 3011 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/71 (25%), Positives = 35/71 (49%) Frame = -1 Query: 563 QKINVPAESAQRPSYPSSKSKKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADED 384 + + + E +P +K+ D+LE + ++ K E+LD L K FRE ++ + Sbjct: 76 KSLTINIEDIYLSIHPQAKNSLTRDELE-QSQQALKQEQLDSFEILRKNFRETLEESSSN 134 Query: 383 MRRAMMKSFVE 351 + +SF+E Sbjct: 135 PNISRKQSFIE 145
>CEND1_MOUSE (Q8BZ05) Centaurin-delta 1 (Cnt-d1)| Length = 1703 Score = 30.0 bits (66), Expect = 5.0 Identities = 9/25 (36%), Positives = 13/25 (52%) Frame = -3 Query: 84 ATVGNGVSPYLCICGMEVQNVRCNW 10 +T+ N +SPY C G +C W Sbjct: 462 STISNAISPYACFYGSSAAKEKCGW 486
>HS90A_HUMAN (P07900) Heat shock protein HSP 90-alpha (HSP 86) (NY-REN-38| antigen) Length = 731 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = -1 Query: 542 ESAQRPSYPSSKSKKDWDKLEAE-VKKQEKDEKLDGDAALNKFFREIYSDADE 387 E + + K+ DK E E V E++EK DGD K +E Y D +E Sbjct: 236 EKEDKEEEKEKEEKESEDKPEIEDVGSDEEEEKKDGDKKKKKKIKEKYIDQEE 288
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 29.6 bits (65), Expect = 6.6 Identities = 21/65 (32%), Positives = 27/65 (41%) Frame = -1 Query: 566 PQKINVPAESAQRPSYPSSKSKKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADE 387 P K ++ AQ+PS P K D E+KK EK +K+ G K E Sbjct: 83 PAKPRAWSKHAQKPSQPKQPPK---DSTTPEIKKDEKKKKVAGQLEKLKEDTEFQEFLSV 139 Query: 386 DMRRA 372 RRA Sbjct: 140 HQRRA 144
>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (mPER) (M-Rigui) Length = 1291 Score = 29.6 bits (65), Expect = 6.6 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 8/44 (18%) Frame = +2 Query: 392 QHHCKFHGKTCSMQHHR--------QVSHPSPVFSLQPQAYPSP 499 +HHC+ K HH+ VSHPSPV S P +P P Sbjct: 829 RHHCRSKAKRSRHHHHQTPRPETPCYVSHPSPVPSSGP--WPPP 870
>PRIL_METBF (Q46E38) Probable DNA primase large subunit (EC 2.7.7.-)| Length = 413 Score = 29.6 bits (65), Expect = 6.6 Identities = 26/104 (25%), Positives = 43/104 (41%) Frame = -1 Query: 581 GKPKAPQKINVPAESAQRPSYPSSKSKKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIY 402 GK + +KIN P ++ Y +K K E E +K+EK+EK + E Sbjct: 312 GKDRLCEKINHPLAYYEKKIYLKNKEK------EMEKEKEEKEEKEKQEEKK----EEEE 361 Query: 401 SDADEDMRRAMMKSFVESNGTVLSTNWKDVGKKTVEGSPPDGME 270 + E++++ K E G + K K+ E +G E Sbjct: 362 KEKQEEIKKKKKKEKQEEKGKKIKEGKKRERKQEKETKRREGKE 405
>ERB1_YEAST (Q04660) Eukaryotic ribosome biogenesis protein 1| Length = 807 Score = 29.6 bits (65), Expect = 6.6 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 8/52 (15%) Frame = -1 Query: 515 SSKSKKDWDKLEAEVKKQEK--------DEKLDGDAALNKFFREIYSDADED 384 +S+S +D D+ E+ V+++E D D DA LNK E D +ED Sbjct: 43 ASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEED 94
>MMTA2_MOUSE (Q99LX5) Multiple myeloma tumor-associated protein 2 homolog| Length = 260 Score = 29.6 bits (65), Expect = 6.6 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -1 Query: 578 KPKAPQKINVPAESAQRPSYPSSKSKKDWDKLEAEVKKQEKDEKLDGDA 432 KP+A K+ AES ++ K KK K + KK++K+ K + D+ Sbjct: 168 KPRAEDKVEPDAESHKKSKKEKKKKKK---KHKKHKKKKDKEHKREADS 213
>HS90A_PIG (O02705) Heat shock protein HSP 90-alpha (HSP 86)| Length = 732 Score = 29.6 bits (65), Expect = 6.6 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = -1 Query: 542 ESAQRPSYPSSKSKKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADE 387 E + K +D ++E +E++EK DGD K +E Y D +E Sbjct: 238 EDKEEEKEKEEKESEDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEE 289
>SIRT2_MOUSE (Q8VDQ8) NAD-dependent deacetylase sirtuin-2 (EC 3.5.1.-)| (SIR2-like protein 2) (mSIR2L2) Length = 389 Score = 29.3 bits (64), Expect = 8.6 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = +2 Query: 365 SSLLYAYLHQHHCKFHGKTCSMQHHRQVSHPSPVFSLQPQAYPSPF 502 S+ LYA L ++H + + + ++ HP P F+L + YP F Sbjct: 100 STGLYANLEKYHLPYPEAIFEISYFKK--HPEPFFALAKELYPGQF 143
>MMTA2_RAT (Q5M9I6) Multiple myeloma tumor-associated protein 2 homolog| Length = 260 Score = 29.3 bits (64), Expect = 8.6 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -1 Query: 578 KPKAPQKINVPAESAQRPSYPSSKSKKDWDKLEAEVKKQEKDEKLDGDA 432 KP+A K + AES ++ K KK K + KK++K+ K + D+ Sbjct: 168 KPRAEDKAELDAESHKKSKKEKKKKKK---KHKKHKKKKDKEHKREADS 213 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,182,328 Number of Sequences: 219361 Number of extensions: 1742995 Number of successful extensions: 5513 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5237 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5499 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
