ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14c15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF439974.1| Hordeum vulgare SGT1 (SGT1) mRNA, complete cds 1122 0.0
2ref|NM_192876.1| Oryza sativa (japonica cultivar-group), predic... 246 7e-62
3gb|AF192467.1|AF192467 Oryza sativa Sgt1 (Sgt1) mRNA, complete cds 246 7e-62
4dbj|AK059268.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 7e-62
5gb|AY103953.1| Zea mays PCO098564 mRNA sequence 232 1e-57
6gb|AY899280.1| Capsicum annuum Sgt1b mRNA, complete cds 143 7e-31
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
8dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
9gb|AY899199.1| Nicotiana benthamiana SGT1 mRNA, complete cds 125 2e-25
10gb|AF494083.1| Nicotiana benthamiana SGT1 mRNA, complete cds 119 1e-23
11emb|AJ620882.1| Brassica oleracea mRNA for SGT1-like protein (sg... 88 4e-14
12emb|AJ620883.1| Brassica oleracea mRNA for SGT1-like protein (sg... 80 9e-12
13ref|NM_117197.2| Arabidopsis thaliana SGT1B AT4G11260 (SGT1B) mR... 72 2e-09
14gb|AF439976.1| Arabidopsis thaliana SGT1b (SGT1b) mRNA, complete... 72 2e-09
15gb|AY150487.1| Arabidopsis thaliana unknown protein (At4g11260) ... 72 2e-09
16gb|AF370229.1| Arabidopsis thaliana unknown protein (At4g11260) ... 72 2e-09
17emb|AJ318019.1|ATH318019 Arabidopsis thaliana mRNA for SGT1-like... 72 2e-09
18gb|AF428340.1|AF428340 Arabidopsis thaliana AT4g11260/F8L21_50 m... 72 2e-09
19gb|AY615272.1| Solanum tuberosum SGT1 gene, complete cds 72 2e-09
20emb|BX827155.1|CNS0A3LR Arabidopsis thaliana Full-length cDNA Co... 72 2e-09
21gb|AY085464.1| Arabidopsis thaliana clone 152712 mRNA, complete ... 72 2e-09
22emb|AJ251317.1|RID251317 Rubus idaeus partial mRNA for putative ... 72 2e-09
23emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, ... 54 5e-04
24emb|AL096882.2|ATF8L21 Arabidopsis thaliana DNA chromosome 4, BA... 54 5e-04
25ref|NM_001036627.1| Arabidopsis thaliana SGT1A AT4G23570 (SGT1A)... 50 0.008
26ref|NM_179098.1| Arabidopsis thaliana SGT1A AT4G23570 (SGT1A) tr... 50 0.008
27ref|NM_118488.4| Arabidopsis thaliana SGT1A AT4G23570 (SGT1A) tr... 50 0.008
28gb|AF439975.1| Arabidopsis thaliana SGT1a (SGT1a) mRNA, complete... 50 0.008
29gb|AY096395.1| Arabidopsis thaliana putative phosphatase (At4g23... 50 0.008
30gb|AY063978.1| Arabidopsis thaliana putative phosphatase (At4g23... 50 0.008
31emb|BX827330.1|CNS0A2VG Arabidopsis thaliana Full-length cDNA Co... 50 0.008
32emb|AJ318020.1|ATH318020 Arabidopsis thaliana partial mRNA for S... 50 0.008
33emb|CR931763.8| Zebrafish DNA sequence from clone DKEY-65B12 in ... 48 0.032
34emb|CR848794.6| Zebrafish DNA sequence from clone DKEYP-11C8 in ... 48 0.032
35gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence 48 0.032
36gb|AC097227.3| Papio anubis clone RP41-327F23, complete sequence 48 0.032
37emb|CT025844.1| Medicago truncatula chromosome 5 clone mte1-41h1... 46 0.13
38gb|AC138791.3| Mus musculus BAC clone RP23-222G6 from chromosome... 42 2.0
39gb|BC005456.1| Mus musculus zinc finger protein 111, mRNA (cDNA ... 42 2.0
40gb|BC096771.1| Mus musculus zinc finger protein 114, mRNA (cDNA ... 42 2.0
41emb|Z84719.1|HS340G1 Human DNA sequence from clone RP3-340G1 on ... 42 2.0
42gb|AF167318.1| Mus musculus zinc finger protein ZFP111 mRNA, com... 42 2.0
43gb|AF167316.1| Mus musculus zinc finger protein ZFP109 mRNA, com... 42 2.0
44emb|AL161559.2|ATCHRIV59 Arabidopsis thaliana DNA chromosome 4, ... 42 2.0
45emb|AL035394.1|ATF9D16 Arabidopsis thaliana DNA chromosome 4, BA... 42 2.0
46dbj|AK139475.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 42 2.0
47gb|AC122493.4| Mus musculus BAC clone RP24-392M11 from 3, comple... 42 2.0
48ref|NM_001029933.1| Mus musculus zinc finger protein 114 (Zfp114... 42 2.0
49ref|NM_020262.1| Mus musculus zinc finger protein 109 (Zfp109), ... 42 2.0
50ref|NM_019940.1| Mus musculus zinc finger protein 111 (Zfp111), ... 42 2.0
51gb|AC133938.4| Mus musculus BAC clone RP23-399J17 from 3, comple... 42 2.0
52gb|AC147025.2| Pan troglodytes BAC clone RP43-92C7 from 7, compl... 40 7.9
53emb|AL110499.1|CEY62F5A Caenorhabditis elegans YAC Y62F5A, compl... 40 7.9
54gb|AC004906.3| Homo sapiens PAC clone RP5-852O24 from 7, complet... 40 7.9
55emb|AL138956.17| Human DNA sequence from clone RP11-16D22 on chr... 40 7.9
56emb|AL157368.7| Human DNA sequence from clone RP11-520L19 on chr... 40 7.9
57emb|Z68144.1|SPAC3H1 S. pombe chromosome I cosmid c3H1 40 7.9
58gb|AY355338.1| Lilium longiflorum pollen-specific SGT1 mRNA, com... 40 7.9
59emb|AL929272.10| Mouse DNA sequence from clone RP23-69H10 on chr... 40 7.9
60dbj|AB087258.1| Histophilus somni ibpB, ibpA, tbpA genes for out... 40 7.9
61gb|AC115676.1| Homo sapiens 12 BAC RP11-656E20 (Roswell Park Can... 40 7.9
62gb|AC006841.7| Arabidopsis thaliana chromosome 2 clone F3K23 map... 40 7.9
63gb|AC183494.1| Brassica oleracea Contig C, complete sequence 40 7.9
64gb|AC010947.6| Homo sapiens chromosome 18, clone RP11-25L3, comp... 40 7.9
65ref|NM_001018987.1| Schizosaccharomyces pombe 972h- hypothetical... 40 7.9
66ref|NM_064061.3| Caenorhabditis elegans AGEing alteration family... 40 7.9
67gb|AC010904.13| Homo sapiens BAC clone RP11-557L19 from 2, compl... 40 7.9
68gb|U56101.1|CEU56101 Caenorhabditis elegans AGE-1 mRNA, partial cds 40 7.9
69gb|AC172870.1| Brassica rapa subsp. pekinensis clone KBrH004A06,... 40 7.9
70emb|AL049873.3|CNS0000T Human chromosome 14 DNA sequence BAC R-1... 40 7.9 
>gb|AF439974.1| Hordeum vulgare SGT1 (SGT1) mRNA, complete cds
          Length = 1409

 Score = 1122 bits (566), Expect = 0.0
 Identities = 579/582 (99%), Gaps = 1/582 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    agtcttgcc-ccagttacaacggacgttttgcacttccataccacagatgcacaggtatg 59
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 agtcttgccaccagttacaacggacgttttgcacttccataccacagatgcacaggtatg 1320

                                                                        
Query: 60   ggcttactccattaccaactgtagctcgcaaaactaggataagtacttaaaagctaacct 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 ggcttactccattaccaactgtagctcgcaaaactaggataagtacttaaaagctaacct 1260

                                                                        
Query: 120  gccacgcaaacagcttacaaatacggaaacagaatgaagacacacataatccgaccaaca 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 gccacgcaaacagcttacaaatacggaaacagaatgaagacacacataatccgaccaaca 1200

                                                                        
Query: 180  ttgatttgcaagtctgcagccatgttaacacttacgaccaggatttacaacatggatgat 239
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1199 ttgatttgcaagtctgcagccatgttaacactcacgaccaggatttacaacatggatgat 1140

                                                                        
Query: 240  ctggtttcattaatactcccacttcttgagctccattccatcaggagggcttccttcaac 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 ctggtttcattaatactcccacttcttgagctccattccatcaggagggcttccttcaac 1080

                                                                        
Query: 300  cgtctttttcccgacatctttccagttggttgagagaacggttccattagactccacaaa 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 cgtctttttcccgacatctttccagttggttgagagaacggttccattagactccacaaa 1020

                                                                        
Query: 360  ggacttcatcattgctctacgcatatcttcatcagcatcactgtaaatttcacggaaaaa 419
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 agacttcatcattgctctacgcatatcttcatcagcatcactgtaaatttcacggaaaaa 960

                                                                        
Query: 420  cttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcacttcagc 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  cttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcacttcagc 900

                                                                        
Query: 480  ctcaagcttatcccagtcctttttggattttgatgaaggataagatggcctctgggctga 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899  ctcaagcttatcccagtcctttttggattttgatgaaggataagatggcctctgggctga 840

                                                      
Query: 540  ttcagctggtacatttatcttctgaggagcctttggtttacc 581
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839  ttcagctggtacatttatcttctgaggagcctttggtttacc 798
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>ref|NM_192876.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score =  246 bits (124), Expect = 7e-62
 Identities = 253/296 (85%)
 Strand = Plus / Minus

                                                                        
Query: 253  tactcccacttcttgagctccattccatcaggagggcttccttcaaccgtctttttcccg 312
            |||||||| ||||| |||||||| |||||||| |||||||| || ||| ||||    || 
Sbjct: 1100 tactcccatttcttaagctccatcccatcaggtgggcttccctctaccttcttcgagcca 1041

                                                                        
Query: 313  acatctttccagttggttgagagaacggttccattagactccacaaaggacttcatcatt 372
            ||||||||||| ||||| || ||||| || || ||||| || ||||| || |||||||||
Sbjct: 1040 acatctttccaattggtcgacagaacagtaccgttagattcaacaaaagatttcatcatt 981

                                                                        
Query: 373  gctctacgcatatcttcatcagcatcactgtaaatttcacggaaaaacttgttcaatgca 432
            ||||  ||||| |||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 980  gctcgtcgcatgtcttcatcagcatcactgtagatgtcacggaaaaatttgttcaatgca 921

                                                                        
Query: 433  gcatcaccgtcaagtttctcatccttctcctgttttttcacttcagcctcaagcttatcc 492
            ||||| || ||||| ||||| ||||||||||  ||||| |||||||| || || ||||||
Sbjct: 920  gcatcgccttcaagcttctcctccttctcctcctttttaacttcagcttccagtttatcc 861

                                                                    
Query: 493  cagtcctttttggattttgatgaaggataagatggcctctgggctgattcagctgg 548
            ||||| || ||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 860  cagtctttcttggattttgaggaaggatatgatggcctctgggccgattcagctgg 805
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>gb|AF192467.1|AF192467 Oryza sativa Sgt1 (Sgt1) mRNA, complete cds
          Length = 1222

 Score =  246 bits (124), Expect = 7e-62
 Identities = 253/296 (85%)
 Strand = Plus / Minus

                                                                        
Query: 253  tactcccacttcttgagctccattccatcaggagggcttccttcaaccgtctttttcccg 312
            |||||||| ||||| |||||||| |||||||| |||||||| || ||| ||||    || 
Sbjct: 1153 tactcccatttcttaagctccatcccatcaggtgggcttccctctaccttcttcgagcca 1094

                                                                        
Query: 313  acatctttccagttggttgagagaacggttccattagactccacaaaggacttcatcatt 372
            ||||||||||| ||||| || ||||| || || ||||| || ||||| || |||||||||
Sbjct: 1093 acatctttccaattggtcgacagaacagtaccgttagattcaacaaaagatttcatcatt 1034

                                                                        
Query: 373  gctctacgcatatcttcatcagcatcactgtaaatttcacggaaaaacttgttcaatgca 432
            ||||  ||||| |||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 1033 gctcgtcgcatgtcttcatcagcatcactgtagatgtcacggaaaaatttgttcaatgca 974

                                                                        
Query: 433  gcatcaccgtcaagtttctcatccttctcctgttttttcacttcagcctcaagcttatcc 492
            ||||| || ||||| ||||| ||||||||||  ||||| |||||||| || || ||||||
Sbjct: 973  gcatcgccttcaagcttctcctccttctcctcctttttaacttcagcttccagtttatcc 914

                                                                    
Query: 493  cagtcctttttggattttgatgaaggataagatggcctctgggctgattcagctgg 548
            ||||| || ||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 913  cagtctttcttggattttgaggaaggatatgatggcctctgggccgattcagctgg 858
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>dbj|AK059268.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B06, full
           insert sequence
          Length = 582

 Score =  246 bits (124), Expect = 7e-62
 Identities = 253/296 (85%)
 Strand = Plus / Minus

                                                                       
Query: 253 tactcccacttcttgagctccattccatcaggagggcttccttcaaccgtctttttcccg 312
           |||||||| ||||| |||||||| |||||||| |||||||| || ||| ||||    || 
Sbjct: 354 tactcccatttcttaagctccatcccatcaggtgggcttccctctaccttcttcgagcca 295

                                                                       
Query: 313 acatctttccagttggttgagagaacggttccattagactccacaaaggacttcatcatt 372
           ||||||||||| ||||| || ||||| || || ||||| || ||||| || |||||||||
Sbjct: 294 acatctttccaattggtcgacagaacagtaccgttagattcaacaaaagatttcatcatt 235

                                                                       
Query: 373 gctctacgcatatcttcatcagcatcactgtaaatttcacggaaaaacttgttcaatgca 432
           ||||  ||||| |||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 234 gctcgtcgcatgtcttcatcagcatcactgtagatgtcacggaaaaatttgttcaatgca 175

                                                                       
Query: 433 gcatcaccgtcaagtttctcatccttctcctgttttttcacttcagcctcaagcttatcc 492
           ||||| || ||||| ||||| ||||||||||  ||||| |||||||| || || ||||||
Sbjct: 174 gcatcgccttcaagcttctcctccttctcctcctttttaacttcagcttccagtttatcc 115

                                                                   
Query: 493 cagtcctttttggattttgatgaaggataagatggcctctgggctgattcagctgg 548
           ||||| || ||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 114 cagtctttcttggattttgaggaaggatatgatggcctctgggccgattcagctgg 59
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>gb|AY103953.1| Zea mays PCO098564 mRNA sequence
          Length = 1646

 Score =  232 bits (117), Expect = 1e-57
 Identities = 222/257 (86%)
 Strand = Plus / Minus

                                                                        
Query: 256  tcccacttcttgagctccattccatcaggagggcttccttcaaccgtctttttcccgaca 315
            |||||||||||||||||||| |||||||| ||||| ||||| ||| |||||   || |||
Sbjct: 1279 tcccacttcttgagctccataccatcaggggggctcccttctaccttctttgctccaaca 1220

                                                                        
Query: 316  tctttccagttggttgagagaacggttccattagactccacaaaggacttcatcattgct 375
            |||||||| |||||||||||||| || ||||| || ||||| || ||||||||||| || 
Sbjct: 1219 tctttccaattggttgagagaacagtgccatttgattccacgaatgacttcatcatggcc 1160

                                                                        
Query: 376  ctacgcatatcttcatcagcatcactgtaaatttcacggaaaaacttgttcaatgcagca 435
            || ||||||||||||||||||||  |||| || |||||||| ||||||||||||||||||
Sbjct: 1159 ctccgcatatcttcatcagcatccttgtagatatcacggaagaacttgttcaatgcagca 1100

                                                                        
Query: 436  tcaccgtcaagtttctcatccttctcctgttttttcacttcagcctcaagcttatcccag 495
            ||||| |||||||| || ||||||||||  ||||| |||||||| || || |||||||||
Sbjct: 1099 tcaccttcaagtttttcttccttctcctccttttttacttcagcttccagtttatcccag 1040

                             
Query: 496  tcctttttggattttga 512
            |||||||| || |||||
Sbjct: 1039 tccttttttgactttga 1023
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>gb|AY899280.1| Capsicum annuum Sgt1b mRNA, complete cds
          Length = 1416

 Score =  143 bits (72), Expect = 7e-31
 Identities = 198/240 (82%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctcccacttcttgagctccattccatcaggagggcttccttcaaccgtctttttcccgac 314
            |||||| ||||| | |||||| ||||| |||||||||||||||||| ||||| | || ||
Sbjct: 1199 ctcccatttcttcaactccatgccatccggagggcttccttcaaccttctttgtgccaac 1140

                                                                        
Query: 315  atctttccagttggttgagagaacggttccattagactccacaaaggacttcatcattgc 374
             ||||||||||| || || ||||| || |||||||| ||||||||||| |||||||| ||
Sbjct: 1139 ttctttccagtttgtcgacagaacagtcccattagattccacaaaggatttcatcatggc 1080

                                                                        
Query: 375  tctacgcatatcttcatcagcatcactgtaaatttcacggaaaaacttgttcaatgcagc 434
            ||| |   | || || ||||||||  ||||||| || |||||||| ||||||||||||||
Sbjct: 1079 tcttctggtgtcctcgtcagcatctttgtaaatgtctcggaaaaatttgttcaatgcagc 1020

                                                                        
Query: 435  atcaccgtcaagtttctcatccttctcctgttttttcacttcagcctcaagcttatccca 494
            ||| || || | ||| ||||| || |||| ||||||||||| ||| || || ||||||||
Sbjct: 1019 atctccatccaatttttcatctttttcctcttttttcacttgagcttctagtttatccca 960
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  127 bits (64), Expect = 4e-26
 Identities = 100/112 (89%)
 Strand = Plus / Minus

                                                                            
Query: 355      acaaaggacttcatcattgctctacgcatatcttcatcagcatcactgtaaatttcacgg 414
                ||||| || |||||||||||||  ||||| |||||||||||||||||||| || ||||||
Sbjct: 24938461 acaaaagatttcatcattgctcgtcgcatgtcttcatcagcatcactgtagatgtcacgg 24938402

                                                                    
Query: 415      aaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgtt 466
                ||||| ||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct: 24938401 aaaaatttgttcaatgcagcatcgccttcaagcttctcctccttctcctgtt 24938350



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                            
Query: 466      tttttcacttcagcctcaagcttatcccagtcctttttggattttgatgaaggataagat 525
                ||||| |||||||| || || ||||||||||| || ||||||||||| |||||||| |||
Sbjct: 24938254 tttttaacttcagcttccagtttatcccagtctttcttggattttgaggaaggatatgat 24938195

                                      
Query: 526      ggcctctgggctgattcagctg 547
                ||||||||||| ||||||||||
Sbjct: 24938194 ggcctctgggccgattcagctg 24938173



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                            
Query: 253      tactcccacttcttgagctccattccatcaggagggcttccttcaaccgtctttttcccg 312
                |||||||| ||||| |||||||| |||||||| |||||||| || ||| ||||    || 
Sbjct: 24938682 tactcccatttcttaagctccatcccatcaggtgggcttccctctaccttcttcgagcca 24938623

                                          
Query: 313      acatctttccagttggttgagagaac 338
                ||||||||||| ||||| || |||||
Sbjct: 24938622 acatctttccaattggtcgacagaac 24938597
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>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0006C01
          Length = 153865

 Score =  127 bits (64), Expect = 4e-26
 Identities = 100/112 (89%)
 Strand = Plus / Minus

                                                                         
Query: 355   acaaaggacttcatcattgctctacgcatatcttcatcagcatcactgtaaatttcacgg 414
             ||||| || |||||||||||||  ||||| |||||||||||||||||||| || ||||||
Sbjct: 10984 acaaaagatttcatcattgctcgtcgcatgtcttcatcagcatcactgtagatgtcacgg 10925

                                                                 
Query: 415   aaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgtt 466
             ||||| ||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct: 10924 aaaaatttgttcaatgcagcatcgccttcaagcttctcctccttctcctgtt 10873



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                         
Query: 466   tttttcacttcagcctcaagcttatcccagtcctttttggattttgatgaaggataagat 525
             ||||| |||||||| || || ||||||||||| || ||||||||||| |||||||| |||
Sbjct: 10777 tttttaacttcagcttccagtttatcccagtctttcttggattttgaggaaggatatgat 10718

                                   
Query: 526   ggcctctgggctgattcagctg 547
             ||||||||||| ||||||||||
Sbjct: 10717 ggcctctgggccgattcagctg 10696



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                         
Query: 253   tactcccacttcttgagctccattccatcaggagggcttccttcaaccgtctttttcccg 312
             |||||||| ||||| |||||||| |||||||| |||||||| || ||| ||||    || 
Sbjct: 11205 tactcccatttcttaagctccatcccatcaggtgggcttccctctaccttcttcgagcca 11146

                                       
Query: 313   acatctttccagttggttgagagaac 338
             ||||||||||| ||||| || |||||
Sbjct: 11145 acatctttccaattggtcgacagaac 11120
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>gb|AY899199.1| Nicotiana benthamiana SGT1 mRNA, complete cds
          Length = 1113

 Score =  125 bits (63), Expect = 2e-25
 Identities = 186/227 (81%)
 Strand = Plus / Minus

                                                                        
Query: 256  tcccacttcttgagctccattccatcaggagggcttccttcaaccgtctttttcccgaca 315
            ||||| ||||| |||||||| ||||| |||||||||||||| ||| |||||   ||||| 
Sbjct: 1106 tcccatttcttcagctccatgccatctggagggcttccttctaccttctttgcaccgact 1047

                                                                        
Query: 316  tctttccagttggttgagagaacggttccattagactccacaaaggacttcatcattgct 375
            ||||||||||| || || ||||| || |||||||| ||||||||||| |||||||| |||
Sbjct: 1046 tctttccagtttgtagacagaacagtcccattagattccacaaaggatttcatcatggct 987

                                                                        
Query: 376  ctacgcatatcttcatcagcatcactgtaaatttcacggaaaaacttgttcaatgcagca 435
            || |   | || ||||| |||||  ||||||| || |||||||| ||||||||||| |||
Sbjct: 986  cttctggtgtcctcatcggcatctttgtaaatgtctcggaaaaatttgttcaatgctgca 927

                                                           
Query: 436  tcaccgtcaagtttctcatccttctcctgttttttcacttcagcctc 482
            || || || | ||| || || || ||||  |||||||||||||||||
Sbjct: 926  tctccatccaatttttcgtctttttcctcctttttcacttcagcctc 880
to top
>gb|AF494083.1| Nicotiana benthamiana SGT1 mRNA, complete cds
          Length = 1113

 Score =  119 bits (60), Expect = 1e-23
 Identities = 186/228 (81%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctcccacttcttgagctccattccatcaggagggcttccttcaaccgtctttttcccgac 314
            |||||| ||||| |||||||| ||||| |||||||||||||| ||| ||||| | || ||
Sbjct: 1107 ctcccatttcttcagctccatgccatccggagggcttccttcgaccttctttgtgccaac 1048

                                                                        
Query: 315  atctttccagttggttgagagaacggttccattagactccacaaaggacttcatcattgc 374
             ||||||||||| || || | ||| || |||||||| ||||||||||| |||||||| ||
Sbjct: 1047 ttctttccagtttgtcgacaaaacagtcccattagattccacaaaggatttcatcatggc 988

                                                                        
Query: 375  tctacgcatatcttcatcagcatcactgtaaatttcacggaaaaacttgttcaatgcagc 434
            ||| |   | || ||||| |||||  ||||||| || |||||||| ||||||||||| ||
Sbjct: 987  tcttctggtgtcctcatcggcatctttgtaaatgtctcggaaaaatttgttcaatgctgc 928

                                                            
Query: 435  atcaccgtcaagtttctcatccttctcctgttttttcacttcagcctc 482
            ||| || || | ||| || || || ||||  |||||||||||||||||
Sbjct: 927  atctccatccaatttttcgtctttttcctcctttttcacttcagcctc 880
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>emb|AJ620882.1| Brassica oleracea mRNA for SGT1-like protein (sgt1b-1 gene)
          Length = 1068

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                       
Query: 414 gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcac 473
           ||||||||||||||  || ||||| || || || |||||||||||||||||||| |||||
Sbjct: 903 gaaaaacttgttcatagctgcatctccatctagcttctcatccttctcctgtttcttcac 844

                                   
Query: 474 ttcagcctcaagcttatcccagtc 497
           ||||||||| ||||| ||||||||
Sbjct: 843 ttcagcctccagcttgtcccagtc 820



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 251  aatactcccacttcttgagctccattccatc 281
            ||||||||||||||||||||||||| |||||
Sbjct: 1066 aatactcccacttcttgagctccataccatc 1036
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>emb|AJ620883.1| Brassica oleracea mRNA for SGT1-like protein (sgt1b-2 gene)
          Length = 1197

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                       
Query: 414 gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcac 473
           ||||||||||||||  || ||||| || || || |||||||||||||||||||| |||||
Sbjct: 900 gaaaaacttgttcatagctgcatctccatctagcttctcatccttctcctgtttcttcac 841

                                   
Query: 474 ttcagcctcaagcttatcccagtc 497
           |||||| || ||||| ||||||||
Sbjct: 840 ttcagcttccagcttgtcccagtc 817



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 251  aatactcccacttcttgagctccattccatc 281
            |||||||||||||||| |||||||| |||||
Sbjct: 1063 aatactcccacttcttsagctccatgccatc 1033
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>ref|NM_117197.2| Arabidopsis thaliana SGT1B AT4G11260 (SGT1B) mRNA, complete cds
          Length = 1448

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                        
Query: 414  gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcac 473
            |||||| |||||||  || ||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 1045 gaaaaatttgttcatagctgcatctccatcaagcttctcatccttctcctgtttcttcac 986

                                    
Query: 474  ttcagcctcaagcttatcccagtc 497
            |||||| || | ||| ||||||||
Sbjct: 985  ttcagcttccaacttgtcccagtc 962



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 251  aatactcccacttcttgagctccattccatc 281
            ||||||||||||||||||||||||| |||||
Sbjct: 1208 aatactcccacttcttgagctccatgccatc 1178
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>gb|AF439976.1| Arabidopsis thaliana SGT1b (SGT1b) mRNA, complete cds
          Length = 1290

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 414 gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcac 473
           |||||| |||||||  || ||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 912 gaaaaatttgttcatagctgcatctccatcaagcttctcatccttctcctgtttcttcac 853

                                   
Query: 474 ttcagcctcaagcttatcccagtc 497
           |||||| || | ||| ||||||||
Sbjct: 852 ttcagcttccaacttgtcccagtc 829



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 251  aatactcccacttcttgagctccattccatc 281
            ||||||||||||||||||||||||| |||||
Sbjct: 1075 aatactcccacttcttgagctccatgccatc 1045
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>gb|AY150487.1| Arabidopsis thaliana unknown protein (At4g11260) mRNA, complete cds
          Length = 1108

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 414 gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcac 473
           |||||| |||||||  || ||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 912 gaaaaatttgttcatagctgcatctccatcaagcttctcatccttctcctgtttcttcac 853

                                   
Query: 474 ttcagcctcaagcttatcccagtc 497
           |||||| || | ||| ||||||||
Sbjct: 852 ttcagcttccaacttgtcccagtc 829



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 251  aatactcccacttcttgagctccattccatc 281
            ||||||||||||||||||||||||| |||||
Sbjct: 1075 aatactcccacttcttgagctccatgccatc 1045
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>gb|AF370229.1| Arabidopsis thaliana unknown protein (At4g11260) mRNA, complete cds
          Length = 1420

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                        
Query: 414  gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcac 473
            |||||| |||||||  || ||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 1048 gaaaaatttgttcatagctgcatctccatcaagcttctcatccttctcctgtttcttcac 989

                                    
Query: 474  ttcagcctcaagcttatcccagtc 497
            |||||| || | ||| ||||||||
Sbjct: 988  ttcagcttccaacttgtcccagtc 965



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 251  aatactcccacttcttgagctccattccatc 281
            ||||||||||||||||||||||||| |||||
Sbjct: 1211 aatactcccacttcttgagctccatgccatc 1181
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>emb|AJ318019.1|ATH318019 Arabidopsis thaliana mRNA for SGT1-like protein (sgt1a gene)
          Length = 1354

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 414 gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcac 473
           |||||| |||||||  || ||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 951 gaaaaatttgttcatagctgcatctccatcaagcttctcatccttctcctgtttcttcac 892

                                   
Query: 474 ttcagcctcaagcttatcccagtc 497
           |||||| || | ||| ||||||||
Sbjct: 891 ttcagcttccaacttgtcccagtc 868



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 251  aatactcccacttcttgagctccattccatc 281
            ||||||||||||||||||||||||| |||||
Sbjct: 1114 aatactcccacttcttgagctccatgccatc 1084
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>gb|AF428340.1|AF428340 Arabidopsis thaliana AT4g11260/F8L21_50 mRNA, complete cds
          Length = 1400

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                        
Query: 414  gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcac 473
            |||||| |||||||  || ||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 1043 gaaaaatttgttcatagctgcatctccatcaagcttctcatccttctcctgtttcttcac 984

                                    
Query: 474  ttcagcctcaagcttatcccagtc 497
            |||||| || | ||| ||||||||
Sbjct: 983  ttcagcttccaacttgtcccagtc 960



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 251  aatactcccacttcttgagctccattccatc 281
            ||||||||||||||||||||||||| |||||
Sbjct: 1206 aatactcccacttcttgagctccatgccatc 1176
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>gb|AY615272.1| Solanum tuberosum SGT1 gene, complete cds
          Length = 4769

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctcccacttcttgagctccattccatcaggagggcttccttcaaccgtctttttcccgac 314
            |||||| ||||| |||||||| ||||| |||||||||||||||||| ||||| | || ||
Sbjct: 4576 ctcccatttcttcagctccatgccatctggagggcttccttcaaccttctttgtgccaac 4517

                        
Query: 315  atctttccagtt 326
             |||||||||||
Sbjct: 4516 ttctttccagtt 4505
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>emb|BX827155.1|CNS0A3LR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS17ZG06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1336

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                        
Query: 414  gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcac 473
            |||||| |||||||  || ||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 1001 gaaaaatttgttcatagctgcatctccatcaagcttctcatccttctcctgtttcttcac 942

                                    
Query: 474  ttcagcctcaagcttatcccagtc 497
            |||||| || | ||| ||||||||
Sbjct: 941  ttcagcttccaacttgtcccagtc 918



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 251  aatactcccacttcttgagctccattccatc 281
            ||||||||||||||||||||||||| |||||
Sbjct: 1164 aatactcccacttcttgagctccatgccatc 1134
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>gb|AY085464.1| Arabidopsis thaliana clone 152712 mRNA, complete sequence
          Length = 1366

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 414 gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctgttttttcac 473
           |||||| |||||||  || ||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 968 gaaaaatttgttcatagctgcatctccatcaagcttctcatccttctcctgtttcttcac 909

                                   
Query: 474 ttcagcctcaagcttatcccagtc 497
           |||||| || | ||| ||||||||
Sbjct: 908 ttcagcttccaacttgtcccagtc 885



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 251  aatactcccacttcttgagctccattccatc 281
            ||||||||||||||||||||||||| |||||
Sbjct: 1131 aatactcccacttcttgagctccatgccatc 1101
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>emb|AJ251317.1|RID251317 Rubus idaeus partial mRNA for putative protein phosphatase
          Length = 984

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 189/240 (78%)
 Strand = Plus / Minus

                                                                       
Query: 255 ctcccacttcttgagctccattccatcaggagggcttccttcaaccgtctttttcccgac 314
           |||||| ||||| | |||||| |||||||| |  ||||| || ||| |||| || || ||
Sbjct: 978 ctcccatttcttcatctccataccatcaggggcacttccctccaccttcttgttgcccac 919

                                                                       
Query: 315 atctttccagttggttgagagaacggttccattagactccacaaaggacttcatcattgc 374
            ||||||||||| ||||| || || || ||||| ||||||||||| || ||  |||| ||
Sbjct: 918 ttctttccagtttgttgaaagcaccgtcccatttgactccacaaaagattttctcatggc 859

                                                                       
Query: 375 tctacgcatatcttcatcagcatcactgtaaatttcacggaaaaacttgttcaatgcagc 434
            || |   | ||||||||||||||  |||| || ||  ||||||| |||||||| || ||
Sbjct: 858 ccttcttgtgtcttcatcagcatccttgtatatatcttggaaaaatttgttcaaagctgc 799

                                                                       
Query: 435 atcaccgtcaagtttctcatccttctcctgttttttcacttcagcctcaagcttatccca 494
           |||||| ||||| |||||||| || ||||  || |||||||  || |||||||| |||||
Sbjct: 798 atcaccatcaagcttctcatctttttcctccttcttcacttgggcttcaagcttgtccca 739
to top
>emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31
          Length = 198301

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 251   aatactcccacttcttgagctccattccatc 281
             ||||||||||||||||||||||||| |||||
Sbjct: 95755 aatactcccacttcttgagctccatgccatc 95785



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 414   gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctg 464
             |||||| |||||||  || ||||| || ||||| |||||||||||||||||
Sbjct: 96020 gaaaaatttgttcatagctgcatctccatcaagcttctcatccttctcctg 96070
to top
>emb|AL096882.2|ATF8L21 Arabidopsis thaliana DNA chromosome 4, BAC clone F8L21 (ESSA project)
          Length = 98948

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 251   aatactcccacttcttgagctccattccatc 281
             ||||||||||||||||||||||||| |||||
Sbjct: 22749 aatactcccacttcttgagctccatgccatc 22779



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 414   gaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctcctg 464
             |||||| |||||||  || ||||| || ||||| |||||||||||||||||
Sbjct: 23014 gaaaaatttgttcatagctgcatctccatcaagcttctcatccttctcctg 23064
to top
>ref|NM_001036627.1| Arabidopsis thaliana SGT1A AT4G23570 (SGT1A) transcript variant
           AT4G23570.3 mRNA, complete cds
          Length = 1334

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 448 ttctcatccttctcctgttttttcacttcagcctcaagcttatcccagtcctt 500
           |||||||| || ||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 909 ttctcatctttttcctgcttcttcacttcagcttccagcttgtcccagtcctt 857
to top
>ref|NM_179098.1| Arabidopsis thaliana SGT1A AT4G23570 (SGT1A) transcript variant
           AT4G23570.2 mRNA, complete cds
          Length = 1361

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 448 ttctcatccttctcctgttttttcacttcagcctcaagcttatcccagtcctt 500
           |||||||| || ||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 991 ttctcatctttttcctgcttcttcacttcagcttccagcttgtcccagtcctt 939
to top
>ref|NM_118488.4| Arabidopsis thaliana SGT1A AT4G23570 (SGT1A) transcript variant
           AT4G23570.1 mRNA, complete cds
          Length = 1335

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 448 ttctcatccttctcctgttttttcacttcagcctcaagcttatcccagtcctt 500
           |||||||| || ||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 938 ttctcatctttttcctgcttcttcacttcagcttccagcttgtcccagtcctt 886
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>gb|AF439975.1| Arabidopsis thaliana SGT1a (SGT1a) mRNA, complete cds
          Length = 1291

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 448 ttctcatccttctcctgttttttcacttcagcctcaagcttatcccagtcctt 500
           |||||||| || ||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 930 ttctcatctttttcctgcttcttcacttcagcttccagcttgtcccagtcctt 878
to top
>gb|AY096395.1| Arabidopsis thaliana putative phosphatase (At4g23570) mRNA,
           complete cds
          Length = 1084

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 448 ttctcatccttctcctgttttttcacttcagcctcaagcttatcccagtcctt 500
           |||||||| || ||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 854 ttctcatctttttcctgcttcttcacttcagcttccagcttgtcccagtcctt 802
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>gb|AY063978.1| Arabidopsis thaliana putative phosphatase (At4g23570) mRNA,
           complete cds
          Length = 1348

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 448 ttctcatccttctcctgttttttcacttcagcctcaagcttatcccagtcctt 500
           |||||||| || ||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 991 ttctcatctttttcctgcttcttcacttcagcttccagcttgtcccagtcctt 939
to top
>emb|BX827330.1|CNS0A2VG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS3ZG04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1336

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 448 ttctcatccttctcctgttttttcacttcagcctcaagcttatcccagtcctt 500
           |||||||| || ||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 938 ttctcatctttttcctgcttcttcacttcagcttccagcttgtcccagtcctt 886



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 255  ctcccacttcttgagctccattccatcaggagg 287
            |||||| |||||||||||||| ||||| |||||
Sbjct: 1131 ctcccatttcttgagctccatgccatccggagg 1099
to top
>emb|AJ318020.1|ATH318020 Arabidopsis thaliana partial mRNA for SGT1-like protein (sgt1b
           gene)
          Length = 968

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 448 ttctcatccttctcctgttttttcacttcagcctcaagcttatcccagtcctt 500
           |||||||| || ||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 625 ttctcatctttttcctgcttcttcacttcagcttccagcttgtcccagtcctt 573
to top
>emb|CR931763.8| Zebrafish DNA sequence from clone DKEY-65B12 in linkage group 5,
             complete sequence
          Length = 186739

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 407   tttcacggaaaaacttgttcaatgcagc 434
             |||||| |||||||||||||||||||||
Sbjct: 59137 tttcactgaaaaacttgttcaatgcagc 59164
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>emb|CR848794.6| Zebrafish DNA sequence from clone DKEYP-11C8 in linkage group 5,
             complete sequence
          Length = 108725

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 407   tttcacggaaaaacttgttcaatgcagc 434
             |||||| |||||||||||||||||||||
Sbjct: 60316 tttcactgaaaaacttgttcaatgcagc 60289
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>gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence
          Length = 193317

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 444   aagtttctcatccttctcctgttttttcactt 475
             ||||||||||| ||| ||||||||||||||||
Sbjct: 15190 aagtttctcattcttttcctgttttttcactt 15159
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>gb|AC097227.3| Papio anubis clone RP41-327F23, complete sequence
          Length = 138345

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 444    aagtttctcatccttctcctgttttttcactt 475
              ||||||||||| ||| ||||||||||||||||
Sbjct: 128694 aagtttctcattcttttcctgttttttcactt 128663
to top
>emb|CT025844.1| Medicago truncatula chromosome 5 clone mte1-41h18, COMPLETE SEQUENCE
          Length = 103321

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                         
Query: 402   gtaaatttcacggaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttctc 461
             |||||| |||||||| || || ||||| ||||||||||| ||||| || || || |||||
Sbjct: 24715 gtaaatatcacggaacaatttattcaaagcagcatcaccatcaagcttttcttctttctc 24774

                
Query: 462   ctg 464
             |||
Sbjct: 24775 ctg 24777



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 465   ttttttcacttcagcctcaagcttatcccagtcctt 500
             ||||||||||||||| || | ||||||||| |||||
Sbjct: 25275 ttttttcacttcagcttccaacttatcccaatcctt 25310
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>gb|AC138791.3| Mus musculus BAC clone RP23-222G6 from chromosome 7, complete sequence
          Length = 203288

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 468    tttcacttcagcctcaagctt 488
              |||||||||||||||||||||
Sbjct: 170090 tttcacttcagcctcaagctt 170070



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 468    tttcacttcagcctcaagctt 488
              |||||||||||||||||||||
Sbjct: 140679 tttcacttcagcctcaagctt 140659



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 468    tttcacttcagcctcaagctt 488
              |||||||||||||||||||||
Sbjct: 123070 tttcacttcagcctcaagctt 123090
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>gb|BC005456.1| Mus musculus zinc finger protein 111, mRNA (cDNA clone MGC:6347
            IMAGE:3490047), complete cds
          Length = 2648

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 468  tttcacttcagcctcaagctt 488
            |||||||||||||||||||||
Sbjct: 1168 tttcacttcagcctcaagctt 1188
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>gb|BC096771.1| Mus musculus zinc finger protein 114, mRNA (cDNA clone MGC:107483
            IMAGE:30097272), complete cds
          Length = 3333

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 468  tttcacttcagcctcaagctt 488
            |||||||||||||||||||||
Sbjct: 1652 tttcacttcagcctcaagctt 1672
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>emb|Z84719.1|HS340G1 Human DNA sequence from clone RP3-340G1 on chromosome 6q16, complete
             sequence
          Length = 124010

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 450   ctcatccttctcctgtttttt 470
             |||||||||||||||||||||
Sbjct: 77549 ctcatccttctcctgtttttt 77569
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>gb|AF167318.1| Mus musculus zinc finger protein ZFP111 mRNA, complete cds
          Length = 3379

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 468  tttcacttcagcctcaagctt 488
            |||||||||||||||||||||
Sbjct: 1140 tttcacttcagcctcaagctt 1160
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>gb|AF167316.1| Mus musculus zinc finger protein ZFP109 mRNA, complete cds
          Length = 2932

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 468  tttcacttcagcctcaagctt 488
            |||||||||||||||||||||
Sbjct: 1976 tttcacttcagcctcaagctt 1996
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>emb|AL161559.2|ATCHRIV59 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 59
          Length = 199199

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 255    ctcccacttcttgagctccattccatcaggagg 287
              |||||| |||||||||||||| ||||| |||||
Sbjct: 156070 ctcccatttcttgagctccatgccatccggagg 156038



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 469    ttcacttcagcctcaagcttatcccagtcctt 500
              ||||||||||| || ||||| |||||||||||
Sbjct: 155685 ttcacttcagcttccagcttgtcccagtcctt 155654
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>emb|AL035394.1|ATF9D16 Arabidopsis thaliana DNA chromosome 4, BAC clone  F9D16 (ESSAII
             project)
          Length = 119430

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 255   ctcccacttcttgagctccattccatcaggagg 287
             |||||| |||||||||||||| ||||| |||||
Sbjct: 20280 ctcccatttcttgagctccatgccatccggagg 20248



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 469   ttcacttcagcctcaagcttatcccagtcctt 500
             ||||||||||| || ||||| |||||||||||
Sbjct: 19895 ttcacttcagcttccagcttgtcccagtcctt 19864
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>dbj|AK139475.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830096C01 product:hypothetical Zn-finger,
            C2H2 type containing protein, full insert sequence
          Length = 3155

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 468  tttcacttcagcctcaagctt 488
            |||||||||||||||||||||
Sbjct: 2345 tttcacttcagcctcaagctt 2365
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>gb|AC122493.4| Mus musculus BAC clone RP24-392M11 from 3, complete sequence
          Length = 161477

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 468    tttcacttcagcctcaagctt 488
              |||||||||||||||||||||
Sbjct: 128531 tttcacttcagcctcaagctt 128551
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>ref|NM_001029933.1| Mus musculus zinc finger protein 114 (Zfp114), mRNA
          Length = 3333

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 468  tttcacttcagcctcaagctt 488
            |||||||||||||||||||||
Sbjct: 1652 tttcacttcagcctcaagctt 1672
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>ref|NM_020262.1| Mus musculus zinc finger protein 109 (Zfp109), mRNA
          Length = 2932

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 468  tttcacttcagcctcaagctt 488
            |||||||||||||||||||||
Sbjct: 1976 tttcacttcagcctcaagctt 1996
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>ref|NM_019940.1| Mus musculus zinc finger protein 111 (Zfp111), mRNA
          Length = 3379

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 468  tttcacttcagcctcaagctt 488
            |||||||||||||||||||||
Sbjct: 1140 tttcacttcagcctcaagctt 1160
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>gb|AC133938.4| Mus musculus BAC clone RP23-399J17 from 3, complete sequence
          Length = 208906

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 468    tttcacttcagcctcaagctt 488
              |||||||||||||||||||||
Sbjct: 172445 tttcacttcagcctcaagctt 172425
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>gb|AC147025.2| Pan troglodytes BAC clone RP43-92C7 from 7, complete sequence
          Length = 142948

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 444   aagtttctcatccttctcctgttttttcactt 475
             ||||||||||| ||| ||||||||||| ||||
Sbjct: 49978 aagtttctcattcttttcctgtttttttactt 49947
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>emb|AL110499.1|CEY62F5A Caenorhabditis elegans YAC Y62F5A, complete sequence
          Length = 19402

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   aacggacgttttgcacttcc 37
            ||||||||||||||||||||
Sbjct: 2779 aacggacgttttgcacttcc 2798
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>gb|AC004906.3| Homo sapiens PAC clone RP5-852O24 from 7, complete sequence
          Length = 97749

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 448   ttctcatccttctcctgttttttc 471
             ||||| ||||||||||||||||||
Sbjct: 18404 ttctcctccttctcctgttttttc 18427
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>emb|AL138956.17| Human DNA sequence from clone RP11-16D22 on chromosome 13 Contains the
             5' end of a novel gene, complete sequence
          Length = 165257

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   ggtttcattaatactcccacttct 265
             ||||||||||| ||||||||||||
Sbjct: 51375 ggtttcattaaaactcccacttct 51352
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>emb|AL157368.7| Human DNA sequence from clone RP11-520L19 on chromosome 13q12.11-12.3
             Contains part of the MIPEP gene for intermediate
             mitochondrial peptidase, complete sequence
          Length = 24137

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   ttcatcagcatcactgtaaa 406
             ||||||||||||||||||||
Sbjct: 21912 ttcatcagcatcactgtaaa 21931
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>emb|Z68144.1|SPAC3H1 S. pombe chromosome I cosmid c3H1
          Length = 36920

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   ttccttcaaccgtctttttc 309
             ||||||||||||||||||||
Sbjct: 31656 ttccttcaaccgtctttttc 31675
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>gb|AY355338.1| Lilium longiflorum pollen-specific SGT1 mRNA, complete cds
          Length = 1086

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 484 agcttatcccagtcctttttggattttgatgaaggataagatgg 527
           ||||||||||| ||  ||||||||||||| || || ||||||||
Sbjct: 851 agcttatcccaatcaattttggattttgaagatgggtaagatgg 808
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>emb|AL929272.10| Mouse DNA sequence from clone RP23-69H10 on chromosome 11 Contains the 5'
              end of the Vrk2 gene for vaccinia related kinase 2 and a
              CpG island, complete sequence
          Length = 196753

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    gaccaggatttacaacatgg 234
              ||||||||||||||||||||
Sbjct: 189731 gaccaggatttacaacatgg 189750
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>dbj|AB087258.1| Histophilus somni ibpB, ibpA, tbpA genes for outer membrane
            transporter protein, high molecular weight-immunoglobulin
            binding proteins, hypothetical proteins, complete cds
          Length = 16894

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 498  ctttttggattttgatgaag 517
            ||||||||||||||||||||
Sbjct: 1353 ctttttggattttgatgaag 1372
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>gb|AC115676.1| Homo sapiens 12 BAC RP11-656E20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 78000

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 371   ttgctctacgcatatcttcatcagcatc 398
             ||||||||||||| |||||||| |||||
Sbjct: 11402 ttgctctacgcatctcttcatccgcatc 11429
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>gb|AC006841.7| Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete
             sequence
          Length = 125045

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   ctcccacttcttgagctcca 274
             ||||||||||||||||||||
Sbjct: 37746 ctcccacttcttgagctcca 37727
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>gb|AC183494.1| Brassica oleracea Contig C, complete sequence
          Length = 285752

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    tcacggaaaaacttgttcaa 428
              ||||||||||||||||||||
Sbjct: 285200 tcacggaaaaacttgttcaa 285181
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>gb|AC010947.6| Homo sapiens chromosome 18, clone RP11-25L3, complete sequence
          Length = 185470

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    agctccattccatcaggagg 287
              ||||||||||||||||||||
Sbjct: 104280 agctccattccatcaggagg 104299



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    agctccattccatcaggagg 287
              ||||||||||||||||||||
Sbjct: 104100 agctccattccatcaggagg 104119



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    agctccattccatcaggagg 287
              ||||||||||||||||||||
Sbjct: 104010 agctccattccatcaggagg 104029



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    agctccattccatcaggagg 287
              ||||||||||||||||||||
Sbjct: 103965 agctccattccatcaggagg 103984
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>ref|NM_001018987.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC3H1.12c),
            partial mRNA
          Length = 3396

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  ttccttcaaccgtctttttc 309
            ||||||||||||||||||||
Sbjct: 2776 ttccttcaaccgtctttttc 2757
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>ref|NM_064061.3| Caenorhabditis elegans AGEing alteration family member (age-1)
            (age-1) mRNA, complete cds
          Length = 3766

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   aacggacgttttgcacttcc 37
            ||||||||||||||||||||
Sbjct: 2608 aacggacgttttgcacttcc 2589
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>gb|AC010904.13| Homo sapiens BAC clone RP11-557L19 from 2, complete sequence
          Length = 106636

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 543   agctggtacatttatcttct 562
             ||||||||||||||||||||
Sbjct: 51407 agctggtacatttatcttct 51426
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>gb|U56101.1|CEU56101 Caenorhabditis elegans AGE-1 mRNA, partial cds
          Length = 3504

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   aacggacgttttgcacttcc 37
            ||||||||||||||||||||
Sbjct: 2555 aacggacgttttgcacttcc 2536
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>gb|AC172870.1| Brassica rapa subsp. pekinensis clone KBrH004A06, complete sequence
          Length = 145603

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                              
Query: 413    ggaaaaacttgttcaatgcagcatcaccgtcaagtttctcatccttct 460
              |||| ||||||||||| ||||| || || ||||| || ||||||||||
Sbjct: 102839 ggaagaacttgttcaaagcagcgtctccttcaagcttatcatccttct 102792
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>emb|AL049873.3|CNS0000T Human chromosome 14 DNA sequence BAC R-112J1 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148133

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   tcaggagggcttccttcaac 299
             ||||||||||||||||||||
Sbjct: 64145 tcaggagggcttccttcaac 64164


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,510,469
Number of Sequences: 3902068
Number of extensions: 5510469
Number of successful extensions: 139730
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139525
Number of HSP's gapped (non-prelim): 200
length of query: 581
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 558
effective length of database: 17,143,297,704
effective search space: 9565960118832
effective search space used: 9565960118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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