>H1_PARAN (P02256) Histone H1, gonadal|
          Length = 248

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
 Frame = -1

Query: 439 KKRVAEEKKSARKMGLGVRLLPPSAEDASAAARVRFASNFEKSRKDKRAAIKASSIFPEP 260
           KK  A   K ARK     +     A+  +AAA+ + A+  +K++K K+ A K +    + 
Sbjct: 132 KKAKAAAAKKARKAKAAAKRKAALAKKKAAAAKRKAAAKAKKAKKPKKKAAKKAKKPAKK 191

Query: 259 SGSASKGKIDLALKRRNIKXX-XXXALMAGRAKPSSWSRQSSGSENARTAVPILARR 92
           S   +K     + K++  K         AG+ KP++   + S  +  +   P  AR+
Sbjct: 192 SPKKAKKPAKKSPKKKKAKRSPKKAKKAAGKRKPAAKKARRSPRKAGKRRSPKKARK 248

>YS19_CAEEL (Q09651) Hypothetical protein ZK1307.9|
          Length = 369

 Score = 33.9 bits (76), Expect = 0.51
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -2

Query: 684 ADPMYKLEHQGEDIRKKKEEEPVLVRLQRLSDSRHSDDYSLNRTLRDRLR 535
           AD M+K EH+ ED  K   EE  + +L+ + + R  DD++ N  LR + R
Sbjct: 143 ADAMFKKEHEAEDKDKAATEEGRVDKLEWIQE-RMRDDFTANSFLRAQFR 191

>MSBB_ECOLI (P24205) Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA|
           acyltransferase (EC 2.3.1.-)
          Length = 323

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -1

Query: 391 GVRLLPPSAEDASAAARVRFASNFEKSRKDKRAAIKASSIFPEPSGSASKGKID 230
           G+ L PP   D   A   RFA    KS + +RA I  S  FPE S +  +  +D
Sbjct: 35  GIALTPPKFRDPILARLGRFAGRLGKSSR-RRALINLSLCFPERSEAEREAIVD 87

>MSBB1_SHIFL (P59198) Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA|
           acyltransferase 1 (EC 2.3.1.-)
          Length = 323

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -1

Query: 391 GVRLLPPSAEDASAAARVRFASNFEKSRKDKRAAIKASSIFPEPSGSASKGKID 230
           G+ L PP   D   A   RFA    KS + +RA I  S  FPE S +  +  +D
Sbjct: 35  GIALTPPKFRDPILARLGRFAGRLGKSSR-RRALINLSLCFPERSEAEREAIVD 87

>AIRE_MOUSE (Q9Z0E3) Autoimmune regulator (Autoimmune polyendocrinopathy|
           candidiasis ectodermal dystrophy protein homolog)
           (APECED protein homolog)
          Length = 552

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 356 VRSSPCEVRLKFREEQK-GQESGDQGLLHLPRAIRLSLKRQDRPRAEEAEYKS*CSVCAD 180
           VR+   +V +  R+EQK GQ+ G   L  LP   +++ K +D            C+VC D
Sbjct: 258 VRAKGAQVTIPGRDEQKVGQQCGVPPLPSLPSEPQVNQKNEDE-----------CAVCHD 306

Query: 179 GGQ 171
           GG+
Sbjct: 307 GGE 309

>KPCD1_MOUSE (Q62101) Serine/threonine-protein kinase D1 (EC 2.7.11.13)|
           (nPKC-D1) (Protein kinase D) (Protein kinase C mu type)
           (nPKC-mu)
          Length = 918

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 302 QESGDQGLLHLPRAIRLSLKRQDRPRAEEAEYKS 201
           Q +G+QGL +    I LS    D P AEE E K+
Sbjct: 877 QYAGEQGLQYPAHLISLSASHSDSPEAEEREMKA 910

>ARHGG_HUMAN (Q5VV41) Rho guanine nucleotide exchange factor 16|
          Length = 709

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = -1

Query: 430 VAEEKKSARKMGLGVRLLPPSAEDASAAARVRFASNFEKSRKDKRAAIKASSIFPEPSGS 251
           ++ E  +A K+G   +L+P S   AS A       +F  +   + AA +   + P PS S
Sbjct: 73  LSTESPAALKLGTQ-QLIPKSLAVASKAKTPARHQSFGAAVLSREAARRDPKLLPAPSFS 131

Query: 250 ASKGKIDL---ALKRRNIKXXXXXALMAGRAKP 161
                +D     + RRN++     A M G  KP
Sbjct: 132 LDDMDVDKDPGGMLRRNLRNQSYRAAMKGLGKP 164

>HEX3_YEAST (P32828) Hexose metabolism-related protein HEX3|
          Length = 619

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = -1

Query: 424 EEKKSARKMGLGVRLLPPSAEDASAAARVRFASNFEKSRKDKRAAIKASSIFPE 263
           EE  S R+  L VRL P         A  RF  +  +SR  +R  I ASS  P+
Sbjct: 32  EEDASIREANLPVRLYPDRRVGRRRDALNRFVRSDSRSRNSQRTHITASSERPD 85

>FPS_DROME (P18106) Tyrosine-protein kinase Fps85D (EC 2.7.10.2) (dFer)|
          Length = 1325

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -2

Query: 708 ADEERDKLADPMYKLEHQGEDIRKKKEEEPVLVRLQRLSDSRHSDDY-----SLNRTLRD 544
           AD E DK  D     E +GE I+ KKE+  + + + + +     D +      LNR L D
Sbjct: 582 ADLELDKKKDTSPSPECKGEQIQPKKEQ--IRIEINQTAPQNSIDAHLDRIDELNRVLDD 639

Query: 543 RLR 535
           RL+
Sbjct: 640 RLK 642


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,565,267
Number of Sequences: 219361
Number of extensions: 1648485
Number of successful extensions: 4891
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4834
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)