ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13n12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence Length = 7674 Score = 95.6 bits (48), Expect = 1e-16 Identities = 81/91 (89%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgcta 282 |||||||||||||| | || | ||||| |||||||||||| |||||||||||||||||| Sbjct: 4121 aagagcagggtccgactacggacgaaaacaaacgagaaaa--cgacgtccatccttgcta 4064 Query: 283 tcccaagctgtcggcctagaacccatcctag 313 ||||| |||| |||||| ||||||||||||| Sbjct: 4063 tcccaggctgccggcctggaacccatcctag 4033 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 313 gggaaatgatcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaagac 372 |||||||||||||||||| || ||||||| ||||||||| |||| ||| ||||| |||| Sbjct: 2673 gggaaatgatcatcttgcctgagatcccgcttggaagaagaatgcctccgtgaagcagac 2614 Query: 373 aaaccaatgtagtcgaatgaatcctcac 400 |||| | ||||||||| || ||||||| Sbjct: 2613 gaaccgacgtagtcgaacgagtcctcac 2586 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Minus Query: 151 gcacgaaggcctcgatagggatgaaagtgcatctcgttgttttgaaggaatggatattgt 210 |||||||||||||| |||||| ||| ||||||||| || | | | |||||||||| || Sbjct: 4286 gcacgaaggcctcgtcagggatagaagcgcatctcgtcgtgtcgcaagaatggatatcgt 4227 Query: 211 tacaa 215 ||||| Sbjct: 4226 tacaa 4222
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 83.8 bits (42), Expect = 4e-13 Identities = 82/95 (86%), Gaps = 4/95 (4%) Strand = Plus / Minus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | ||||| |||||||||||| | |||||||||||||| Sbjct: 327093 aagagcagggtccgactacggacgaaaacaaacgagaaaagaagaacgacgtccatcctt 327034 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||||| |||| |||||| ||||||||||||| Sbjct: 327033 gctatcccaggctgccggcctggaacccatcctag 326999 Score = 67.9 bits (34), Expect = 2e-08 Identities = 80/95 (84%), Gaps = 4/95 (4%) Strand = Plus / Minus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | |||| |||||||||||| | |||||||||||||| Sbjct: 131493 aagagcagggtccgactacggaagaaaacaaacgagaaaagaagaacgacgtccatcctt 131434 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||||| |||| || ||| ||||||||||||| Sbjct: 131433 gctatcccaggctgccgccctggaacccatcctag 131399 Score = 63.9 bits (32), Expect = 4e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 313 gggaaatgatcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaagac 372 |||||||| ||||||||| || ||||||| ||||||||| |||| ||| ||||||| || Sbjct: 177395 gggaaatggtcatcttgcctgagatcccgcttggaagaagaatgtctccgtgaagaacac 177336 Query: 373 aaaccaatgtagtcgaatgaatcctcac 400 |||| | ||||||||||| ||||||| Sbjct: 177335 gaaccgacgtagtcgaatgggtcctcac 177308
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial and complete sequences Length = 11820 Score = 79.8 bits (40), Expect = 6e-12 Identities = 82/96 (85%), Gaps = 5/96 (5%) Strand = Plus / Minus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaaac-----cgacgtccatcct 277 |||||||||||||| | || | ||||| ||||||||||||| ||||||||||||| Sbjct: 11665 aagagcagggtccgactacggacgaaaacaaacgagaaaaataagaacgacgtccatcct 11606 Query: 278 tgctatcccaagctgtcggcctagaacccatcctag 313 |||||||||| |||| |||||| ||||||||||||| Sbjct: 11605 tgctatcccaggctgccggcctggaacccatcctag 11570 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 313 gggaaatgatcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaagac 372 |||||||||||||||||| || ||||||| ||||||||| |||| ||| ||||| |||| Sbjct: 2673 gggaaatgatcatcttgcctgagatcccgcttggaagaagaatgcctccgtgaagcagac 2614 Query: 373 aaaccaatgtagtcgaatgaatcctcac 400 |||| | ||||||||| || ||||||| Sbjct: 2613 gaaccgacgtagtcgaacgagtcctcac 2586 Score = 67.9 bits (34), Expect = 2e-08 Identities = 80/95 (84%), Gaps = 4/95 (4%) Strand = Plus / Minus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | ||||| ||||||| |||| | |||| ||||||||| Sbjct: 4127 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacatccatcctt 4068 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||||| |||| |||||| ||||||||||||| Sbjct: 4067 gctatcccaggctgccggcctggaacccatcctag 4033 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 313 gggaaatgatcatcttgcttgtgatcccgtttggaagaa 351 |||||||||||||||||| || ||||||| ||||||||| Sbjct: 10204 gggaaatgatcatcttgcgtgagatcccgcttggaagaa 10166 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Minus Query: 151 gcacgaaggcctcgatagggatgaaagtgcatctcgttgttttgaaggaatggatattgt 210 |||||||||||||| |||||| ||| ||||||||| || | | | |||||||||| || Sbjct: 4292 gcacgaaggcctcgtcagggatagaagcgcatctcgtcgtgtcgcaagaatggatatcgt 4233 Query: 211 tacaa 215 ||||| Sbjct: 4232 tacaa 4228
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 79.8 bits (40), Expect = 6e-12 Identities = 81/94 (86%), Gaps = 3/94 (3%) Strand = Plus / Plus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa---accgacgtccatccttg 279 |||||| ||||||| | || | ||||| |||||||||||| | ||||||||||||||| Sbjct: 37353 aagagcggggtccgactacggacgaaaacaaacgagaaaatgaaacgacgtccatccttg 37412 Query: 280 ctatcccaagctgtcggcctagaacccatcctag 313 |||||||| |||| |||||| ||||||||||||| Sbjct: 37413 ctatcccaggctgccggcctggaacccatcctag 37446 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 313 gggaaatgatcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaagac 372 |||||||||||||||||| || ||||||| ||||||||| |||| ||| ||||| |||| Sbjct: 38818 gggaaatgatcatcttgcctgagatcccgcttggaagaagaatgcctccgtgaagcagac 38877 Query: 373 aaaccaatgtagtcgaa 389 ||| | ||||||||| Sbjct: 38878 gaactgacgtagtcgaa 38894 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Plus Query: 151 gcacgaaggcctcgatagggatgaaagtgcatctcgttgttttgaaggaatggatattgt 210 |||||||||||||| |||||| ||| ||||||||| || | | | |||||||||| || Sbjct: 37188 gcacgaaggcctcgtcagggatagaagcgcatctcgtcgtgtcgcaagaatggatatcgt 37247 Query: 211 tacaa 215 ||||| Sbjct: 37248 tacaa 37252
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic sequence Length = 3124 Score = 77.8 bits (39), Expect = 3e-11 Identities = 85/99 (85%), Gaps = 1/99 (1%) Strand = Plus / Minus Query: 216 catgtagaagagcagggtccggcaaccggcgaaatcaaacgagaaaa-accgacgtccat 274 |||| |||||||||||||||| | || ||||| ||||||| |||| | |||||||||| Sbjct: 2343 catgaagaagagcagggtccgactacgaacgaaaacaaacgataaaagaacgacgtccat 2284 Query: 275 ccttgctatcccaagctgtcggcctagaacccatcctag 313 ||||||||||||| |||| || ||| ||||||||||||| Sbjct: 2283 ccttgctatcccaggctgccgacctggaacccatcctag 2245 Score = 42.1 bits (21), Expect = 1.4 Identities = 63/77 (81%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgatagggatgaaagtgcatctcgttgttttgaagg 198 ||||||||||| || ||| | ||||| |||||| ||| ||||||||| |||| | | | Sbjct: 2510 atccttattttggcgcgagtgtctcgacagggatagaagcgcatctcgtcgtttcgcaag 2451 Query: 199 aatggatattgttacaa 215 ||||||||| ||||||| Sbjct: 2450 aatggatatcgttacaa 2434
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/95 (85%), Gaps = 4/95 (4%) Strand = Plus / Plus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | ||||| ||||||| |||| | |||||||||||||| Sbjct: 68217 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 68276 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||||| |||| |||||| ||||||||||||| Sbjct: 68277 gctatcccaggctgccggcctggaacccatcctag 68311 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 313 gggaaatgatcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaagac 372 |||||||||||||||||| || ||||||| ||||||||| |||| ||| ||||| |||| Sbjct: 69670 gggaaatgatcatcttgcctgagatcccgcttggaagaagaatgcctccgtgaagcagac 69729 Query: 373 aaaccaatgtagtcgaa 389 |||| | ||||||||| Sbjct: 69730 gaaccgacgtagtcgaa 69746
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/95 (85%), Gaps = 4/95 (4%) Strand = Plus / Plus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | ||||| ||||||| |||| | |||||||||||||| Sbjct: 64913 aagagcagggtccgtctacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 64972 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||||| |||| |||||| ||||||||||||| Sbjct: 64973 gctatcccaggctgccggcctggaacccatcctag 65007
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/95 (85%), Gaps = 4/95 (4%) Strand = Plus / Plus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | ||||| ||||||| |||| | |||||||||||||| Sbjct: 102845 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 102904 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||||| |||| |||||| ||||||||||||| Sbjct: 102905 gctatcccaggctgccggcctggaacccatcctag 102939 Score = 48.1 bits (24), Expect = 0.023 Identities = 66/80 (82%) Strand = Plus / Plus Query: 310 ctagggaaatgatcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaa 369 ||||| ||||||||||||||| || ||||||| |||||||| || | ||| ||||| | Sbjct: 104319 ctaggaaaatgatcatcttgcctgagatcccgcctggaagaagaacaactccgtgaagca 104378 Query: 370 gacaaaccaatgtagtcgaa 389 ||| |||| | ||||||||| Sbjct: 104379 gacgaaccgacgtagtcgaa 104398
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/95 (85%), Gaps = 4/95 (4%) Strand = Plus / Plus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | ||||| ||||||| |||| | |||||||||||||| Sbjct: 16443 aagagcagggtccgactacagacgaaaacaaacgacaaaagaagaacgacgtccatcctt 16502 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||||| |||| |||||| ||||||||||||| Sbjct: 16503 gctatcccaggctgccggcctggaacccatcctag 16537 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 55 aacacacccctctcactgaagaaatgtcaatctagttggccatactatttcaat 108 |||||||| ||| |||||||||||| | |||||||||||||| ||||| ||||| Sbjct: 7697 aacacaccactcccactgaagaaatattaatctagttggccaaactatctcaat 7750 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 313 gggaaatgatcatcttgcttgtgatcccgtttggaagaacaatg 356 |||||||||||||||||| || ||||||| ||||||||| |||| Sbjct: 17900 gggaaatgatcatcttgcctgagatcccgcttggaagaagaatg 17943
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/95 (85%), Gaps = 4/95 (4%) Strand = Plus / Minus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | ||||| ||||||| |||| | |||||||||||||| Sbjct: 10487 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 10428 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||||| |||| |||||| ||||||||||||| Sbjct: 10427 gctatcccaggctgccggcctggaacccatcctag 10393 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Minus Query: 151 gcacgaaggcctcgatagggatgaaagtgcatctcgttgttttgaaggaatggatattgt 210 |||||||||||||| |||||| ||| ||||||||| || | | | |||||||||| || Sbjct: 10652 gcacgaaggcctcgtcagggatagaagcgcatctcgtcgtgtcgcaagaatggatatcgt 10593 Query: 211 tacaa 215 ||||| Sbjct: 10592 tacaa 10588
>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR sequence Length = 3130 Score = 75.8 bits (38), Expect = 1e-10 Identities = 81/95 (85%), Gaps = 4/95 (4%) Strand = Plus / Minus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | ||||| ||||||| |||| | |||||||||||||| Sbjct: 2930 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 2871 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||||| |||| |||||| ||||||||||||| Sbjct: 2870 gctatcccaggctgccggcctggaacccatcctag 2836 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Minus Query: 151 gcacgaaggcctcgatagggatgaaagtgcatctcgttgttttgaaggaatggatattgt 210 |||||||||||||| |||||| ||| ||||||||| || | | | |||||||||| || Sbjct: 3095 gcacgaaggcctcgtcagggatagaagcgcatctcgtcgtgtcgcaagaatggatatcgt 3036 Query: 211 tacaa 215 ||||| Sbjct: 3035 tacaa 3031
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 265 cgacgtccatccttgctatcccaagctgtcggcctagaacccatcctag 313 ||||||||||||||||||||||| |||| |||||| ||||||||||||| Sbjct: 3429 cgacgtccatccttgctatcccaggctgccggcctggaacccatcctag 3477 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 313 gggaaatgatcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaagac 372 ||||||||||| |||||| || ||||||| ||||||||| |||| ||| ||||| |||| Sbjct: 4841 gggaaatgatcctcttgcctgagatcccgcttggaagaagaatgcctccgtgaagcagac 4900 Query: 373 aaaccaatgtagtcgaa 389 |||| | ||||||||| Sbjct: 4901 gaaccgacgtagtcgaa 4917
>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7586 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 312 agggaaatgatcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaaga 371 ||||||||||||||||||| | ||||||| ||||||||| || ||| || ||||| | | Sbjct: 2604 agggaaatgatcatcttgcccgagatcccgcttggaagaagaacgaaaccgtgaagtaaa 2545 Query: 372 caaaccaatgtagtcgaatgaatcctcac 400 | |||||| ||||||||| |||||||||| Sbjct: 2544 cgaaccaacgtagtcgaacgaatcctcac 2516 Score = 44.1 bits (22), Expect = 0.36 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgataggg-atgaaagtgcatctcgt 187 ||||||||||| |||||| |||||||| |||| || ||||||||||||| Sbjct: 4209 atccttattttggcacgagggcctcgacagggtatagaagtgcatctcgt 4160 Score = 42.1 bits (21), Expect = 1.4 Identities = 37/41 (90%), Gaps = 1/41 (2%) Strand = Plus / Minus Query: 271 ccatccttgctatcccaagctgtcggcctagaacccatcct 311 ||||||||||||||||| |||| | |||| ||||||||||| Sbjct: 3985 ccatccttgctatcccaggctg-ccgcctggaacccatcct 3946
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal repeat, complete sequence Length = 7575 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 313 gggaaatgatcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaagac 372 |||||||||||||||||| || ||||||| ||||||||| |||| ||| ||||| |||| Sbjct: 2673 gggaaatgatcatcttgcctgagatcccgcttggaagaagaatgcctccgtgaagcagac 2614 Query: 373 aaaccaatgtagtcgaatgaatcctcac 400 |||| | ||||||||| || ||||||| Sbjct: 2613 gaaccgacgtagtcgaacgagtcctcac 2586 Score = 67.9 bits (34), Expect = 2e-08 Identities = 80/95 (84%), Gaps = 4/95 (4%) Strand = Plus / Minus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | ||||| ||||||| |||| | |||| ||||||||| Sbjct: 4127 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacatccatcctt 4068 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||||| |||| |||||| ||||||||||||| Sbjct: 4067 gctatcccaggctgccggcctggaacccatcctag 4033 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Minus Query: 151 gcacgaaggcctcgatagggatgaaagtgcatctcgttgttttgaaggaatggatattgt 210 |||||||||||||| |||||| ||| ||||||||| || | | | |||||||||| || Sbjct: 4292 gcacgaaggcctcgtcagggatagaagcgcatctcgtcgtgtcgcaagaatggatatcgt 4233 Query: 211 tacaa 215 ||||| Sbjct: 4232 tacaa 4228
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 318 atgatcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaagacaaacc 377 ||||||||||||| | ||||||| ||||||| || || |||||||||||||||||| Sbjct: 1138 atgatcatcttgcccgagatcccgcaaggaagaagaacgagtccatgaagaagacaaaca 1197 Query: 378 aatgtagtcgaatgaatcctcac 400 ||||||||||| |||||||||| Sbjct: 1198 gatgtagtcgaacgaatcctcac 1220 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Plus Query: 345 ggaagaacaatgaatccatgaagaagacaaaccaatgtagtcgaatgaatcctcac 400 ||||||| || || |||||||||| ||||| | ||||||||||| |||||||||| Sbjct: 8755 ggaagaagaacgagtccatgaagaggacaagcggatgtagtcgaacgaatcctcac 8810
>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene, complete cds Length = 6561 Score = 67.9 bits (34), Expect = 2e-08 Identities = 80/95 (84%), Gaps = 4/95 (4%) Strand = Plus / Plus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | ||||| ||| |||||||| | |||||||||||||| Sbjct: 2615 aagagcagggtccgactacggacgaaaacaaccgagaaaagaagaacgacgtccatcctt 2674 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||||| |||| ||| || ||||||||||||| Sbjct: 2675 gctatcccaggctgccggtctggaacccatcctag 2709
>emb|AJ279072.1|HVU279072 Hordeum vulgare BARE-2 and partial BAGY-2 retrotransposons Length = 19906 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 59 cacccctctcactgaagaaatgtcaatctagttggccatactatttcaatggatc 113 |||| ||||||| ||||||| |||||||||||||||| ||||||||||| |||| Sbjct: 743 cacctctctcaccgaagaaacatcaatctagttggccaaactatttcaatagatc 797
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 60.0 bits (30), Expect = 6e-06 Identities = 79/95 (83%), Gaps = 4/95 (4%) Strand = Plus / Minus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaa----accgacgtccatcctt 278 |||||||||||||| | || | ||||| ||||||| |||| | |||||||||||||| Sbjct: 11006 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 10947 Query: 279 gctatcccaagctgtcggcctagaacccatcctag 313 ||||||| | | || |||||| ||||||||||||| Sbjct: 10946 gctatccgagggtgccggcctggaacccatcctag 10912 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 313 gggaaatgatcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaagac 372 |||||||||||||||||| || ||||||| |||||||| |||| ||| ||||| |||| Sbjct: 9556 gggaaatgatcatcttgcctgagatcccgcttggaagaggaatgcctccgtgaagcagac 9497 Query: 373 aaaccaatgtagtcgaa 389 |||| | ||||||||| Sbjct: 9496 gaaccgacgtagtcgaa 9480
>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon, partial sequence Length = 3434 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgatagggatgaaagtgcatctcgttgttttgaagg 198 ||||||||||| |||||| |||||||| |||||| ||| ||||||||| || ||| | | Sbjct: 246 atccttattttggcacgagggcctcgacagggatagaagcgcatctcgtcgtgttgcaag 187 Query: 199 aatggatat 207 ||||||||| Sbjct: 186 aatggatat 178 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/72 (84%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 221 agaagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgc 280 |||||||||||||||| | || | ||||| ||||||| |||| ||| ||||||||||| Sbjct: 71 agaagagcagggtccgactacggacgaaaacaaacgataaaat--gacatccatccttgc 14 Query: 281 tatcccaagctg 292 ||||||| |||| Sbjct: 13 tatcccaggctg 2
>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial sequence Length = 3698 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/72 (86%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 221 agaagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgc 280 |||||||||||||||||| || | ||||| ||||||| |||| | || ||||||||||| Sbjct: 71 agaagagcagggtccggctacggacgaaaacaaacgataaaa--caacatccatccttgc 14 Query: 281 tatcccaagctg 292 ||||||| |||| Sbjct: 13 tatcccaggctg 2
>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial sequence Length = 3804 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/72 (86%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 221 agaagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgc 280 |||||||||||||||||| || | ||||| ||||||| |||| | || ||||||||||| Sbjct: 71 agaagagcagggtccggctacggacgaaaacaaacgataaaa--caacatccatccttgc 14 Query: 281 tatcccaagctg 292 ||||||| |||| Sbjct: 13 tatcccaggctg 2
>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial sequence Length = 3943 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/72 (86%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 221 agaagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgc 280 |||||||||||||||||| || | ||||| ||||||| |||| | || ||||||||||| Sbjct: 71 agaagagcagggtccggctacggacgaaaacaaacgataaaa--caacatccatccttgc 14 Query: 281 tatcccaagctg 292 ||||||| |||| Sbjct: 13 tatcccaggctg 2
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial sequence Length = 3862 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/72 (86%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 221 agaagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgc 280 |||||||||||||||| | || | ||||| ||||||| |||| |||| ||||||||||| Sbjct: 71 agaagagcagggtccgactacagacgaaaacaaacgataaaa--cgacatccatccttgc 14 Query: 281 tatcccaagctg 292 ||||||| |||| Sbjct: 13 tatcccaggctg 2 Score = 50.1 bits (25), Expect = 0.006 Identities = 58/69 (84%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgatagggatgaaagtgcatctcgttgttttgaagg 198 ||||||||||| || ||| |||||| |||||||| ||| ||||||||| |||| | | | Sbjct: 246 atccttattttggctcgagggcctcaatagggatagaagcgcatctcgtcgtttcgcaag 187 Query: 199 aatggatat 207 ||||||||| Sbjct: 186 aatggatat 178
>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial sequence Length = 3622 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgatagggatgaaagtgcatctcgttgttttgaagg 198 |||||||||| ||| || |||||||| |||||| ||| |||||||||||||| | ||| Sbjct: 246 atccttatttcggcatgagggcctcgacagggatagaagcgcatctcgttgtttcgcagg 187 Query: 199 aatggatat 207 ||||||||| Sbjct: 186 aatggatat 178 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/72 (84%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 221 agaagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgc 280 |||||||||||||||| | || | ||||| ||||||| |||| ||| ||||||||||| Sbjct: 71 agaagagcagggtccgactacggacgaaaacaaacgataaaat--gacatccatccttgc 14 Query: 281 tatcccaagctg 292 ||||||| |||| Sbjct: 13 tatcccaggctg 2
>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial sequence Length = 3613 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgatagggatgaaagtgcatctcgttgttttgaagg 198 |||||||||| ||| || |||||||| |||||| ||| |||||||||||||| | ||| Sbjct: 246 atccttatttcggcatgagggcctcgacagggatagaagcgcatctcgttgtttcgcagg 187 Query: 199 aatggatat 207 ||||||||| Sbjct: 186 aatggatat 178 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/72 (84%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 221 agaagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgc 280 |||||||||||||||| | || | ||||| ||||||| |||| ||| ||||||||||| Sbjct: 71 agaagagcagggtccgactacggacgaaaacaaacgataaaat--gacatccatccttgc 14 Query: 281 tatcccaagctg 292 ||||||| |||| Sbjct: 13 tatcccaggctg 2
>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7731 Score = 58.0 bits (29), Expect = 2e-05 Identities = 78/92 (84%), Gaps = 3/92 (3%) Strand = Plus / Minus Query: 221 agaagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgc 280 |||||||||||||||| | || | ||||| ||||||| |||| ||| ||||||||||| Sbjct: 4232 agaagagcagggtccgactacggacgaaaacaaacgataaaat--gacatccatccttgc 4175 Query: 281 tatcccaagctgtcggcctagaacccatccta 312 ||||||| |||| | |||| |||||||||||| Sbjct: 4174 tatcccaggctg-ccgcctggaacccatccta 4144 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgatagggatgaaagtgcatctcgt 187 ||||||||||| |||||| |||||||| |||| | ||| ||||||||| Sbjct: 4407 atccttattttggcacgagggcctcgacaggggtagaagcgcatctcgt 4359
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7919 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 322 tcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaagacaaaccaatg 381 ||||||||| || ||||||| | ||||||| || || ||||||||||||| | |||| | Sbjct: 2882 tcatcttgcctgagatcccgctcggaagaagaacgattccatgaagaagatgagccaacg 2823 Query: 382 tagtcgaatgaatcctcac 400 | |||||| |||||||||| Sbjct: 2822 ttgtcgaacgaatcctcac 2804 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgatagggatgaaagtgcatctcgt 187 ||||||||||| |||||| |||||||| |||||| ||| ||||||||| Sbjct: 4518 atccttattttggcacgagggcctcgacagggatagaagcgcatctcgt 4470 Score = 46.1 bits (23), Expect = 0.090 Identities = 75/90 (83%), Gaps = 3/90 (3%) Strand = Plus / Minus Query: 223 aagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgcta 282 |||||||||||||| | || | ||||||||||| | |||| ||| ||||||||||||| Sbjct: 4342 aagagcagggtccgactacggacgaaatcaaacaataaaa--tgacatccatccttgcta 4285 Query: 283 tcccaagctgtcggcctagaacccatccta 312 ||| | |||| | |||||||| |||||||| Sbjct: 4284 tcctaggctg-ccgcctagaatccatccta 4256
>gb|AF029897.1|AF029897 Triticum aestivum acetyl-coenzyme A carboxylase (Acc-1,1) gene, nuclear gene encoding plastid protein, partial cds Length = 9285 Score = 52.0 bits (26), Expect = 0.001 Identities = 65/77 (84%), Gaps = 2/77 (2%) Strand = Plus / Minus Query: 322 tcatcttgcttgtgatcccgtttggaagaacaatgaatccatgaagaag--acaaaccaa 379 ||||||||| || ||||||| ||||||| ||||| |||||||||||| |||||| || Sbjct: 1002 tcatcttgcctgagatcccgcaaggaagaagaatgagtccatgaagaagaaacaaacgaa 943 Query: 380 tgtagtcgaatgaatcc 396 ||||||||| |||||| Sbjct: 942 cgtagtcgaacgaatcc 926
>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial sequence Length = 3764 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgatagggatgaaagtgcatctcgt 187 ||||||||||| |||||| |||||||| |||||| ||| ||||||||| Sbjct: 246 atccttattttggcacgagggcctcgacagggatagaagcgcatctcgt 198 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/72 (83%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 221 agaagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgc 280 |||||||||||||||| | || | ||||| |||| || |||| ||| ||||||||||| Sbjct: 71 agaagagcagggtccgactacggacgaaaacaaatgataaaat--gacatccatccttgc 14 Query: 281 tatcccaagctg 292 ||||||| |||| Sbjct: 13 tatcccaggctg 2
>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial sequence Length = 3774 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgatagggatgaaagtgcatctcgt 187 ||||||||||| |||||| |||||||| |||||| ||| ||||||||| Sbjct: 246 atccttattttggcacgagggcctcgacagggatagaagcgcatctcgt 198 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/72 (83%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 221 agaagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgc 280 |||||||||||||||| | || | ||||| |||| || |||| ||| ||||||||||| Sbjct: 71 agaagagcagggtccgactacggacgaaaacaaatgataaaat--gacatccatccttgc 14 Query: 281 tatcccaagctg 292 ||||||| |||| Sbjct: 13 tatcccaggctg 2
>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula, complete sequence Length = 3695 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgatagggatgaaagtgcatctcgt 187 ||||||||||| |||||| |||||||| |||||| ||| ||||||||| Sbjct: 246 atccttattttcgcacgagggcctcgacagggatagaagcgcatctcgt 198 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/72 (83%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 221 agaagagcagggtccggcaaccggcgaaatcaaacgagaaaaaccgacgtccatccttgc 280 ||||||||||||||| | || | ||||| ||||||| |||| ||| ||||||||||| Sbjct: 71 agaagagcagggtccatctacggacgaaaacaaacgataaaat--gacatccatccttgc 14 Query: 281 tatcccaagctg 292 ||||||| |||| Sbjct: 13 tatcccaggctg 2
>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula, complete sequence Length = 3683 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 139 atccttatttttgcacgaaggcctcgatagggatgaaagtgcatctcgt 187 ||||||||||| |||||| |||||||| |||||| ||| ||||||||| Sbjct: 246 atccttattttggcacgagggcctcgacagggatagaagcgcatctcgt 198
>gb|DQ257592.1| Hordeum vulgare subsp. vulgare clone 29-10-LB flanking T-DNA insertion sequence Length = 514 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Plus Query: 83 aatctagttggccatactatttcaatggatca 114 |||||||||||||| ||||||||||| ||||| Sbjct: 1 aatctagttggccagactatttcaatagatca 32
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 345 ggaagaacaatgaatccatgaagaagacaaaccaatgtagtcgaatgaatcctcac 400 ||||||| || || ||||||||| |||||||| | ||||||||||| |||||||| Sbjct: 73402 ggaagaagaacgagtccatgaagtagacaaacggacgtagtcgaatggatcctcac 73347
>gb|DQ175907.1| Hordeum vulgare subsp. vulgare clone 29-9A-LB flanking T-DNA insertion sequence Length = 514 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Plus Query: 83 aatctagttggccatactatttcaatggatca 114 |||||||||||||| ||||||||||| ||||| Sbjct: 1 aatctagttggccagactatttcaatagatca 32
>emb|AL162388.8| Human DNA sequence from clone RP11-373A6 on chromosome 9 Contains a NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) (NHP2L1) pseudogene and 2 CpG islands, complete sequence Length = 173881 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 356 gaatccatgaagaagacaaaccaa 379 |||||||||||||||||||||||| Sbjct: 108440 gaatccatgaagaagacaaaccaa 108417
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 aagaaatgtcaatctagttggcca 96 ||||||| |||||||||||||||| Sbjct: 239810 aagaaatatcaatctagttggcca 239787
>gb|AC139621.4| Artibeus jamaicensis clone 47H5, complete sequence Length = 103728 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aatggatcaggagagattta 125 |||||||||||||||||||| Sbjct: 53382 aatggatcaggagagattta 53363
>gb|AC145894.3| Pan troglodytes BAC clone RP43-8D18 from 7, complete sequence Length = 199372 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ttacaacatgtagaagagca 229 |||||||||||||||||||| Sbjct: 43323 ttacaacatgtagaagagca 43342
>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon, partial sequence Length = 4001 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 265 cgacgtccatccttgctatcccaagctg 292 |||| |||||||||||||||||| |||| Sbjct: 29 cgacatccatccttgctatcccaggctg 2
>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula retrotransposon, partial sequence Length = 3935 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 265 cgacgtccatccttgctatcccaagctg 292 |||| |||||||||||||||||| |||| Sbjct: 29 cgacatccatccttgctatcccaggctg 2
>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial sequence Length = 3997 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 265 cgacgtccatccttgctatcccaagctg 292 |||| |||||||||||||||||| |||| Sbjct: 29 cgacatccatccttgctatcccaggctg 2
>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial sequence Length = 4120 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 265 cgacgtccatccttgctatcccaagctg 292 |||| |||||||||||||||||| |||| Sbjct: 29 cgacatccatccttgctatcccaggctg 2
>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial sequence Length = 2924 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 265 cgacgtccatccttgctatcccaagctg 292 |||| |||||||||||||||||| |||| Sbjct: 29 cgacatccatccttgctatcccaggctg 2
>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial sequence Length = 2923 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 265 cgacgtccatccttgctatcccaagctg 292 |||| |||||||||||||||||| |||| Sbjct: 29 cgacatccatccttgctatcccaggctg 2
>emb|Z70682.1|CEF08G5 Caenorhabditis elegans Cosmid F08G5, complete sequence Length = 32784 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cgaaatcaaacgagaaaaac 264 |||||||||||||||||||| Sbjct: 7702 cgaaatcaaacgagaaaaac 7683
>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence Length = 200908 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 aacaatgaatccatgaagaa 369 |||||||||||||||||||| Sbjct: 58236 aacaatgaatccatgaagaa 58255
>gb|AC146110.2| Pan troglodytes BAC clone RP43-22L15 from 7, complete sequence Length = 185754 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ttacaacatgtagaagagca 229 |||||||||||||||||||| Sbjct: 54743 ttacaacatgtagaagagca 54762
>emb|BX649291.3| Mouse DNA sequence from clone RP23-134H3 on chromosome 4, complete sequence Length = 19438 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 aacaatgaatccatgaagaa 369 |||||||||||||||||||| Sbjct: 10062 aacaatgaatccatgaagaa 10081
>gb|AC121541.31| Mus musculus chromosome 5, clone RP24-132B11, complete sequence Length = 171770 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ccttctgttacaaggatata 28 |||||||||||||||||||| Sbjct: 78396 ccttctgttacaaggatata 78377
>gb|AC021039.12| Homo sapiens chromosome 10 clone RP11-478K18, complete sequence Length = 139537 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gagatttaggaagccatcat 137 |||||||||||||||||||| Sbjct: 53682 gagatttaggaagccatcat 53701
>gb|DP000001.1| Artibeus jamaicensis target 1 genomic scaffold Length = 584809 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aatggatcaggagagattta 125 |||||||||||||||||||| Sbjct: 224213 aatggatcaggagagattta 224194
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 345 ggaagaacaatgaatccatgaagaagacaaac 376 ||||||| || || |||||||||||||||||| Sbjct: 85816 ggaagaagaacgagtccatgaagaagacaaac 85847
>ref|NM_001027950.1| Caenorhabditis elegans F08G5.3b (F08G5.3) mRNA, complete cds Length = 677 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cgaaatcaaacgagaaaaac 264 |||||||||||||||||||| Sbjct: 267 cgaaatcaaacgagaaaaac 286
>ref|NM_001027949.1| Caenorhabditis elegans F08G5.3a (F08G5.3) mRNA, complete cds Length = 660 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cgaaatcaaacgagaaaaac 264 |||||||||||||||||||| Sbjct: 244 cgaaatcaaacgagaaaaac 263
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 40.1 bits (20), Expect = 5.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 345 ggaagaacaatgaatccatgaagaagacaaaccaatgtagtcgaatgaatcctcac 400 ||||||| || || |||| |||||||||||| |||||| |||| |||||||||| Sbjct: 83950 ggaagaagaacgagtccaagaagaagacaaatggatgtagacgaacgaatcctcac 83895
>emb|AL110498.1|CEY64G10A Caenorhabditis elegans YAC Y64G10A, complete sequence Length = 87428 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 atgatcatcttgcttgtgat 337 |||||||||||||||||||| Sbjct: 52457 atgatcatcttgcttgtgat 52438
>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete sequence Length = 216415 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 tacaacatgtagaagagcagggtc 234 ||||||||| |||||||||||||| Sbjct: 37161 tacaacatgcagaagagcagggtc 37138 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,656,115 Number of Sequences: 3902068 Number of extensions: 3656115 Number of successful extensions: 70872 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70718 Number of HSP's gapped (non-prelim): 127 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
