ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14c11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ345035.1|HVU345035 Hordeum vulgare partial mRNA for monodehydroascorbate reductase Length = 1250 Score = 1423 bits (718), Expect = 0.0 Identities = 736/742 (99%) Strand = Plus / Minus Query: 11 aatatattatgagatttctatacttgtttacacatgaggcaacgattacactttcgtaca 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1229 aatatattatgagatttctatacttgtttacacatgaggcaacgattacactttcgtaca 1170 Query: 71 ggtttgtacagggtttcctccaagtaactgtatgtaaacaatagatcttcctccttcctt 130 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1169 ggtttatacagggtttcctccaagtaactgtatgtaaacaatagatcttcctccttcctt 1110 Query: 131 ccagcagtttatcccagccgcccgcaaaccgatcccgggtttcaccacctgcggcgcttc 190 ||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| Sbjct: 1109 ccatcagtttatcccagccgcccgcgaaccgttccggggtttcaccacctgcggcgcttc 1050 Query: 191 ctgccgtaccaataaccgaacgcggagatcgacactgccgcaacgacccctgccgttgca 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1049 ctgccgtaccaataaccgaacgcggagatcgacactgccgcaacgacccctgccgttgca 990 Query: 251 taccatacgaaggtgggcttttcgccgagggtaaccccgctgtcaggcacctctttcttg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 989 taccatacgaaggtgggcttttcgccgagggtaaccccgctgtcaggcacctctttcttg 930 Query: 311 ctttcctggatggcaaacgctaggccttgtctttcaagttcagacatgtccgaggccttg 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 929 ctttcctggatggcaaacgctaggccttgtctttcaagttcagacatgtccgaggccttg 870 Query: 371 gttttacgccggacaaccaccgacaatgcctcgtagtcgtcccggttcccaccttccagg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 869 gttttacgccggacaaccaccgacaatgcctcgtagtcgtcccggttcccaccttccagg 810 Query: 431 aacgcgcccgtgatctggcccttactgacccagtatgcgccgaacctcgggctgttgctt 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 809 aacgcgcccgtgatctggcccttactgacccagtatgcgccgaacctcgggctgttgctt 750 Query: 491 gtgaagtcgccgtagtgaattacttctccgacattgtccccgtagaactgccaggacagt 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 749 gtgaagtcgccgtagtgaattacttctccgacattgtccccgtagaactgccaggacagt 690 Query: 551 gtgaagactcttgagtagaagaatggcaggtaatcgacgtccctggttttcgaaggctcc 610 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 689 gtgaagactcttgagtagaagaatggtaggtaatcgacgtccctggttttcgaaggctcc 630 Query: 611 aggatggctgcgacagcgtgcctggcggttctacgagccgagtcaacatgttcaagccgt 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 629 aggatggctgcgacagcgtgcctggcggttctacgagccgagtcaacatgttcaagccgt 570 Query: 671 cggacatcgccgtcaaagagcttgatggggaacgcggcaacatcaccaacagcatacacc 730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 cggacatcgccgtcaaagagcttgatggggaacgcggcaacatcaccaacagcatacacc 510 Query: 731 gagctgtcgctggtttgcattt 752 |||||||||||||||||||||| Sbjct: 509 gagctgtcgctggtttgcattt 488
>gb|BT009417.1| Triticum aestivum clone wlmk1.pk0007.f9:fis, full insert mRNA sequence Length = 1821 Score = 874 bits (441), Expect = 0.0 Identities = 546/581 (93%) Strand = Plus / Minus Query: 172 tcaccacctgcggcgcttcctgccgtaccaataaccgaacgcggagatcgacactgccgc 231 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 1583 tcaccacctgcggcgcttcctgccgtaccaataaccgaacgcggagatcgagacggccgc 1524 Query: 232 aacgacccctgccgttgcataccatacgaaggtgggcttttcgccgagggtaaccccgct 291 ||| ||||| ||||| || ||||| |||||||||||||| ||||||||||| |||||||| Sbjct: 1523 aacaacccccgccgtcgcgtaccacacgaaggtgggcttctcgccgagggtgaccccgct 1464 Query: 292 gtcaggcacctctttcttgctttcctggatggcaaacgctaggccttgtctttcaagttc 351 ||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct: 1463 gtcaggcacgtctttcttgctttcctggatggcaaatgccaggccttgtctttcaagttc 1404 Query: 352 agacatgtccgaggccttggttttacgccggacaaccaccgacaatgcctcgtagtcgtc 411 ||||||||||||| ||||||||||||||| |||||||||||| || |||||||||||||| Sbjct: 1403 agacatgtccgagaccttggttttacgccagacaaccaccgataacgcctcgtagtcgtc 1344 Query: 412 ccggttcccaccttccaggaacgcgcccgtgatctggcccttactgacccagtatgcgcc 471 ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1343 ccggtccccgccttccaggaacgcgcccgtgatctggcccttgctgacccagtatgcgcc 1284 Query: 472 gaacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtcccc 531 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 1283 gaaccgagggctgttgctcgtgaagtcgccgtagtgaattacttctccgacattgtctcc 1224 Query: 532 gtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtc 591 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1223 atagaactgccaggacagtgtgaagactctggagtagaagaatggcaggtaatcgacgtc 1164 Query: 592 cctggttttcgaaggctccaggatggctgcgacagcgtgcctggcggttctacgagccga 651 |||| |||| ||||||||||||||||||||||| || || |||||||||||||||||||| Sbjct: 1163 cctgcttttggaaggctccaggatggctgcgacggcatgtctggcggttctacgagccga 1104 Query: 652 gtcaacatgttcaagccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaac 711 ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 1103 gtcaacatgctcaagccgtcggatatcaccgtcaaagagcttgatggggaacgcggcaac 1044 Query: 712 atcaccaacagcatacaccgagctgtcgctggtttgcattt 752 |||||||||||||||||| ||||||||||| |||||||||| Sbjct: 1043 atcaccaacagcatacacggagctgtcgctagtttgcattt 1003 Score = 48.1 bits (24), Expect = 0.042 Identities = 47/52 (90%), Gaps = 2/52 (3%) Strand = Plus / Minus Query: 25 tttctatacttgtttacac-atgaggcaacgattacactttcgtacaggttt 75 |||||||||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct: 1691 tttctatacttgtttacagtatgagacaaa-attacactttcgtacaggttt 1641
>gb|AY106646.1| Zea mays PCO091252 mRNA sequence Length = 1867 Score = 210 bits (106), Expect = 5e-51 Identities = 241/286 (84%) Strand = Plus / Minus Query: 456 tgacccagtatgcgccgaacctcgggctgttgcttgtgaagtcgccgtagtgaattactt 515 ||||||| ||||| ||||||||||| ||| ||||||||||||| || |||| | |||| Sbjct: 1273 tgacccaatatgcaccgaacctcggactgctgcttgtgaagtctccaaagtggaccactt 1214 Query: 516 ctccgacattgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatg 575 | |||||||| ||||| ||||| |||||||||| ||||| ||||| ||||||||||| | Sbjct: 1213 ccccgacattatccccatagaattgccaggacaacgtgaacactctggagtagaagaacg 1154 Query: 576 gcaggtaatcgacgtccctggttttcgaaggctccaggatggctgcgacagcgtgcctgg 635 |||||||||||| |||||| || || ||||| |||| ||||| || ||||| || || Sbjct: 1153 gcaggtaatcgatgtccctcgtctttgaaggatccaagatggaggcaacagcatgtctac 1094 Query: 636 cggttctacgagccgagtcaacatgttcaagccgtcggacatcgccgtcaaagagcttga 695 | ||||||||||| ||||| ||||| || |||||||||| ||| ||||||| ||||||| Sbjct: 1093 cagttctacgagctgagtccacatgctcgagccgtcggatatcatcgtcaaaaagcttga 1034 Query: 696 tggggaacgcggcaacatcaccaacagcatacaccgagctgtcgct 741 ||||||||||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 1033 tggggaacgcggccacatcgccaacggcatacacagagctgtcgct 988 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 172 tcaccacctgcggcgcttcctgccgtaccaata 204 |||||||||||||||||||||||| |||||||| Sbjct: 1557 tcaccacctgcggcgcttcctgccataccaata 1525
>ref|XM_467388.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1822 Score = 194 bits (98), Expect = 3e-46 Identities = 215/254 (84%) Strand = Plus / Minus Query: 473 aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 532 ||||| |||||| || |||||||||| || |||||| ||||||||| ||||| ||| Sbjct: 1306 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 1247 Query: 533 tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 592 ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| |||| Sbjct: 1246 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 1187 Query: 593 ctggttttcgaaggctccaggatggctgcgacagcgtgcctggcggttctacgagccgag 652 | ||||| |||||||||||||||||||| ||||| || || || ||||| ||||| ||| Sbjct: 1186 ttagtttttgaaggctccaggatggctgcaacagcatgtctcgctgttctgcgagctgag 1127 Query: 653 tcaacatgttcaagccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaaca 712 |||||||| ||||||||||| | | | || |||||||||||||| ||||| || |||||| Sbjct: 1126 tcaacatgctcaagccgtcgtataacaccatcaaagagcttgatagggaaggcagcaaca 1067 Query: 713 tcaccaacagcata 726 || ||||| ||||| Sbjct: 1066 tcgccaacggcata 1053 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 170 tttcaccacctgcggcgcttcctgccgtaccaataacc 207 ||||||||||| ||||| |||||||||||||||||||| Sbjct: 1609 tttcaccacctacggcgtttcctgccgtaccaataacc 1572
>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence Length = 158050 Score = 194 bits (98), Expect = 3e-46 Identities = 215/254 (84%) Strand = Plus / Minus Query: 473 aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 532 ||||| |||||| || |||||||||| || |||||| ||||||||| ||||| ||| Sbjct: 113655 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 113596 Query: 533 tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 592 ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| |||| Sbjct: 113595 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 113536 Query: 593 ctggttttcgaaggctccaggatggctgcgacagcgtgcctggcggttctacgagccgag 652 | ||||| |||||||||||||||||||| ||||| || || || ||||| ||||| ||| Sbjct: 113535 ttagtttttgaaggctccaggatggctgcaacagcatgtctcgctgttctgcgagctgag 113476 Query: 653 tcaacatgttcaagccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaaca 712 |||||||| ||||||||||| | | | || |||||||||||||| ||||| || |||||| Sbjct: 113475 tcaacatgctcaagccgtcgtataacaccatcaaagagcttgatagggaaggcagcaaca 113416 Query: 713 tcaccaacagcata 726 || ||||| ||||| Sbjct: 113415 tcgccaacggcata 113402 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 524 ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 583 ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| Sbjct: 116966 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 116907 Query: 584 tcga 587 |||| Sbjct: 116906 tcga 116903 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 170 tttcaccacctgcggcgcttcctgccgtaccaataacc 207 ||||||||||| ||||| |||||||||||||||||||| Sbjct: 113958 tttcaccacctacggcgtttcctgccgtaccaataacc 113921 Score = 42.1 bits (21), Expect = 2.6 Identities = 57/69 (82%) Strand = Plus / Minus Query: 665 agccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaacatcaccaacagca 724 ||||| ||||| |||||| | || ||||||| |||||||||||| || || || || || Sbjct: 116822 agccggcggacgtcgccgccgaacagcttgacggggaacgcggccacgtcgcccacggcg 116763 Query: 725 tacaccgag 733 ||||||||| Sbjct: 116762 tacaccgag 116754
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 194 bits (98), Expect = 3e-46 Identities = 215/254 (84%) Strand = Plus / Plus Query: 473 aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 532 ||||| |||||| || |||||||||| || |||||| ||||||||| ||||| ||| Sbjct: 29248976 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 29249035 Query: 533 tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 592 ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| |||| Sbjct: 29249036 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 29249095 Query: 593 ctggttttcgaaggctccaggatggctgcgacagcgtgcctggcggttctacgagccgag 652 | ||||| |||||||||||||||||||| ||||| || || || ||||| ||||| ||| Sbjct: 29249096 ttagtttttgaaggctccaggatggctgcaacagcatgtctcgctgttctgcgagctgag 29249155 Query: 653 tcaacatgttcaagccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaaca 712 |||||||| ||||||||||| | | | || |||||||||||||| ||||| || |||||| Sbjct: 29249156 tcaacatgctcaagccgtcgtataacaccatcaaagagcttgatagggaaggcagcaaca 29249215 Query: 713 tcaccaacagcata 726 || ||||| ||||| Sbjct: 29249216 tcgccaacggcata 29249229 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 524 ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 583 ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| Sbjct: 29245665 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 29245724 Query: 584 tcga 587 |||| Sbjct: 29245725 tcga 29245728 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 170 tttcaccacctgcggcgcttcctgccgtaccaataacc 207 ||||||||||| ||||| |||||||||||||||||||| Sbjct: 29248673 tttcaccacctacggcgtttcctgccgtaccaataacc 29248710 Score = 42.1 bits (21), Expect = 2.6 Identities = 57/69 (82%) Strand = Plus / Plus Query: 665 agccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaacatcaccaacagca 724 ||||| ||||| |||||| | || ||||||| |||||||||||| || || || || || Sbjct: 29245809 agccggcggacgtcgccgccgaacagcttgacggggaacgcggccacgtcgcccacggcg 29245868 Query: 725 tacaccgag 733 ||||||||| Sbjct: 29245869 tacaccgag 29245877
>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16 Length = 164373 Score = 194 bits (98), Expect = 3e-46 Identities = 215/254 (84%) Strand = Plus / Plus Query: 473 aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 532 ||||| |||||| || |||||||||| || |||||| ||||||||| ||||| ||| Sbjct: 46321 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 46380 Query: 533 tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 592 ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| |||| Sbjct: 46381 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 46440 Query: 593 ctggttttcgaaggctccaggatggctgcgacagcgtgcctggcggttctacgagccgag 652 | ||||| |||||||||||||||||||| ||||| || || || ||||| ||||| ||| Sbjct: 46441 ttagtttttgaaggctccaggatggctgcaacagcatgtctcgctgttctgcgagctgag 46500 Query: 653 tcaacatgttcaagccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaaca 712 |||||||| ||||||||||| | | | || |||||||||||||| ||||| || |||||| Sbjct: 46501 tcaacatgctcaagccgtcgtataacaccatcaaagagcttgatagggaaggcagcaaca 46560 Query: 713 tcaccaacagcata 726 || ||||| ||||| Sbjct: 46561 tcgccaacggcata 46574 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 524 ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 583 ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| Sbjct: 43010 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 43069 Query: 584 tcga 587 |||| Sbjct: 43070 tcga 43073 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 170 tttcaccacctgcggcgcttcctgccgtaccaataacc 207 ||||||||||| ||||| |||||||||||||||||||| Sbjct: 46018 tttcaccacctacggcgtttcctgccgtaccaataacc 46055 Score = 42.1 bits (21), Expect = 2.6 Identities = 57/69 (82%) Strand = Plus / Plus Query: 665 agccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaacatcaccaacagca 724 ||||| ||||| |||||| | || ||||||| |||||||||||| || || || || || Sbjct: 43154 agccggcggacgtcgccgccgaacagcttgacggggaacgcggccacgtcgcccacggcg 43213 Query: 725 tacaccgag 733 ||||||||| Sbjct: 43214 tacaccgag 43222
>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0680A05 Length = 168092 Score = 194 bits (98), Expect = 3e-46 Identities = 215/254 (84%) Strand = Plus / Plus Query: 473 aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 532 ||||| |||||| || |||||||||| || |||||| ||||||||| ||||| ||| Sbjct: 138944 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 139003 Query: 533 tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 592 ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| |||| Sbjct: 139004 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 139063 Query: 593 ctggttttcgaaggctccaggatggctgcgacagcgtgcctggcggttctacgagccgag 652 | ||||| |||||||||||||||||||| ||||| || || || ||||| ||||| ||| Sbjct: 139064 ttagtttttgaaggctccaggatggctgcaacagcatgtctcgctgttctgcgagctgag 139123 Query: 653 tcaacatgttcaagccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaaca 712 |||||||| ||||||||||| | | | || |||||||||||||| ||||| || |||||| Sbjct: 139124 tcaacatgctcaagccgtcgtataacaccatcaaagagcttgatagggaaggcagcaaca 139183 Query: 713 tcaccaacagcata 726 || ||||| ||||| Sbjct: 139184 tcgccaacggcata 139197 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 524 ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 583 ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| Sbjct: 135633 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 135692 Query: 584 tcga 587 |||| Sbjct: 135693 tcga 135696 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 170 tttcaccacctgcggcgcttcctgccgtaccaataacc 207 ||||||||||| ||||| |||||||||||||||||||| Sbjct: 138641 tttcaccacctacggcgtttcctgccgtaccaataacc 138678 Score = 42.1 bits (21), Expect = 2.6 Identities = 57/69 (82%) Strand = Plus / Plus Query: 665 agccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaacatcaccaacagca 724 ||||| ||||| |||||| | || ||||||| |||||||||||| || || || || || Sbjct: 135777 agccggcggacgtcgccgccgaacagcttgacggggaacgcggccacgtcgcccacggcg 135836 Query: 725 tacaccgag 733 ||||||||| Sbjct: 135837 tacaccgag 135845
>dbj|AK065585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M23, full insert sequence Length = 1821 Score = 194 bits (98), Expect = 3e-46 Identities = 215/254 (84%) Strand = Plus / Minus Query: 473 aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 532 ||||| |||||| || |||||||||| || |||||| ||||||||| ||||| ||| Sbjct: 1305 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 1246 Query: 533 tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 592 ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| |||| Sbjct: 1245 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 1186 Query: 593 ctggttttcgaaggctccaggatggctgcgacagcgtgcctggcggttctacgagccgag 652 | ||||| |||||||||||||||||||| ||||| || || || ||||| ||||| ||| Sbjct: 1185 ttagtttttgaaggctccaggatggctgcaacagcatgtctcgctgttctgcgagctgag 1126 Query: 653 tcaacatgttcaagccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaaca 712 |||||||| ||||||||||| | | | || |||||||||||||| ||||| || |||||| Sbjct: 1125 tcaacatgctcaagccgtcgtataacaccatcaaagagcttgatagggaaggcagcaaca 1066 Query: 713 tcaccaacagcata 726 || ||||| ||||| Sbjct: 1065 tcgccaacggcata 1052 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 170 tttcaccacctgcggcgcttcctgccgtaccaataacc 207 ||||||||||| ||||| |||||||||||||||||||| Sbjct: 1608 tttcaccacctacggcgtttcctgccgtaccaataacc 1571
>dbj|AK062096.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H12, full insert sequence Length = 1246 Score = 194 bits (98), Expect = 3e-46 Identities = 215/254 (84%) Strand = Plus / Minus Query: 473 aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 532 ||||| |||||| || |||||||||| || |||||| ||||||||| ||||| ||| Sbjct: 748 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 689 Query: 533 tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 592 ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| |||| Sbjct: 688 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 629 Query: 593 ctggttttcgaaggctccaggatggctgcgacagcgtgcctggcggttctacgagccgag 652 | ||||| |||||||||||||||||||| ||||| || || || ||||| ||||| ||| Sbjct: 628 ttagtttttgaaggctccaggatggctgcaacagcatgtctcgctgttctgcgagctgag 569 Query: 653 tcaacatgttcaagccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaaca 712 |||||||| ||||||||||| | | | || |||||||||||||| ||||| || |||||| Sbjct: 568 tcaacatgctcaagccgtcgtataacaccatcaaagagcttgatagggaaggcagcaaca 509 Query: 713 tcaccaacagcata 726 || ||||| ||||| Sbjct: 508 tcgccaacggcata 495 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 170 tttcaccacctgcggcgcttcctgccgtaccaataacc 207 ||||||||||| ||||| |||||||||||||||||||| Sbjct: 1051 tttcaccacctacggcgtttcctgccgtaccaataacc 1014
>ref|XM_467387.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1440 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 524 ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 583 ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| Sbjct: 1082 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 1023 Query: 584 tcga 587 |||| Sbjct: 1022 tcga 1019 Score = 42.1 bits (21), Expect = 2.6 Identities = 57/69 (82%) Strand = Plus / Minus Query: 665 agccgtcggacatcgccgtcaaagagcttgatggggaacgcggcaacatcaccaacagca 724 ||||| ||||| |||||| | || ||||||| |||||||||||| || || || || || Sbjct: 938 agccggcggacgtcgccgccgaacagcttgacggggaacgcggccacgtcgcccacggcg 879 Query: 725 tacaccgag 733 ||||||||| Sbjct: 878 tacaccgag 870
>gb|DQ159869.1| Physcomitrella patens monodehydroascorbate reductase I (Mdhar1) gene, promoter region and complete cds Length = 6026 Score = 52.0 bits (26), Expect = 0.003 Identities = 56/66 (84%) Strand = Plus / Minus Query: 521 acattgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcagg 580 |||||||| |||||||||||||| ||||| ||||| | |||||||||||||| ||| Sbjct: 5547 acattgtcgccgtagaactgccacgacagattgaaggagcgggagtagaagaatgggagg 5488 Query: 581 taatcg 586 |||||| Sbjct: 5487 taatcg 5482
>gb|DQ411856.1| Lactobacillus casei ATCC 334 hypothetical protein (Lcas001), putative transposase (Lcas002), and putative transposase (Lcas003) genes, complete cds; and Lactobacillus casei phage Lca1, complete sequence Length = 52470 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 gttgcttgtgaagtcgccgta 504 ||||||||||||||||||||| Sbjct: 10947 gttgcttgtgaagtcgccgta 10967
>gb|AC113372.2| Homo sapiens chromosome 5 clone RP11-160H11, complete sequence Length = 98328 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 aactgtatgtaaacaatagat 116 ||||||||||||||||||||| Sbjct: 76165 aactgtatgtaaacaatagat 76145
>gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, complete sequence Length = 104475 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 aactgtatgtaaacaatagat 116 ||||||||||||||||||||| Sbjct: 28447 aactgtatgtaaacaatagat 28427 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,171,072 Number of Sequences: 3902068 Number of extensions: 6171072 Number of successful extensions: 112923 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112845 Number of HSP's gapped (non-prelim): 75 length of query: 752 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 729 effective length of database: 17,143,297,704 effective search space: 12497464026216 effective search space used: 12497464026216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
