ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13n11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY603974.1| Oryza sativa (indica cultivar-group) BTH-induced protein phosphatase 1 (bipp2C1) mRNA, complete cds Length = 1900 Score = 91.7 bits (46), Expect = 1e-15 Identities = 88/102 (86%) Strand = Plus / Minus Query: 152 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 211 ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| ||||| Sbjct: 1721 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 1662 Query: 212 gcccagatagccttctgcgagcgccgcgtccgagaacgggct 253 |||||||| || |||| || |||||||| ||||| ||||| Sbjct: 1661 acccagatacccaactgcaagagccgcgtcagagaaggggct 1620
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 91.7 bits (46), Expect = 1e-15 Identities = 88/102 (86%) Strand = Plus / Minus Query: 152 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 211 ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| ||||| Sbjct: 4801843 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 4801784 Query: 212 gcccagatagccttctgcgagcgccgcgtccgagaacgggct 253 |||||||| || |||| || |||||||| ||||| ||||| Sbjct: 4801783 acccagatacccaactgcaagagccgcgtcagagaaggggct 4801742
>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence Length = 129658 Score = 91.7 bits (46), Expect = 1e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 152 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 211 ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| ||||| Sbjct: 33612 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 33671 Query: 212 gcccagatagccttctgcgagcgccgcgtccgagaacgggct 253 |||||||| || |||| || |||||||| ||||| ||||| Sbjct: 33672 acccagatacccaactgcaagagccgcgtcagagaaggggct 33713
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 91.7 bits (46), Expect = 1e-15 Identities = 88/102 (86%) Strand = Plus / Minus Query: 152 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 211 ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| ||||| Sbjct: 4801958 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 4801899 Query: 212 gcccagatagccttctgcgagcgccgcgtccgagaacgggct 253 |||||||| || |||| || |||||||| ||||| ||||| Sbjct: 4801898 acccagatacccaactgcaagagccgcgtcagagaaggggct 4801857
>dbj|AK068957.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003M17, full insert sequence Length = 2158 Score = 91.7 bits (46), Expect = 1e-15 Identities = 88/102 (86%) Strand = Plus / Minus Query: 152 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 211 ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| ||||| Sbjct: 1971 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 1912 Query: 212 gcccagatagccttctgcgagcgccgcgtccgagaacgggct 253 |||||||| || |||| || |||||||| ||||| ||||| Sbjct: 1911 acccagatacccaactgcaagagccgcgtcagagaaggggct 1870
>gb|AY107898.1| Zea mays PCO065177 mRNA sequence Length = 1316 Score = 89.7 bits (45), Expect = 4e-15 Identities = 90/105 (85%) Strand = Plus / Minus Query: 152 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 211 ||||||||||| |||||| || || ||||| ||||||||||||| |||||| |||||||| Sbjct: 1267 ttcagatttccgaacaatcgatacaacaaccgttacatcatccagcttgccgccggagta 1208 Query: 212 gcccagatagccttctgcgagcgccgcgtccgagaacgggctcct 256 |||||| || || | ||||| || | |||||||||||||||||| Sbjct: 1207 gcccaggtacccagccgcgagagcggagtccgagaacgggctcct 1163
>dbj|AK072473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114B22, full insert sequence Length = 2756 Score = 75.8 bits (38), Expect = 6e-11 Identities = 77/90 (85%) Strand = Plus / Minus Query: 164 aacaatggacacgacaactgttacatcatccaacttgcccccggagtagcccagatagcc 223 ||||| ||| || ||||||||||||||||||| ||||||||| ||||| |||||||| || Sbjct: 1920 aacaacggatacaacaactgttacatcatccagcttgcccccagagtaacccagataccc 1861 Query: 224 ttctgcgagcgccgcgtccgagaacgggct 253 |||| || |||||||| ||||| ||||| Sbjct: 1860 aactgcaagagccgcgtcagagaaggggct 1831
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 60.0 bits (30), Expect = 4e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Minus Query: 42 ttcttcagcccaa-atgcaagcattcggactcgatccgaatatggc 86 ||||||||||||| ||||||||||| |||||| ||||||||||||| Sbjct: 431381 ttcttcagcccaagatgcaagcatttggactccatccgaatatggc 431336
>ref|NM_196105.1| Oryza sativa (japonica cultivar-group) putative protein phosphatase 2C (OJ1003C07.6), mRNA Length = 1491 Score = 46.1 bits (23), Expect = 0.057 Identities = 26/27 (96%) Strand = Plus / Minus Query: 152 ttcagatttcctaacaatggacacgac 178 |||||||||||| |||||||||||||| Sbjct: 1485 ttcagatttcctgacaatggacacgac 1459
>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence Length = 115188 Score = 46.1 bits (23), Expect = 0.057 Identities = 26/27 (96%) Strand = Plus / Minus Query: 152 ttcagatttcctaacaatggacacgac 178 |||||||||||| |||||||||||||| Sbjct: 44642 ttcagatttcctgacaatggacacgac 44616
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.057 Identities = 26/27 (96%) Strand = Plus / Plus Query: 152 ttcagatttcctaacaatggacacgac 178 |||||||||||| |||||||||||||| Sbjct: 11114415 ttcagatttcctgacaatggacacgac 11114441
>dbj|AK100049.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155A10, full insert sequence Length = 1876 Score = 46.1 bits (23), Expect = 0.057 Identities = 26/27 (96%) Strand = Plus / Minus Query: 152 ttcagatttcctaacaatggacacgac 178 |||||||||||| |||||||||||||| Sbjct: 1450 ttcagatttcctgacaatggacacgac 1424
>dbj|AK071987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J19, full insert sequence Length = 1857 Score = 46.1 bits (23), Expect = 0.057 Identities = 26/27 (96%) Strand = Plus / Minus Query: 152 ttcagatttcctaacaatggacacgac 178 |||||||||||| |||||||||||||| Sbjct: 1511 ttcagatttcctgacaatggacacgac 1485
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.057 Identities = 26/27 (96%) Strand = Plus / Plus Query: 152 ttcagatttcctaacaatggacacgac 178 |||||||||||| |||||||||||||| Sbjct: 11120855 ttcagatttcctgacaatggacacgac 11120881
>gb|AC160061.6| Mus musculus 10 BAC RP24-496L10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 174662 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 taactctctgttcttttctta 25 ||||||||||||||||||||| Sbjct: 86385 taactctctgttcttttctta 86405
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 cgggctcctcccggacccggaccc 271 |||||| ||||||||||||||||| Sbjct: 441280 cgggcttctcccggacccggaccc 441257
>gb|AY500156.1| Lycopersicon esculentum MAP3Ka mRNA, complete cds Length = 1945 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ttacatcatccaacttgccc 203 |||||||||||||||||||| Sbjct: 540 ttacatcatccaacttgccc 521
>emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G19 on chromosome 6q14.1-14.3 Contains the 3' part of a novel gene, complete sequence Length = 88509 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tctgttcttttcttaggcca 30 |||||||||||||||||||| Sbjct: 20313 tctgttcttttcttaggcca 20294
>gb|AC146675.3| Callithrix jacchus clone CH259-444F21, complete sequence Length = 188829 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 cgggctcctcccggacccggaccc 271 |||||| ||||||||||||||||| Sbjct: 111675 cgggcttctcccggacccggaccc 111652
>emb|AL160282.18| Human DNA sequence from clone RP11-315I20 on chromosome 1q12.1-21.3, complete sequence Length = 191594 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ctcctcccggacccggaccc 271 |||||||||||||||||||| Sbjct: 110390 ctcctcccggacccggaccc 110371 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,726,165 Number of Sequences: 3902068 Number of extensions: 1726165 Number of successful extensions: 34981 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34916 Number of HSP's gapped (non-prelim): 65 length of query: 271 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 249 effective length of database: 17,147,199,772 effective search space: 4269652743228 effective search space used: 4269652743228 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
