ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13n10 |
|---|---|
| Clone Library Name | barley_pub |
>VPS26_ARATH (Q9T091) Vacuolar protein sorting 26 homolog (VPS26 protein| homolog) Length = 303 Score = 237 bits (604), Expect = 3e-62 Identities = 114/129 (88%), Positives = 124/129 (96%) Frame = -3 Query: 682 EDCLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETL 503 EDCLHIEFEY+KSKYHLKDVI+GKIYFLLVRIK+KNM+LEIRRRESTG+G NT+VETETL Sbjct: 171 EDCLHIEFEYNKSKYHLKDVILGKIYFLLVRIKMKNMDLEIRRRESTGAGANTHVETETL 230 Query: 502 AKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQ 323 AKFELMDG PVRGESIPVRLFL PY+LTPT+RNINNKFSVKYYLNLVLVDEEDRRYFKQQ Sbjct: 231 AKFELMDGTPVRGESIPVRLFLAPYDLTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQ 290 Query: 322 EINMFRLDE 296 EI ++RL E Sbjct: 291 EITLYRLKE 299
>VPS26_RAT (Q6AY86) Vacuolar protein sorting 26 (Vesicle protein sorting 26)| Length = 327 Score = 202 bits (513), Expect = 1e-51 Identities = 95/126 (75%), Positives = 115/126 (91%) Frame = -3 Query: 682 EDCLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETL 503 EDCLHIEFEY+KSKYHLKDVIVGKIYFLLVRIKI++MEL++ ++E TG GP+T ETET+ Sbjct: 171 EDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETI 230 Query: 502 AKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQ 323 AK+E+MDGAPV+GESIP+RLFL Y+ TPT R++N KFSV+Y+LNLVLVDEEDRRYFKQQ Sbjct: 231 AKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQ 290 Query: 322 EINMFR 305 EI ++R Sbjct: 291 EIILWR 296
>VPS26_MOUSE (P40336) Vacuolar protein sorting 26 (Vesicle protein sorting 26)| (H58 protein) (H beta 58) Length = 327 Score = 202 bits (513), Expect = 1e-51 Identities = 95/126 (75%), Positives = 115/126 (91%) Frame = -3 Query: 682 EDCLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETL 503 EDCLHIEFEY+KSKYHLKDVIVGKIYFLLVRIKI++MEL++ ++E TG GP+T ETET+ Sbjct: 171 EDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETI 230 Query: 502 AKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQ 323 AK+E+MDGAPV+GESIP+RLFL Y+ TPT R++N KFSV+Y+LNLVLVDEEDRRYFKQQ Sbjct: 231 AKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQ 290 Query: 322 EINMFR 305 EI ++R Sbjct: 291 EIILWR 296
>VPS26_HUMAN (O75436) Vacuolar protein sorting 26 (Vesicle protein sorting 26)| (hVPS26) Length = 327 Score = 202 bits (513), Expect = 1e-51 Identities = 95/126 (75%), Positives = 115/126 (91%) Frame = -3 Query: 682 EDCLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETL 503 EDCLHIEFEY+KSKYHLKDVIVGKIYFLLVRIKI++MEL++ ++E TG GP+T ETET+ Sbjct: 171 EDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETI 230 Query: 502 AKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQ 323 AK+E+MDGAPV+GESIP+RLFL Y+ TPT R++N KFSV+Y+LNLVLVDEEDRRYFKQQ Sbjct: 231 AKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQ 290 Query: 322 EINMFR 305 EI ++R Sbjct: 291 EIILWR 296
>VPS26_CAEEL (O01258) Vacuolar protein sorting 26 homolog (VPS26 protein| homolog) Length = 356 Score = 200 bits (509), Expect = 3e-51 Identities = 94/126 (74%), Positives = 112/126 (88%) Frame = -3 Query: 682 EDCLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETL 503 EDCLHIEFEY+K+KYHL+DVIVGKIYFLLVRIKIK ME+ I + E GSGPNT+ E+ET+ Sbjct: 170 EDCLHIEFEYNKNKYHLQDVIVGKIYFLLVRIKIKYMEIAILKTEVVGSGPNTFKESETV 229 Query: 502 AKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQ 323 AKFE+MDGAPVRGESIP+RLFL Y+L P+ R++ KFSVKY+LNLVLVDEEDRRYFKQQ Sbjct: 230 AKFEIMDGAPVRGESIPIRLFLAGYDLAPSMRDVGKKFSVKYFLNLVLVDEEDRRYFKQQ 289 Query: 322 EINMFR 305 E+ ++R Sbjct: 290 EVTLWR 295
>VPS26_DROME (Q9W552) Vacuolar protein sorting 26 homolog (VPS26 protein| homolog) Length = 478 Score = 200 bits (508), Expect = 4e-51 Identities = 93/132 (70%), Positives = 115/132 (87%) Frame = -3 Query: 682 EDCLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETL 503 EDCLHIEFEY+KSKYHL+D I+GKIYFLLVRIKIK+ME+ I ++ESTG+GP + E ET+ Sbjct: 168 EDCLHIEFEYNKSKYHLRDTIIGKIYFLLVRIKIKHMEIAIIKKESTGTGPTMFNENETI 227 Query: 502 AKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQ 323 AK+E+MDGAPV+GESIP+R+FL Y LTPT R+IN KFSVKY+LNLVL+D EDRRYFKQQ Sbjct: 228 AKYEIMDGAPVKGESIPIRVFLAGYNLTPTMRDINKKFSVKYFLNLVLMDTEDRRYFKQQ 287 Query: 322 EINMFRLDEIPQ 287 EI ++R + P+ Sbjct: 288 EITLWRKADKPR 299
>VPS26_PLAF7 (Q8I4T1) Vacuolar protein sorting 26 homolog (VPS26 protein| homolog) Length = 297 Score = 192 bits (489), Expect = 6e-49 Identities = 88/126 (69%), Positives = 112/126 (88%) Frame = -3 Query: 682 EDCLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETL 503 EDCLHIEFEY KSKYHLKDV+VGK+YFLLVRIKIK+MEL+I + E++G G N ET TL Sbjct: 168 EDCLHIEFEYDKSKYHLKDVVVGKVYFLLVRIKIKHMELDIIKMETSGVGKNYTTETVTL 227 Query: 502 AKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQ 323 +KFE+MDG+P++ E IPVRL+L+ ++LTPTY+NI NKFSVKYY+NL++VDEE+RRYFK+Q Sbjct: 228 SKFEIMDGSPIKSECIPVRLYLSGFDLTPTYKNIQNKFSVKYYINLIIVDEEERRYFKKQ 287 Query: 322 EINMFR 305 EI ++R Sbjct: 288 EIFLWR 293
>VPS26_SCHPO (Q10243) Vacuolar protein sorting/targeting protein VPS26 homolog| Length = 298 Score = 184 bits (466), Expect = 3e-46 Identities = 81/126 (64%), Positives = 108/126 (85%) Frame = -3 Query: 682 EDCLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETL 503 ++CLHIEFEYSK+KYHLKDVI+GKIYF+LVRIK++ ME+ I RRE+ G+ PN Y +ET+ Sbjct: 167 DECLHIEFEYSKNKYHLKDVIIGKIYFILVRIKVQRMEVSIIRRETIGTSPNQYSNSETI 226 Query: 502 AKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQ 323 +F++MDG P RGE+IP+R+FL Y LTPT+R++N KFSV+YYL+L+LVDE+ RRYFKQ Sbjct: 227 TRFQIMDGNPNRGETIPLRMFLNGYALTPTFRDVNKKFSVRYYLSLILVDEDQRRYFKQS 286 Query: 322 EINMFR 305 EI ++R Sbjct: 287 EITLWR 292
>VPS26_YEAST (P40335) Vacuolar protein sorting/targeting protein VPS26| Length = 379 Score = 146 bits (369), Expect = 5e-35 Identities = 70/126 (55%), Positives = 98/126 (77%) Frame = -3 Query: 682 EDCLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETL 503 E+CLHIEFEY+KS+Y LK+VIVG+IYFLL R++IK+MEL + RES+G + + T Sbjct: 254 ENCLHIEFEYAKSQYSLKEVIVGRIYFLLTRLRIKHMELSLITRESSGLQTSNVMTDSTA 313 Query: 502 AKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQ 323 ++E+MDG+ V+GE+IP+RLFL+ Y+LTP N F+VK YL+LV++DE+ RRYFKQ Sbjct: 314 IRYEIMDGSSVKGETIPIRLFLSGYDLTPNMS--CNYFNVKNYLSLVIIDEDGRRYFKQS 371 Query: 322 EINMFR 305 EI ++R Sbjct: 372 EITLYR 377
>YHR5_YEAST (P38823) RING finger protein YHR115C| Length = 416 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = -1 Query: 306 ALTKFHSLHRLLLLGTWPESCVARVSNLASCYAVYNSPGEHAVQFQCTVRCLVTPFP 136 AL++ +L +L G E C ++ + C A++ SP H+ F C R ++ +P Sbjct: 308 ALSRIKNLQKLTT-GLEQEDCSICLNKIKPCQAIFISPCAHSWHFHCVRRLVIMNYP 363
>FINC_HUMAN (P02751) Fibronectin precursor (FN) (Cold-insoluble globulin) (CIG)| Length = 2386 Score = 31.6 bits (70), Expect = 2.4 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +2 Query: 56 SQXGRKMKMVKSPQSSISVIVSKPDCYGKGVTRQRTVHWNCT 181 S+ R+ + + PQS ++V SKP CY G Q W T Sbjct: 27 SKSKRQAQQMVQPQSPVAVSQSKPGCYDNGKHYQINQQWERT 68
>YNL6_YEAST (P53924) RING finger protein YNL116W| Length = 522 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = -1 Query: 306 ALTKFHSLHRLLLLGTWPESCVARVSNLASCYAVYNSPGEHAVQFQCTVRCLVTPFP 136 AL + +L +L G E C + + C A++ SP H+ F+C R ++ +P Sbjct: 414 ALQRLQNLQKLTT-GIEEEDCSICLCKIKPCQAIFISPCAHSWHFRCVRRLVMLSYP 469
>RP94_VARV (P33067) RNA polymerase-associated transcription-specificity factor| (RAP94) Length = 795 Score = 31.2 bits (69), Expect = 3.1 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 4/131 (3%) Frame = -3 Query: 676 CLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKN-MELEIRRRESTGS-GPNTYVE--TE 509 C HI SK KY+++ V + KI L + I IK+ ++++ E+TG N++ E Sbjct: 195 CRHIGIPISKKKYNVRYVFLYKIDGLSIPIIIKDFLDVKYVYLENTGKIYKNSFSEDHNN 254 Query: 508 TLAKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFK 329 +L+ + + ++ + +FL+ Y L YY +L+ DE + K Sbjct: 255 SLSDWGKVIIPLLKDRHLYSYIFLSSYHLH------------SYYTDLIAKDEP--VFIK 300 Query: 328 QQEINMFRLDE 296 ++++++ +DE Sbjct: 301 RKKLDIIEIDE 311
>RP94_VACCV (P68438) RNA-polymerase-associated transcription specificity factor| (RAP94) Length = 795 Score = 30.4 bits (67), Expect = 5.2 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 4/131 (3%) Frame = -3 Query: 676 CLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKN-MELEIRRRESTGS-GPNTYVE--TE 509 C HI SK KY+++ V + KI L + I IK+ ++++ E+TG N++ E Sbjct: 195 CRHIGIPISKKKYNVRYVFLYKIDGLSIPIIIKDFLDVKYVYLENTGKIYKNSFSEDHNN 254 Query: 508 TLAKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFK 329 +L+ + + ++ + +FL+ Y L YY +L+ DE + K Sbjct: 255 SLSDWGKVIIPLLKDRHLYSYIFLSSYHLH------------SYYTDLIARDEP--VFVK 300 Query: 328 QQEINMFRLDE 296 ++++++ +DE Sbjct: 301 RKKLDIIEIDE 311
>RP94_VACCC (P68439) RNA polymerase-associated transcription-specificity factor| (RAP94) Length = 795 Score = 30.4 bits (67), Expect = 5.2 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 4/131 (3%) Frame = -3 Query: 676 CLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKN-MELEIRRRESTGS-GPNTYVE--TE 509 C HI SK KY+++ V + KI L + I IK+ ++++ E+TG N++ E Sbjct: 195 CRHIGIPISKKKYNVRYVFLYKIDGLSIPIIIKDFLDVKYVYLENTGKIYKNSFSEDHNN 254 Query: 508 TLAKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFK 329 +L+ + + ++ + +FL+ Y L YY +L+ DE + K Sbjct: 255 SLSDWGKVIIPLLKDRHLYSYIFLSSYHLH------------SYYTDLIARDEP--VFVK 300 Query: 328 QQEINMFRLDE 296 ++++++ +DE Sbjct: 301 RKKLDIIEIDE 311
>RP94_VACCA (O57207) RNA polymerase-associated transcription-specificity factor| (RAP94) Length = 795 Score = 30.4 bits (67), Expect = 5.2 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 4/131 (3%) Frame = -3 Query: 676 CLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKN-MELEIRRRESTGS-GPNTYVE--TE 509 C HI SK KY+++ V + KI L + I IK+ ++++ E+TG N++ E Sbjct: 195 CRHIGIPISKKKYNVRYVFLYKIDGLSIPIIIKDFLDVKYVYLENTGKIYKNSFSEDHNN 254 Query: 508 TLAKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFSVKYYLNLVLVDEEDRRYFK 329 +L+ + + ++ + +FL+ Y L YY +L+ DE + K Sbjct: 255 SLSDWGKVIIPLLKDRHLYSYIFLSSYHLH------------SYYTDLIARDEP--VFVK 300 Query: 328 QQEINMFRLDE 296 ++++++ +DE Sbjct: 301 RKKLDIIEIDE 311
>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (Lectomedin-2) Length = 1474 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -2 Query: 476 PSQRRIYSSKAVLDSIRANPDLPQHKQQVQCQVLPQPGPCGRGRPEILQAAR 321 P + +Y+S A ++R +P P + + LP P P G PEI +R Sbjct: 1379 PGRDSLYASGA---NLRDSPSYPDSSPEGPSEALPPPPPAPPGPPEIYYTSR 1427
>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) Length = 1472 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -2 Query: 476 PSQRRIYSSKAVLDSIRANPDLPQHKQQVQCQVLPQPGPCGRGRPEILQAAR 321 P + +Y+S A ++R +P P + + LP P P G PEI +R Sbjct: 1377 PGRDSLYASGA---NLRDSPSYPDSSPEGPSEALPPPPPAPPGPPEIYYTSR 1425
>LEUD_WOLSU (Q7M887) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 167 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +3 Query: 156 SARYIGTALHALLESYIQHSRMPNC*LLQHTIQARFRAAGVYEGCGIS 299 +ARY+ T+ +L S++ P+ LQH + F AG GCG S Sbjct: 22 AARYLNTSDPQVLASHVMEDARPD--FLQHFTKGDFIVAGENFGCGSS 67
>FINC_MOUSE (P11276) Fibronectin precursor (FN)| Length = 2477 Score = 29.6 bits (65), Expect = 9.0 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +2 Query: 68 RKMKMVKSPQSSISVIVSKPDCYGKGVTRQRTVHWNCT 181 R+ + + PQS ++V SKP C+ G Q W T Sbjct: 32 RQAQQIVQPQSPVAVSQSKPGCFDNGKHYQINQQWERT 69
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 29.6 bits (65), Expect = 9.0 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = -3 Query: 586 KIKNMELEIRRRESTGSGPNTYVETETLAKFEL----MDGAPVRGESIPVRLFLTPYELT 419 KIK +++ + R S YVE E + E MDG + G+ I LTP+ + Sbjct: 163 KIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAVLTPWPMR 222 Query: 418 PTYRNIN 398 P R + Sbjct: 223 PMPRRFS 229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,207,529 Number of Sequences: 219361 Number of extensions: 1932260 Number of successful extensions: 5373 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5196 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5371 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
