Clone Name | rbasd13n08 |
---|---|
Clone Library Name | barley_pub |
>emb|Z68903.1|SCCPN60 S.cereale cv. Petkus "Halo" encoding cpn60 Length = 1707 Score = 854 bits (431), Expect = 0.0 Identities = 518/542 (95%), Gaps = 5/542 (0%) Strand = Plus / Minus Query: 158 atctctcaaaacttggttcatgctaccaaaaattaaaccacatcctctggagagactcca 217 ||||||||||||||||| ||||||||||||| ||||||||| || || ||||| |||| Sbjct: 1571 atctctcaaaacttggtccatgctaccaaaa-ttaaaccacgtcatccggagaaactcgg 1513 Query: 218 cc--gtcgctcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcggg 275 || ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1512 ccatgtcactcatcagtatccgaagccggagttgtccatggggttggcgaggggcgcggc 1453 Query: 276 ctcaggctccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccga 335 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1452 ctcaggctccttgatctcgacgaccaccacgtcggacgtcaggaaggtcttggccaccga 1393 Query: 336 cgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 395 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1392 tgcggcgtgctccaggcaacatctcaccaccttggtggggtcgatgataccagcagccat 1333 Query: 396 caagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaag 455 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1332 caagtcctcgtactgcccagtggcagcgttgtagccgaacttgaagttgtcgttagaaag 1273 Query: 456 aaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaactttgagtg 515 ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct: 1272 aaccttctcggtaacaacactgccattgacaccggcattcttggcgatcaac-ttgagtg 1214 Query: 516 ggtagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgttctccaggg 575 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1213 ggtagcacagtgccctcctcactatctcagctccgaccttctgctcgtcgttctccaggg 1154 Query: 576 tgtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaa 635 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1153 tgtccttgatggcatcaaccttagcagccagcctcaaaagggtgcaccctccaccaacaa 1094 Query: 636 caataccttcctcaacggcagccttggtttgcgtttagagcatcctcaactcgcaacttc 695 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct: 1093 caataccttcctcaacggcagccttgg-ttgcgtttagagcatcctcaactctcaacttc 1035 Query: 696 tt 697 || Sbjct: 1034 tt 1033 Score = 165 bits (83), Expect = 2e-37 Identities = 98/102 (96%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 23 gtaaaacgagngccgtaagctgttccaattacatcaagaaatttccgctaaatgtttctc 82 ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1707 gtaaaacaagagccgtatgctgttccaattacatcaagaaatttccgctaaatgtttctc 1648 Query: 83 tgcttatttcgccgttctggcaggcacatcacattgcatttt 124 ||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1647 tgcttatttcgccgttctggc-ggcacatcacattgcatttt 1607
>ref|NM_185419.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2131 Score = 486 bits (245), Expect = e-134 Identities = 418/473 (88%), Gaps = 2/473 (0%) Strand = Plus / Minus Query: 225 tcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggctc 284 ||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||||| Sbjct: 1898 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 1839 Query: 285 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 344 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 1838 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 1779 Query: 345 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 404 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 1778 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 1719 Query: 405 gtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttctc 464 |||||| ||||| || || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 1718 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 1659 Query: 465 ggtaacaacactgccattgacaccagcattcttggcgatcaactttgagtgggtagcaca 524 ||||||||| || ||||| |||||||||||||| || ||||| ||| || ||||||| || Sbjct: 1658 ggtaacaacgcttccattaacaccagcattcttagcaatcaa-tttaagcgggtagctca 1600 Query: 525 gcgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttga 584 |||| ||||| || || |||||||| ||||||||||| || ||||||||| ||||||||| Sbjct: 1599 gcgctctccttacaatttcagctccaaccttctgctcatcattctccaggttgtccttga 1540 Query: 585 tggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaatacctt 644 |||| ||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 1539 tggcgtcaactctagctgccagtctcagaagagtgcaccctccaccaacaacaatacctt 1480 Query: 645 cctcaacggcagccttggtttgcgtttagagcatcctcaactcgcaacttctt 697 ||||||| |||||||||| | || ||||| ||||||||||||| ||||||||| Sbjct: 1479 cctcaacagcagccttgg-tagcatttagggcatcctcaactctcaacttctt 1428
>dbj|AK101334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034I03, full insert sequence Length = 2131 Score = 486 bits (245), Expect = e-134 Identities = 418/473 (88%), Gaps = 2/473 (0%) Strand = Plus / Minus Query: 225 tcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggctc 284 ||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||||| Sbjct: 1898 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 1839 Query: 285 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 344 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 1838 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 1779 Query: 345 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 404 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 1778 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 1719 Query: 405 gtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttctc 464 |||||| ||||| || || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 1718 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 1659 Query: 465 ggtaacaacactgccattgacaccagcattcttggcgatcaactttgagtgggtagcaca 524 ||||||||| || ||||| |||||||||||||| || ||||| ||| || ||||||| || Sbjct: 1658 ggtaacaacgcttccattaacaccagcattcttagcaatcaa-tttaagcgggtagctca 1600 Query: 525 gcgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttga 584 |||| ||||| || || |||||||| ||||||||||| || ||||||||| ||||||||| Sbjct: 1599 gcgctctccttacaatttcagctccaaccttctgctcatcattctccaggttgtccttga 1540 Query: 585 tggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaatacctt 644 |||| ||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 1539 tggcgtcaactctagctgccagtctcagaagagtgcaccctccaccaacaacaatacctt 1480 Query: 645 cctcaacggcagccttggtttgcgtttagagcatcctcaactcgcaacttctt 697 ||||||| |||||||||| | || ||||| ||||||||||||| ||||||||| Sbjct: 1479 cctcaacagcagccttgg-tagcatttagggcatcctcaactctcaacttctt 1428
>dbj|AK062098.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-A02, full insert sequence Length = 1781 Score = 486 bits (245), Expect = e-134 Identities = 418/473 (88%), Gaps = 2/473 (0%) Strand = Plus / Minus Query: 225 tcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggctc 284 ||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||||| Sbjct: 1566 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 1507 Query: 285 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 344 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 1506 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 1447 Query: 345 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 404 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 1446 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 1387 Query: 405 gtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttctc 464 |||||| ||||| || || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 1386 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 1327 Query: 465 ggtaacaacactgccattgacaccagcattcttggcgatcaactttgagtgggtagcaca 524 ||||||||| || ||||| |||||||||||||| || ||||| ||| || ||||||| || Sbjct: 1326 ggtaacaacgcttccattaacaccagcattcttagcaatcaa-tttaagcgggtagctca 1268 Query: 525 gcgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttga 584 |||| ||||| || || |||||||| ||||||||||| || ||||||||| ||||||||| Sbjct: 1267 gcgctctccttacaatttcagctccaaccttctgctcatcattctccaggttgtccttga 1208 Query: 585 tggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaatacctt 644 |||| ||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 1207 tggcgtcaactctagctgccagtctcagaagagtgcaccctccaccaacaacaatacctt 1148 Query: 645 cctcaacggcagccttggtttgcgtttagagcatcctcaactcgcaacttctt 697 ||||||| |||||||||| | || ||||| ||||||||||||| ||||||||| Sbjct: 1147 cctcaacagcagccttgg-tagcatttagggcatcctcaactctcaacttctt 1096
>dbj|AK060117.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E09, full insert sequence Length = 1097 Score = 486 bits (245), Expect = e-134 Identities = 418/473 (88%), Gaps = 2/473 (0%) Strand = Plus / Minus Query: 225 tcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggctc 284 ||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||||| Sbjct: 892 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 833 Query: 285 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 344 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 832 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 773 Query: 345 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 404 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 772 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 713 Query: 405 gtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttctc 464 |||||| ||||| || || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 712 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 653 Query: 465 ggtaacaacactgccattgacaccagcattcttggcgatcaactttgagtgggtagcaca 524 ||||||||| || ||||| |||||||||||||| || ||||| ||| || ||||||| || Sbjct: 652 ggtaacaacgcttccattaacaccagcattcttagcaatcaa-tttaagcgggtagctca 594 Query: 525 gcgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttga 584 |||| ||||| || || |||||||| ||||||||||| || ||||||||| ||||||||| Sbjct: 593 gcgctctccttacaatttcagctccaaccttctgctcatcattctccaggttgtccttga 534 Query: 585 tggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaatacctt 644 |||| ||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 533 tggcgtcaactctagctgccagtctcagaagagtgcaccctccaccaacaacaatacctt 474 Query: 645 cctcaacggcagccttggtttgcgtttagagcatcctcaactcgcaacttctt 697 ||||||| |||||||||| | || ||||| ||||||||||||| ||||||||| Sbjct: 473 cctcaacagcagccttgg-tagcatttagggcatcctcaactctcaacttctt 422
>gb|AY675582.1| Zea mays RuBisCo subunit binding-protein beta subunit mRNA, partial cds Length = 1471 Score = 440 bits (222), Expect = e-120 Identities = 413/474 (87%), Gaps = 2/474 (0%) Strand = Plus / Minus Query: 224 ctcatcagtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggct 283 ||||||||||||| |||| ||||||||||| ||||| ||| || | | ||| |||| Sbjct: 1235 ctcatcagtatccatagccagagttgtccatcgggtttgcgacaggtgtagcctccggct 1176 Query: 284 ccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcat 343 ||||||| ||||||||||| || || || ||||||||||||||||||||||||||||| | Sbjct: 1175 ccttgatatcgacgaccacaacatctgatgtcaggaaggtcttggccaccgacgcggcgt 1116 Query: 344 gctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcct 403 |||||| ||| |||||||||||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 1115 gctccaagcagcatctcaccaccttggtggggtcaatgataccagcagccatcaggtcct 1056 Query: 404 cgtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttct 463 ||||||| ||||| || || ||||| || |||||||||| || |||||||| ||||||| Sbjct: 1055 cgtactgtccagtagcagcattgtaaccatacttgaagttatcattagaaaggaccttct 996 Query: 464 cggtaacaacactgccattgacaccagcattcttggcgatcaactttgagtgggtagcac 523 | || |||||||||||||||||||| || || || || ||||| ||| |||||||||| | Sbjct: 995 cagtgacaacactgccattgacaccggcgtttttagcaatcaa-tttaagtgggtagctc 937 Query: 524 agcgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttg 583 || |||||||||||||| |||||||| ||||||||||||||||||||||| || |||||| Sbjct: 936 agggccctcctcactatttcagctccaaccttctgctcgtcgttctccagtgtatccttg 877 Query: 584 atggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaatacct 643 ||||| || || ||||| || |||| |||||||||||||||||| ||||||||||||||| Sbjct: 876 atggcgtcgactttagctgcaagccgcaaaagagtgcaccctcccccaacaacaatacct 817 Query: 644 tcctcaacggcagccttggtttgcgtttagagcatcctcaactcgcaacttctt 697 ||||||||||||||||||| |||| ||||| ||||||||||||| |||||||| Sbjct: 816 tcctcaacggcagccttgg-ttgcatttagggcatcctcaactcttaacttctt 764
>gb|AY103778.1| Zea mays PCO063180 mRNA sequence Length = 2338 Score = 420 bits (212), Expect = e-114 Identities = 406/468 (86%), Gaps = 2/468 (0%) Strand = Plus / Minus Query: 230 agtatccgaagccggagttgtccatggggttgacgaggggcgcgggctcaggctccttga 289 ||||||| |||| ||||||||||| ||||| | |||||||| | ||| |||||||| | Sbjct: 2034 agtatccatagccagagttgtccatcgggttagcaaggggcgcagactctggctccttaa 1975 Query: 290 tctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctcca 349 | ||||||||||| || || || ||||||||||||||||||||||||||||||||||||| Sbjct: 1974 tatcgacgaccacaacatcagatgtcaggaaggtcttggccaccgacgcggcatgctcca 1915 Query: 350 ggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctcgtact 409 || ||||||||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct: 1914 aacagcatctcaccaccttagtaggatcaatgataccagcagccatcaagtcctcgtact 1855 Query: 410 gcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaa 469 | ||||| || || ||||| || |||||||||| ||||||||||| |||||||| || | Sbjct: 1854 gtccagtagcagcattgtaaccatacttgaagttatcgttagaaaggaccttctcagtga 1795 Query: 470 caacactgccattgacaccagcattcttggcgatcaactttgagtgggtagcacagcgcc 529 | || |||||||||||||| ||||| || || ||||| ||| |||||||||| ||| ||| Sbjct: 1794 cgacgctgccattgacaccggcatttttagcaatcaa-tttaagtgggtagctcagggcc 1736 Query: 530 ctcctcactatctcagctccgaccttctgctcgtcgttctccagggtgtccttgatggca 589 ||||| ||||| |||||||| ||||||||||| ||||||||||| || |||||||||||| Sbjct: 1735 ctccttactatttcagctccaaccttctgctcatcgttctccagtgtatccttgatggca 1676 Query: 590 tcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaataccttcctca 649 || || ||||| || |||| |||||| ||||| ||||||||||||||||||||||||||| Sbjct: 1675 tcgactttagctgcaagccgcaaaagggtgcatcctccaccaacaacaataccttcctca 1616 Query: 650 acggcagccttggtttgcgtttagagcatcctcaactcgcaacttctt 697 || |||||||||| |||| ||||| ||||||||||||| |||||||| Sbjct: 1615 acagcagccttgg-ttgcatttagggcatcctcaactcttaacttctt 1569
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 141 bits (71), Expect = 4e-30 Identities = 113/127 (88%) Strand = Plus / Plus Query: 241 ccggagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgacc 300 |||||||||||||| |||||| || |||||| |||||||||||||||||||||||||| Sbjct: 810397 ccggagttgtccatcgggttggtgacgggcgcaggctcaggctccttgatctcgacgacg 810456 Query: 301 accacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctc 360 || || ||||| || ||||| ||||||||||||||||| |||||||| || ||||||||| Sbjct: 810457 acgacatccgatgtgaggaatgtcttggccaccgacgcagcatgctcaagacaacatctc 810516 Query: 361 accacct 367 ||||||| Sbjct: 810517 accacct 810523 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 551 accttctgctcgtcgttctccagggtgtccttgatggcatcaaccttagcagccagcctc 610 ||||||||||| || ||||||||| ||||||||||||| ||||| |||| ||||| ||| Sbjct: 811408 accttctgctcatcattctccaggttgtccttgatggcgtcaactctagctgccagtctc 811467 Query: 611 aaaagagtgcaccctccaccaacaacaataccttcctcaacggcagcct 659 | ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 811468 agaagagtgcaccctccaccaacaacaataccttcctcaacagcagcct 811516 Score = 113 bits (57), Expect = 8e-22 Identities = 87/97 (89%) Strand = Plus / Plus Query: 364 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 423 |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || Sbjct: 810972 accttagtggggtcaatgataccagcagccatcaaatcctcgtactgtccagttgcagca 811031 Query: 424 ttgtagccgaacttgaagttgtcgttagaaagaacct 460 ||||| || ||||||||||| |||||||| ||||||| Sbjct: 811032 ttgtaaccaaacttgaagttatcgttagagagaacct 811068 Score = 77.8 bits (39), Expect = 4e-11 Identities = 85/99 (85%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 456 aaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaactttgagtg 515 |||||||||||||||||| || ||||| |||||||||||||| || ||||| ||| || | Sbjct: 811141 aaccttctcggtaacaacgcttccattaacaccagcattcttagcaatcaa-tttaagcg 811199 Query: 516 ggtagcacagcgccctcctcactatctcagctccgacct 554 |||||| |||||| ||||| || || |||||||| |||| Sbjct: 811200 ggtagctcagcgctctccttacaatttcagctccaacct 811238 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 669 tttagagcatcctcaactcgcaacttctt 697 ||||| ||||||||||||| ||||||||| Sbjct: 811671 tttagggcatcctcaactctcaacttctt 811699 Score = 40.1 bits (20), Expect = 9.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 366 cttagtggggtcgatgataccagcagccatcaagtcctcgtact 409 |||||||||||| || | |||||| |||| ||||||||||||| Sbjct: 806511 cttagtggggtcaatagtcccagcaaccattaagtcctcgtact 806554
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541H01 Length = 157519 Score = 141 bits (71), Expect = 4e-30 Identities = 113/127 (88%) Strand = Plus / Plus Query: 241 ccggagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgacc 300 |||||||||||||| |||||| || |||||| |||||||||||||||||||||||||| Sbjct: 93531 ccggagttgtccatcgggttggtgacgggcgcaggctcaggctccttgatctcgacgacg 93590 Query: 301 accacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctc 360 || || ||||| || ||||| ||||||||||||||||| |||||||| || ||||||||| Sbjct: 93591 acgacatccgatgtgaggaatgtcttggccaccgacgcagcatgctcaagacaacatctc 93650 Query: 361 accacct 367 ||||||| Sbjct: 93651 accacct 93657 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 551 accttctgctcgtcgttctccagggtgtccttgatggcatcaaccttagcagccagcctc 610 ||||||||||| || ||||||||| ||||||||||||| ||||| |||| ||||| ||| Sbjct: 94542 accttctgctcatcattctccaggttgtccttgatggcgtcaactctagctgccagtctc 94601 Query: 611 aaaagagtgcaccctccaccaacaacaataccttcctcaacggcagcct 659 | ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 94602 agaagagtgcaccctccaccaacaacaataccttcctcaacagcagcct 94650 Score = 113 bits (57), Expect = 8e-22 Identities = 87/97 (89%) Strand = Plus / Plus Query: 364 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 423 |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || Sbjct: 94106 accttagtggggtcaatgataccagcagccatcaaatcctcgtactgtccagttgcagca 94165 Query: 424 ttgtagccgaacttgaagttgtcgttagaaagaacct 460 ||||| || ||||||||||| |||||||| ||||||| Sbjct: 94166 ttgtaaccaaacttgaagttatcgttagagagaacct 94202 Score = 77.8 bits (39), Expect = 4e-11 Identities = 85/99 (85%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 456 aaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaactttgagtg 515 |||||||||||||||||| || ||||| |||||||||||||| || ||||| ||| || | Sbjct: 94275 aaccttctcggtaacaacgcttccattaacaccagcattcttagcaatcaa-tttaagcg 94333 Query: 516 ggtagcacagcgccctcctcactatctcagctccgacct 554 |||||| |||||| ||||| || || |||||||| |||| Sbjct: 94334 ggtagctcagcgctctccttacaatttcagctccaacct 94372 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 669 tttagagcatcctcaactcgcaacttctt 697 ||||| ||||||||||||| ||||||||| Sbjct: 94805 tttagggcatcctcaactctcaacttctt 94833 Score = 40.1 bits (20), Expect = 9.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 366 cttagtggggtcgatgataccagcagccatcaagtcctcgtact 409 |||||||||||| || | |||||| |||| ||||||||||||| Sbjct: 89645 cttagtggggtcaatagtcccagcaaccattaagtcctcgtact 89688
>ref|XM_463795.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2155 Score = 137 bits (69), Expect = 5e-29 Identities = 271/337 (80%), Gaps = 1/337 (0%) Strand = Plus / Minus Query: 328 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 387 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1789 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1730 Query: 388 gcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcg 447 ||||||||||| ||||| || | || || || || ||||| || || ||||||| || Sbjct: 1729 gcagccatcaaatcctcatattttcctgtagcggcattgtaaccatacctgaagttatca 1670 Query: 448 ttagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaac 507 || | ||| |||||||| |||||||||||||| || ||||||||||| || || || || Sbjct: 1669 ttggcaaggaccttctcagtaacaacactgccgttaacaccagcattttttgctattaa- 1611 Query: 508 tttgagtgggtagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgtt 567 ||| |||||||| | || | | |||| || || ||||| || |||||||| || || || Sbjct: 1610 tttaagtgggtaactcaaggacttccttacgatttcagccccaaccttctgttcatcatt 1551 Query: 568 ctccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctcc 627 ||| || || || | ||||||||||| || | || |||| |||||| || || || || Sbjct: 1550 ctcaagtgtttctataatggcatcaacttttgatgcaagccgcaaaagcgtacagccacc 1491 Query: 628 accaacaacaataccttcctcaacggcagccttggtt 664 ||||||||||||||||||||||| || ||||||||| Sbjct: 1490 tccaacaacaataccttcctcaacagccgccttggtt 1454
>ref|XM_506674.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1435_F07.26 mRNA Length = 2310 Score = 137 bits (69), Expect = 5e-29 Identities = 271/337 (80%), Gaps = 1/337 (0%) Strand = Plus / Minus Query: 328 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 387 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1809 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1750 Query: 388 gcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcg 447 ||||||||||| ||||| || | || || || || ||||| || || ||||||| || Sbjct: 1749 gcagccatcaaatcctcatattttcctgtagcggcattgtaaccatacctgaagttatca 1690 Query: 448 ttagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaac 507 || | ||| |||||||| |||||||||||||| || ||||||||||| || || || || Sbjct: 1689 ttggcaaggaccttctcagtaacaacactgccgttaacaccagcattttttgctattaa- 1631 Query: 508 tttgagtgggtagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgtt 567 ||| |||||||| | || | | |||| || || ||||| || |||||||| || || || Sbjct: 1630 tttaagtgggtaactcaaggacttccttacgatttcagccccaaccttctgttcatcatt 1571 Query: 568 ctccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctcc 627 ||| || || || | ||||||||||| || | || |||| |||||| || || || || Sbjct: 1570 ctcaagtgtttctataatggcatcaacttttgatgcaagccgcaaaagcgtacagccacc 1511 Query: 628 accaacaacaataccttcctcaacggcagccttggtt 664 ||||||||||||||||||||||| || ||||||||| Sbjct: 1510 tccaacaacaataccttcctcaacagccgccttggtt 1474
>dbj|AK101537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048E22, full insert sequence Length = 2154 Score = 137 bits (69), Expect = 5e-29 Identities = 271/337 (80%), Gaps = 1/337 (0%) Strand = Plus / Minus Query: 328 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 387 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1788 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1729 Query: 388 gcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcg 447 ||||||||||| ||||| || | || || || || ||||| || || ||||||| || Sbjct: 1728 gcagccatcaaatcctcatattttcctgtagcggcattgtaaccatacctgaagttatca 1669 Query: 448 ttagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaac 507 || | ||| |||||||| |||||||||||||| || ||||||||||| || || || || Sbjct: 1668 ttggcaaggaccttctcagtaacaacactgccgttaacaccagcattttttgctattaa- 1610 Query: 508 tttgagtgggtagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgtt 567 ||| |||||||| | || | | |||| || || ||||| || |||||||| || || || Sbjct: 1609 tttaagtgggtaactcaaggacttccttacgatttcagccccaaccttctgttcatcatt 1550 Query: 568 ctccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctcc 627 ||| || || || | ||||||||||| || | || |||| |||||| || || || || Sbjct: 1549 ctcaagtgtttctataatggcatcaacttttgatgcaagccgcaaaagcgtacagccacc 1490 Query: 628 accaacaacaataccttcctcaacggcagccttggtt 664 ||||||||||||||||||||||| || ||||||||| Sbjct: 1489 tccaacaacaataccttcctcaacagccgccttggtt 1453
>dbj|AK070603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059D06, full insert sequence Length = 2310 Score = 137 bits (69), Expect = 5e-29 Identities = 271/337 (80%), Gaps = 1/337 (0%) Strand = Plus / Minus Query: 328 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 387 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1809 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1750 Query: 388 gcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcg 447 ||||||||||| ||||| || | || || || || ||||| || || ||||||| || Sbjct: 1749 gcagccatcaaatcctcatattttcctgtagcggcattgtaaccatacctgaagttatca 1690 Query: 448 ttagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaac 507 || | ||| |||||||| |||||||||||||| || ||||||||||| || || || || Sbjct: 1689 ttggcaaggaccttctcagtaacaacactgccgttaacaccagcattttttgctattaa- 1631 Query: 508 tttgagtgggtagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgtt 567 ||| |||||||| | || | | |||| || || ||||| || |||||||| || || || Sbjct: 1630 tttaagtgggtaactcaaggacttccttacgatttcagccccaaccttctgttcatcatt 1571 Query: 568 ctccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctcc 627 ||| || || || | ||||||||||| || | || |||| |||||| || || || || Sbjct: 1570 ctcaagtgtttctataatggcatcaacttttgatgcaagccgcaaaagcgtacagccacc 1511 Query: 628 accaacaacaataccttcctcaacggcagccttggtt 664 ||||||||||||||||||||||| || ||||||||| Sbjct: 1510 tccaacaacaataccttcctcaacagccgccttggtt 1474
>ref|NM_179480.1| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding AT1G55490 (CPN60B) transcript variant AT1G55490.2 mRNA, complete cds Length = 2060 Score = 135 bits (68), Expect = 2e-28 Identities = 212/260 (81%) Strand = Plus / Minus Query: 244 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 303 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 1890 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1831 Query: 304 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 363 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1830 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1771 Query: 364 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 423 ||||| || || |||||||| || ||||||||||| |||||||||| || || || || Sbjct: 1770 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1711 Query: 424 ttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaacaacactgccattg 483 ||||| ||||| || | ||| ||||| ||||| ||||||||| |||| ||||| ||||| Sbjct: 1710 ttgtaaccgaatttcacgttatcgttggaaagcaccttctcgctaactacacttccatta 1651 Query: 484 acaccagcattcttggcgat 503 |||||||||||||||||||| Sbjct: 1650 acaccagcattcttggcgat 1631 Score = 71.9 bits (36), Expect = 3e-09 Identities = 73/84 (86%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctcaacggcagccttggtttgcgtttag 673 |||||||| || ||||||||||||||||||||||| || || ||||| | |||| || || Sbjct: 1521 agagtgcaaccaccaccaacaacaataccttcctcgacagcggcctttg-ttgcattaag 1463 Query: 674 agcatcctcaactcgcaacttctt 697 |||||| ||||||| ||||||||| Sbjct: 1462 agcatcttcaactctcaacttctt 1439
>ref|NM_104424.2| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding AT1G55490 (CPN60B) transcript variant AT1G55490.1 mRNA, complete cds Length = 2087 Score = 135 bits (68), Expect = 2e-28 Identities = 212/260 (81%) Strand = Plus / Minus Query: 244 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 303 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 1917 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1858 Query: 304 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 363 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1857 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1798 Query: 364 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 423 ||||| || || |||||||| || ||||||||||| |||||||||| || || || || Sbjct: 1797 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1738 Query: 424 ttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaacaacactgccattg 483 ||||| ||||| || | ||| ||||| ||||| ||||||||| |||| ||||| ||||| Sbjct: 1737 ttgtaaccgaatttcacgttatcgttggaaagcaccttctcgctaactacacttccatta 1678 Query: 484 acaccagcattcttggcgat 503 |||||||||||||||||||| Sbjct: 1677 acaccagcattcttggcgat 1658 Score = 71.9 bits (36), Expect = 3e-09 Identities = 73/84 (86%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctcaacggcagccttggtttgcgtttag 673 |||||||| || ||||||||||||||||||||||| || || ||||| | |||| || || Sbjct: 1548 agagtgcaaccaccaccaacaacaataccttcctcgacagcggcctttg-ttgcattaag 1490 Query: 674 agcatcctcaactcgcaacttctt 697 |||||| ||||||| ||||||||| Sbjct: 1489 agcatcttcaactctcaacttctt 1466
>gb|AY081501.1| Arabidopsis thaliana Rubisco subunit binding-protein beta subunit (At1g55490) mRNA, complete cds Length = 1844 Score = 135 bits (68), Expect = 2e-28 Identities = 212/260 (81%) Strand = Plus / Minus Query: 244 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 303 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 1787 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1728 Query: 304 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 363 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1727 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1668 Query: 364 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 423 ||||| || || |||||||| || ||||||||||| |||||||||| || || || || Sbjct: 1667 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1608 Query: 424 ttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaacaacactgccattg 483 ||||| ||||| || | ||| ||||| ||||| ||||||||| |||| ||||| ||||| Sbjct: 1607 ttgtaaccgaatttcacgttatcgttggaaagcaccttctcgctaactacacttccatta 1548 Query: 484 acaccagcattcttggcgat 503 |||||||||||||||||||| Sbjct: 1547 acaccagcattcttggcgat 1528 Score = 71.9 bits (36), Expect = 3e-09 Identities = 73/84 (86%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctcaacggcagccttggtttgcgtttag 673 |||||||| || ||||||||||||||||||||||| || || ||||| | |||| || || Sbjct: 1418 agagtgcaaccaccaccaacaacaataccttcctcgacagcggcctttg-ttgcattaag 1360 Query: 674 agcatcctcaactcgcaacttctt 697 |||||| ||||||| ||||||||| Sbjct: 1359 agcatcttcaactctcaacttctt 1336
>gb|AF386945.1|AF386945 Arabidopsis thaliana Rubisco subunit binding-protein beta subunit (T5A14.11) mRNA, complete cds Length = 2060 Score = 135 bits (68), Expect = 2e-28 Identities = 212/260 (81%) Strand = Plus / Minus Query: 244 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 303 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 1909 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1850 Query: 304 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 363 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1849 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1790 Query: 364 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 423 ||||| || || |||||||| || ||||||||||| |||||||||| || || || || Sbjct: 1789 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1730 Query: 424 ttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaacaacactgccattg 483 ||||| ||||| || | ||| ||||| ||||| ||||||||| |||| ||||| ||||| Sbjct: 1729 ttgtaaccgaatttcacgttatcgttggaaagcaccttctcgctaactacacttccatta 1670 Query: 484 acaccagcattcttggcgat 503 |||||||||||||||||||| Sbjct: 1669 acaccagcattcttggcgat 1650 Score = 71.9 bits (36), Expect = 3e-09 Identities = 73/84 (86%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctcaacggcagccttggtttgcgtttag 673 |||||||| || ||||||||||||||||||||||| || || ||||| | |||| || || Sbjct: 1540 agagtgcaaccaccaccaacaacaataccttcctcgacagcggcctttg-ttgcattaag 1482 Query: 674 agcatcctcaactcgcaacttctt 697 |||||| ||||||| ||||||||| Sbjct: 1481 agcatcttcaactctcaacttctt 1458
>gb|BT018779.1| Zea mays clone EL01N0526C09.d mRNA sequence Length = 2155 Score = 133 bits (67), Expect = 9e-28 Identities = 266/331 (80%), Gaps = 1/331 (0%) Strand = Plus / Minus Query: 318 gaaggtcttggccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtc 377 |||||| || |||||||| || |||||||||| ||| || ||||| ||||| ||||| || Sbjct: 1792 gaaggttttcgccaccgatgcagcatgctccaagcagcacctcacaaccttggtgggatc 1733 Query: 378 gatgataccagcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaactt 437 |||||||||||||||||||||||||| |||| ||| || || || ||||| || || | Sbjct: 1732 aatgataccagcagccatcaagtcctcatactcccctgtagccgcattgtacccatacct 1673 Query: 438 gaagttgtcgttagaaagaaccttctcggtaacaacactgccattgacaccagcattctt 497 |||||| || || | |||||||||||| ||||| ||||||||||| || || ||||| || Sbjct: 1672 gaagttctcattggcaagaaccttctcagtaaccacactgccattaacgcctgcattttt 1613 Query: 498 ggcgatcaactttgagtgggtagcacagcgccctcctcactatctcagctccgaccttct 557 || ||||| ||| ||||| |||| || | | |||| || || ||||| || ||||||| Sbjct: 1612 tgcaatcaa-tttaagtggatagctcaaggacttccttacaatttcagccccaaccttct 1554 Query: 558 gctcgtcgttctccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagag 617 | || |||||||| ||||| || | || |||||||| || | || ||||||||||| | Sbjct: 1553 gttcatcgttctcaagggtctctataattgcatcaacttttgatgcaagcctcaaaaggg 1494 Query: 618 tgcaccctccaccaacaacaataccttcctc 648 | || || ||||| ||||| ||||||||||| Sbjct: 1493 tacagccaccacctacaacgataccttcctc 1463
>gb|BT018139.1| Zea mays clone EL01N0554H01.c mRNA sequence Length = 975 Score = 133 bits (67), Expect = 9e-28 Identities = 266/331 (80%), Gaps = 1/331 (0%) Strand = Plus / Minus Query: 318 gaaggtcttggccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtc 377 |||||| || |||||||| || |||||||||| ||| || ||||| ||||| ||||| || Sbjct: 587 gaaggttttcgccaccgatgcagcatgctccaagcagcacctcacaaccttggtgggatc 528 Query: 378 gatgataccagcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaactt 437 |||||||||||||||||||||||||| |||| ||| || || || ||||| || || | Sbjct: 527 aatgataccagcagccatcaagtcctcatactcccctgtagccgcattgtacccatacct 468 Query: 438 gaagttgtcgttagaaagaaccttctcggtaacaacactgccattgacaccagcattctt 497 |||||| || || | |||||||||||| ||||| ||||||||||| || || ||||| || Sbjct: 467 gaagttctcattggcaagaaccttctcagtaaccacactgccattaacgcctgcattttt 408 Query: 498 ggcgatcaactttgagtgggtagcacagcgccctcctcactatctcagctccgaccttct 557 || ||||| ||| ||||| |||| || | | |||| || || ||||| || ||||||| Sbjct: 407 tgcaatcaa-tttaagtggatagctcaaggacttccttacaatttcagccccaaccttct 349 Query: 558 gctcgtcgttctccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagag 617 | || |||||||| ||||| || | || |||||||| || | || ||||||||||| | Sbjct: 348 gttcatcgttctcaagggtctctataattgcatcaacttttgatgcaagcctcaaaaggg 289 Query: 618 tgcaccctccaccaacaacaataccttcctc 648 | || || ||||| ||||| ||||||||||| Sbjct: 288 tacagccaccacctacaacgataccttcctc 258
>gb|AY104969.1| Zea mays PCO070942 mRNA sequence Length = 2290 Score = 133 bits (67), Expect = 9e-28 Identities = 266/331 (80%), Gaps = 1/331 (0%) Strand = Plus / Minus Query: 318 gaaggtcttggccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtc 377 |||||| || |||||||| || |||||||||| ||| || ||||| ||||| ||||| || Sbjct: 1920 gaaggttttcgccaccgatgcagcatgctccaagcagcacctcacaaccttggtgggatc 1861 Query: 378 gatgataccagcagccatcaagtcctcgtactgcccagtggctgcgttgtagccgaactt 437 |||||||||||||||||||||||||| |||| ||| || || || ||||| || || | Sbjct: 1860 aatgataccagcagccatcaagtcctcatactcccctgtagccgcattgtacccatacct 1801 Query: 438 gaagttgtcgttagaaagaaccttctcggtaacaacactgccattgacaccagcattctt 497 |||||| || || | |||||||||||| ||||| ||||||||||| || || ||||| || Sbjct: 1800 gaagttctcattggcaagaaccttctcagtaaccacactgccattaacgcctgcattttt 1741 Query: 498 ggcgatcaactttgagtgggtagcacagcgccctcctcactatctcagctccgaccttct 557 || ||||| ||| ||||| |||| || | | |||| || || ||||| || ||||||| Sbjct: 1740 tgcaatcaa-tttaagtggatagctcaaggacttccttacaatttcagccccaaccttct 1682 Query: 558 gctcgtcgttctccagggtgtccttgatggcatcaaccttagcagccagcctcaaaagag 617 | || |||||||| ||||| || | || |||||||| || | || ||||||||||| | Sbjct: 1681 gttcatcgttctcaagggtctctataattgcatcaacttttgatgcaagcctcaaaaggg 1622 Query: 618 tgcaccctccaccaacaacaataccttcctc 648 | || || ||||| ||||| ||||||||||| Sbjct: 1621 tacagccaccacctacaacgataccttcctc 1591
>emb|BX814891.1|CNS0ADZ4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZG05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2000 Score = 127 bits (64), Expect = 5e-26 Identities = 212/260 (81%), Gaps = 1/260 (0%) Strand = Plus / Minus Query: 244 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 303 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 1871 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1812 Query: 304 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 363 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1811 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1752 Query: 364 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcg 423 ||||| || || |||||||| || ||||||||||| |||||||||| || || || || Sbjct: 1751 acctttgttggatcgatgattcctgcagccatcaa-tcctcgtacttgccggttgcagca 1693 Query: 424 ttgtagccgaacttgaagttgtcgttagaaagaaccttctcggtaacaacactgccattg 483 ||||| ||||| || | ||| ||||| ||||| ||||||||| |||| ||||| ||||| Sbjct: 1692 ttgtaaccgaatttcacgttatcgttggaaagcaccttctcgctaactacacttccatta 1633 Query: 484 acaccagcattcttggcgat 503 |||||||||||||||||||| Sbjct: 1632 acaccagcattcttggcgat 1613 Score = 71.9 bits (36), Expect = 3e-09 Identities = 73/84 (86%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctcaacggcagccttggtttgcgtttag 673 |||||||| || ||||||||||||||||||||||| || || ||||| | |||| || || Sbjct: 1503 agagtgcaaccaccaccaacaacaataccttcctcgacagcggcctttg-ttgcattaag 1445 Query: 674 agcatcctcaactcgcaacttctt 697 |||||| ||||||| ||||||||| Sbjct: 1444 agcatcttcaactctcaacttctt 1421
>gb|M35600.1|BNA60CPNB B.napus plastid 60-kDa chaperonin-60 beta-polypeptide (cpn-60 beta) mRNA, partial cds Length = 1982 Score = 127 bits (64), Expect = 5e-26 Identities = 190/232 (81%) Strand = Plus / Minus Query: 274 ggctcaggctccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccacc 333 |||||||||||||||||||| || ||||| ||| ||| ||| ||| ||||| || ||| Sbjct: 1820 ggctcaggctccttgatctcaacaaccacacagtcagacatcaagaatgtctttgcaacc 1761 Query: 334 gacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagcc 393 || || ||||| |||| |||||||||||| |||||||| || |||||||| || |||||| Sbjct: 1760 gaagctgcatgttccaagcaacatctcacaaccttagttggatcgatgattcctgcagcc 1701 Query: 394 atcaagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaa 453 || | |||||||||| || || || || ||||| |||||||| | || ||||||||| Sbjct: 1700 attagatcctcgtacttgccggttgcagcattgtaaccgaacttcacattatcgttagaa 1641 Query: 454 agaaccttctcggtaacaacactgccattgacaccagcattcttggcgatca 505 || ||||||||| |||| || || |||||||| || ||||||||||| |||| Sbjct: 1640 agcaccttctcgctaactacgcttccattgactcctgcattcttggcaatca 1589 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 626 ccaccaacaacaataccttcctcaacggcagcctt 660 |||||||| ||||| ||||||||||| |||||||| Sbjct: 1469 ccaccaacgacaattccttcctcaacagcagcctt 1435
>ref|NM_112193.1| Arabidopsis thaliana ATP binding / protein binding AT3G13470 mRNA, complete cds Length = 1922 Score = 95.6 bits (48), Expect = 2e-16 Identities = 256/324 (79%), Gaps = 1/324 (0%) Strand = Plus / Minus Query: 337 gcggcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatc 396 |||||||| || | |||||||||||| ||||| || ||||||||||| || ||||||||| Sbjct: 1682 gcggcatgttctaagcaacatctcacaacctttgtcgggtcgatgatgcctgcagccatc 1623 Query: 397 aagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaaga 456 | ||| || |||| || || || || ||||| || || || | || ||||||| || Sbjct: 1622 aggtcttcatacttgccggttgcagcattgtatccaaatttcacattatcgttagccagc 1563 Query: 457 accttctcggtaacaacactgccattgacaccagcattcttggcgatcaactttgagtgg 516 ||||||||| | |||||||| ||||| |||||||||||||| || ||||| ||| || || Sbjct: 1562 accttctcgctgacaacacttccattaacaccagcattcttagctatcaa-tttcagagg 1504 Query: 517 gtagcacagcgccctcctcactatctcagctccgaccttctgctcgtcgttctccagggt 576 ||| | ||| || || | || || || ||||| ||||| | || || || || ||||| Sbjct: 1503 gtaactcagtgctcttttaacaatttccgctccaaccttttcttcatcattttcaagggt 1444 Query: 577 gtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaac 636 |||||||||||||| ||||| | || |||| | |||||||| || |||||||| || Sbjct: 1443 atccttgatggcatcgacctttgatgcaagccggagcagagtgcaaccaccaccaacgac 1384 Query: 637 aataccttcctcaacggcagcctt 660 ||||||||||||||| |||||||| Sbjct: 1383 aataccttcctcaacagcagcctt 1360
>dbj|AK118623.2| Arabidopsis thaliana At3g13470 mRNA for putative chaperonin 60 beta, complete cds, clone: RAFL19-88-M03 Length = 471 Score = 75.8 bits (38), Expect = 2e-10 Identities = 137/170 (80%) Strand = Plus / Minus Query: 337 gcggcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatc 396 |||||||| || | |||||||||||| ||||| || ||||||||||| || ||||||||| Sbjct: 185 gcggcatgttctaagcaacatctcacaacctttgtcgggtcgatgatgcctgcagccatc 126 Query: 397 aagtcctcgtactgcccagtggctgcgttgtagccgaacttgaagttgtcgttagaaaga 456 | ||| || |||| || || || || ||||| || || || | || ||||||| || Sbjct: 125 aggtcttcatacttgccggttgcagcattgtatccaaatttcacattatcgttagccagc 66 Query: 457 accttctcggtaacaacactgccattgacaccagcattcttggcgatcaa 506 ||||||||| | |||||||| ||||| |||||||||||||| || ||||| Sbjct: 65 accttctcgctgacaacacttccattaacaccagcattcttagctatcaa 16
>ref|NM_125033.3| Arabidopsis thaliana ATP binding / protein binding AT5G56500 transcript variant AT5G56500.1 mRNA, complete cds Length = 2315 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 449 tagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaact 508 |||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 1661 tagaaagaaccttctcactgacaacgctgccattgacaccagcgttcttggcgattaact 1602 Query: 509 t 509 | Sbjct: 1601 t 1601 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctcaacggcagcctt 660 ||||| || ||||| ||||||||||||||||| || || |||||||| Sbjct: 1497 agagtacatcctccgccaacaacaataccttcttccacagcagcctt 1451 Score = 40.1 bits (20), Expect = 9.5 Identities = 47/56 (83%) Strand = Plus / Minus Query: 340 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 395 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 1770 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 1715
>ref|NM_001037006.1| Arabidopsis thaliana ATP binding / protein binding AT5G56500 transcript variant AT5G56500.2 mRNA, complete cds Length = 2355 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 449 tagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaact 508 |||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 1701 tagaaagaaccttctcactgacaacgctgccattgacaccagcgttcttggcgattaact 1642 Query: 509 t 509 | Sbjct: 1641 t 1641 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctcaacggcagcctt 660 ||||| || ||||| ||||||||||||||||| || || |||||||| Sbjct: 1537 agagtacatcctccgccaacaacaataccttcttccacagcagcctt 1491 Score = 40.1 bits (20), Expect = 9.5 Identities = 47/56 (83%) Strand = Plus / Minus Query: 340 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 395 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 1810 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 1755
>dbj|AK220921.1| Arabidopsis thaliana mRNA for RuBisCO subunit binding-protein beta subunit precursor, partial cds, clone: RAFL22-49-H21 Length = 766 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 449 tagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaact 508 |||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 299 tagaaagaaccttctcactgacaacgctgccattgacaccagcgttcttggcgattaact 240 Query: 509 t 509 | Sbjct: 239 t 239 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctcaacggcagcctt 660 ||||| || ||||| ||||||||||||||||| || || |||||||| Sbjct: 135 agagtacatcctccgccaacaacaataccttcttccacagcagcctt 89 Score = 40.1 bits (20), Expect = 9.5 Identities = 47/56 (83%) Strand = Plus / Minus Query: 340 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 395 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 408 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 353
>emb|BX832336.1|CNS09ZVE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH66ZD09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 916 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 449 tagaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaact 508 |||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 522 tagaaagaaccttctcactgacaacgctgccattgacaccagcgttcttggcgattaact 463 Query: 509 t 509 | Sbjct: 462 t 462 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctcaacggcagcctt 660 ||||| || ||||| ||||||||||||||||| || || |||||||| Sbjct: 358 agagtacatcctccgccaacaacaataccttcttccacagcagcctt 312 Score = 40.1 bits (20), Expect = 9.5 Identities = 47/56 (83%) Strand = Plus / Minus Query: 340 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 395 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 631 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 576
>gb|DQ226886.1| Boechera divaricarpa isolate SLW-C-H11 mRNA sequence Length = 331 Score = 69.9 bits (35), Expect = 1e-08 Identities = 131/163 (80%) Strand = Plus / Minus Query: 244 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 303 ||||||||||| |||||| ||| ||| || || ||||| ||||||||||| || || || Sbjct: 163 gagttgtccattgggttgccgacgggggctggttcaggttccttgatctcaacaacaaca 104 Query: 304 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 363 ||||||| ||| ||| ||||| || || || || || || |||| |||||||||||| Sbjct: 103 cagtccgacatcaagaacgtctttgcaactgaagctgcgtgttccaagcaacatctcaca 44 Query: 364 accttagtggggtcgatgataccagcagccatcaagtcctcgt 406 ||||| || || |||||||| || |||||||| || ||||||| Sbjct: 43 acctttgttggatcgatgattcctgcagccattaaatcctcgt 1
>gb|L27473.1|CRECPN1C Chlamydomonas reinhardtii chaperonin beta-like subunit, partial cds Length = 1618 Score = 67.9 bits (34), Expect = 4e-08 Identities = 97/118 (82%) Strand = Plus / Minus Query: 288 gatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctc 347 ||||||| |||||||||||| | | |||||||||||||||||||||| |||| | ||| Sbjct: 729 gatctcggtgaccaccacgtcagccagcaggaaggtcttggccaccgacacggcgttctc 670 Query: 348 caggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctcg 405 ||| | || | |||||||| |||||||||||||| || || |||||| ||||||| Sbjct: 669 cagcgagcagcggaccaccttggtggggtcgatgatgccggcctccatcaggtcctcg 612
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 328 gccaccgacgcggcatgctccaggcaacatctcaccacct 367 ||||||||||| |||||||||| ||||||||||||||||| Sbjct: 163146 gccaccgacgcagcatgctccaagcaacatctcaccacct 163107 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 456 aaccttctcggtaacaacactgccattgacaccagcatt 494 ||||||||| |||||||||||||| || ||||||||||| Sbjct: 162650 aaccttctcagtaacaacactgccgttaacaccagcatt 162612 Score = 48.1 bits (24), Expect = 0.039 Identities = 57/68 (83%) Strand = Plus / Minus Query: 584 atggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaatacct 643 ||||||||||| || | || |||| |||||| || || || || ||||||||||||||| Sbjct: 162418 atggcatcaacttttgatgcaagccgcaaaagcgtacagccacctccaacaacaatacct 162359 Query: 644 tcctcaac 651 |||||||| Sbjct: 162358 tcctcaac 162351 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 364 accttagtggggtcgatgataccagcagccatcaagtcctc 404 ||||| ||||| || || ||||||||||||||||| ||||| Sbjct: 162831 accttggtgggatcaataataccagcagccatcaaatcctc 162791
>emb|BX831822.1|CNS09YNB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH31ZC11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1462 Score = 63.9 bits (32), Expect = 7e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 450 agaaagaaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaactt 509 ||||||||||||||| | ||||| |||||||| |||||||| ||||||||||| ||||| Sbjct: 1054 agaaagaaccttctcactgacaacgctgccatttacaccagcgttcttggcgattaactt 995 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctcaacggcagcctt 660 ||||| || ||||| ||||||||||||||||| || || |||||||| Sbjct: 891 agagtacatcctccgccaacaacaataccttcttccacagcagcctt 845 Score = 40.1 bits (20), Expect = 9.5 Identities = 47/56 (83%) Strand = Plus / Minus Query: 340 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 395 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 1164 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 1109
>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15 Length = 83287 Score = 63.9 bits (32), Expect = 7e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 572 agggtgtccttgatggcatcaaccttagcagccagcctcaaaagagtgcaccctccacca 631 ||||| |||||||||||||| ||||| | || |||| | |||||||| || |||||| Sbjct: 45857 agggtatccttgatggcatcgacctttgatgcaagccggagcagagtgcaaccaccacca 45798 Query: 632 acaacaataccttcctcaacggcagcct 659 || ||||||||||||||||| ||||||| Sbjct: 45797 acgacaataccttcctcaacagcagcct 45770 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 456 aaccttctcggtaacaacactgccattgacaccagcattcttggcgatcaa 506 |||||||||| | |||||||| ||||| |||||||||||||| || ||||| Sbjct: 46053 aaccttctcgctgacaacacttccattaacaccagcattcttagctatcaa 46003
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 328 gccaccgacgcggcatgctccaggcaacatctcaccacct 367 ||||||||||| |||||||||| ||||||||||||||||| Sbjct: 112173 gccaccgacgcagcatgctccaagcaacatctcaccacct 112134 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 456 aaccttctcggtaacaacactgccattgacaccagcatt 494 ||||||||| |||||||||||||| || ||||||||||| Sbjct: 111677 aaccttctcagtaacaacactgccgttaacaccagcatt 111639 Score = 48.1 bits (24), Expect = 0.039 Identities = 57/68 (83%) Strand = Plus / Minus Query: 584 atggcatcaaccttagcagccagcctcaaaagagtgcaccctccaccaacaacaatacct 643 ||||||||||| || | || |||| |||||| || || || || ||||||||||||||| Sbjct: 111445 atggcatcaacttttgatgcaagccgcaaaagcgtacagccacctccaacaacaatacct 111386 Query: 644 tcctcaac 651 |||||||| Sbjct: 111385 tcctcaac 111378 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 364 accttagtggggtcgatgataccagcagccatcaagtcctc 404 ||||| ||||| || || ||||||||||||||||| ||||| Sbjct: 111858 accttggtgggatcaataataccagcagccatcaaatcctc 111818
>gb|U46136.1|STU46136 Solanum tuberosum chaperonin-60 beta subunit mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2078 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 617 gtgcaccctccaccaacaacaataccttcctcaacggcagcctt 660 ||||||||||| ||||||||||||||||||||||| || ||||| Sbjct: 1449 gtgcaccctcctccaacaacaataccttcctcaacagccgcctt 1406 Score = 44.1 bits (22), Expect = 0.61 Identities = 97/122 (79%) Strand = Plus / Minus Query: 280 ggctccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcg 339 |||||||||||||| || ||||| || ||| ||| ||| ||||| ||||| || || Sbjct: 1785 ggctccttgatctcaaccaccacgcaatctgacatcaagaatgtcttagccacagatgca 1726 Query: 340 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaag 399 || || || || ||||| ||||||||||| || || || ||||| ||||||||||| ||| Sbjct: 1725 gcgtgttctagacaacacctcaccacctttgttggatcaatgatgccagcagccattaag 1666 Query: 400 tc 401 || Sbjct: 1665 tc 1664
>gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14, complete sequence Length = 87967 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 457 accttctcggtaacaacactgccattgacaccagcattcttggcgat 503 ||||||||| |||| ||||| ||||| |||||||||||||||||||| Sbjct: 54712 accttctcgctaactacacttccattaacaccagcattcttggcgat 54666 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctc 648 |||||||| || ||||||||||||||||||||||| Sbjct: 54482 agagtgcaaccaccaccaacaacaataccttcctc 54448 Score = 48.1 bits (24), Expect = 0.039 Identities = 99/124 (79%) Strand = Plus / Minus Query: 244 gagttgtccatggggttgacgaggggcgcgggctcaggctccttgatctcgacgaccacc 303 ||||||||||| |||||| ||| ||| | || ||||| ||||||||||| || || || Sbjct: 55104 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 55045 Query: 304 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 363 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 55044 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 54985 Query: 364 acct 367 |||| Sbjct: 54984 acct 54981 Score = 44.1 bits (22), Expect = 0.61 Identities = 31/34 (91%) Strand = Plus / Minus Query: 376 tcgatgataccagcagccatcaagtcctcgtact 409 |||||||| || ||||||||||| |||||||||| Sbjct: 54880 tcgatgattcctgcagccatcaaatcctcgtact 54847
>gb|L27471.1|CRECPN1A Chlamydomonas reinhardtii chaperonin beta-like subunit, complete cds Length = 1970 Score = 61.9 bits (31), Expect = 3e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 297 gaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaaca 356 |||||||||||||| | |||||||||||||||||||||| |||| | ||||| | | || Sbjct: 1227 gaccaccacgtccgccagcaggaaggtcttggccaccgacacggcgttctccatggagca 1168 Query: 357 tctcaccaccttagtggggtcgatgat 383 | |||||||| | |||||||||||| Sbjct: 1167 gcggaccaccttggaggggtcgatgat 1141
>dbj|AB019234.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKN22 Length = 27229 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 469 acaacactgccattgacaccagcattcttggcgatcaactt 509 ||||| ||||||||||||||||| ||||||||||| ||||| Sbjct: 1913 acaacgctgccattgacaccagcgttcttggcgattaactt 1873 Score = 44.1 bits (22), Expect = 0.61 Identities = 40/46 (86%) Strand = Plus / Minus Query: 614 agagtgcaccctccaccaacaacaataccttcctcaacggcagcct 659 ||||| || ||||| ||||||||||||||||| || || ||||||| Sbjct: 1669 agagtacatcctccgccaacaacaataccttcttccacagcagcct 1624 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 340 gcatgctccaggcaacatctcaccacctt 368 |||||||| |||||||||||||| ||||| Sbjct: 2197 gcatgctctaggcaacatctcacaacctt 2169
>dbj|AB158542.1| Ipomoea nil cpn60 beta mRNA for 60 kDa chaperonin beta subunit-like protein, partial cds Length = 437 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 352 caacatctcaccaccttagtggggtcgatgataccagcagccatcaagtc 401 ||||||||||||||||| || || || || || ||||||||||||||||| Sbjct: 50 caacatctcaccaccttggttggatcaataattccagcagccatcaagtc 1
>gb|BT013332.1| Lycopersicon esculentum clone 135060F, mRNA sequence Length = 2189 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 469 acaacactgccattgacaccagcattcttggcgatcaactt 509 |||||||| ||||| ||||||||||||||||| || ||||| Sbjct: 1625 acaacacttccattaacaccagcattcttggctattaactt 1585 Score = 48.1 bits (24), Expect = 0.039 Identities = 48/56 (85%) Strand = Plus / Minus Query: 340 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 395 |||||||||| ||||||||| ||||| || || || || || |||||||||||||| Sbjct: 1754 gcatgctccaagcaacatcttaccacttttgtaggatcaattataccagcagccat 1699
>gb|U21139.1|PSU21139 Pisum sativum chaperonin precursor mRNA, chloroplast gene encoding chloroplast protein, complete cds Length = 2162 Score = 48.1 bits (24), Expect = 0.039 Identities = 48/56 (85%) Strand = Plus / Minus Query: 340 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 395 ||||| |||||||||||||| |||||||| || || || ||||| || |||||||| Sbjct: 1794 gcatgttccaggcaacatctgaccacctttgttggatcaatgatccctgcagccat 1739 Score = 48.1 bits (24), Expect = 0.039 Identities = 39/44 (88%) Strand = Plus / Minus Query: 454 agaaccttctcggtaacaacactgccattgacaccagcattctt 497 ||||||||||| | |||||||| ||||| |||||||||||||| Sbjct: 1680 agaaccttctcactcacaacactaccattaacaccagcattctt 1637
>dbj|AK063576.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H02, full insert sequence Length = 1124 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagccttggtt 664 ||||||||||||| ||||| |||||||||||| Sbjct: 657 caacaataccttcttcaactgcagccttggtt 626
>dbj|AB236859.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C766 Length = 1971 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 623 cctccaccaacaacaataccttcctcaacggcagc 657 ||||||||| ||||||||||||||||| |||||| Sbjct: 1411 cctccaccaggaacaataccttcctcaatggcagc 1377
>dbj|AB236852.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: C618 Length = 1443 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 623 cctccaccaacaacaataccttcctcaacggcagc 657 ||||||||| ||||||||||||||||| |||||| Sbjct: 1006 cctccaccaggaacaataccttcctcaatggcagc 972
>dbj|AB236850.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C580 Length = 1986 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 623 cctccaccaacaacaataccttcctcaacggcagc 657 ||||||||| ||||||||||||||||| |||||| Sbjct: 1433 cctccaccaggaacaataccttcctcaatggcagc 1399
>dbj|AB236844.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C447 Length = 1999 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 623 cctccaccaacaacaataccttcctcaacggcagc 657 ||||||||| ||||||||||||||||| |||||| Sbjct: 1429 cctccaccaggaacaataccttcctcaatggcagc 1395
>dbj|AB236783.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C1772 Length = 2038 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 623 cctccaccaacaacaataccttcctcaacggcagc 657 ||||||||| ||||||||||||||||| |||||| Sbjct: 1421 cctccaccaggaacaataccttcctcaatggcagc 1387
>dbj|AB236779.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C1724 Length = 1982 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 623 cctccaccaacaacaataccttcctcaacggcagc 657 ||||||||| ||||||||||||||||| |||||| Sbjct: 1413 cctccaccaggaacaataccttcctcaatggcagc 1379
>dbj|AB236775.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: C1598 Length = 2018 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 623 cctccaccaacaacaataccttcctcaacggcagc 657 ||||||||| ||||||||||||||||| |||||| Sbjct: 1357 cctccaccaggaacaataccttcctcaatggcagc 1323
>gb|AF233387.1| Rhodococcus equi GroEL (groEL) gene, complete cds; and unknown genes Length = 4713 Score = 44.1 bits (22), Expect = 0.61 Identities = 46/54 (85%) Strand = Plus / Minus Query: 373 gggtcgatgataccagcagccatcaagtcctcgtactgcccagtggctgcgttg 426 |||||| |||| |||||||||| || ||||||||||| || ||||| |||||| Sbjct: 4311 gggtcgttgatgccagcagccagcaggtcctcgtactcaccggtggcggcgttg 4258
>ref|XM_975351.1| PREDICTED: Mus musculus similar to odd Oz/ten-m homolog 2 (LOC669490), mRNA Length = 7697 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 ggagttgtccatggggttgacg 264 |||||||||||||||||||||| Sbjct: 2277 ggagttgtccatggggttgacg 2256
>ref|XM_546253.2| PREDICTED: Canis familiaris similar to odd Oz/ten-m homolog 2 (LOC489135), mRNA Length = 8210 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 ggagttgtccatggggttgacg 264 |||||||||||||||||||||| Sbjct: 3873 ggagttgtccatggggttgacg 3852
>emb|AL645912.18| Mouse DNA sequence from clone RP23-134G19 on chromosome 11 Contains the 5' end of the gene for a novel protein similar to human KIBRA, a pseudogene similar to part of actin, the Odz2 gene for odd Oz/ten-m homolog 2 (Drosophila) and two CpG islands, complete sequence Length = 186736 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 ggagttgtccatggggttgacg 264 |||||||||||||||||||||| Sbjct: 113689 ggagttgtccatggggttgacg 113710
>emb|AL606512.8| Mouse DNA sequence from clone RP23-155D19 on chromosome 11, complete sequence Length = 157494 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 71 taaatgtttctctgcttatttc 92 |||||||||||||||||||||| Sbjct: 138017 taaatgtttctctgcttatttc 138038
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 364 accttagtggggtcgatgataccagc 389 |||||||| ||||||||||||||||| Sbjct: 381194 accttagttgggtcgatgataccagc 381169
>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5) Length = 896449 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 635 acaataccttcctcaacggcagccttggtt 664 ||||||||||||||||| |||||| ||||| Sbjct: 874598 acaataccttcctcaacagcagccctggtt 874569
>ref|NM_011856.2| Mus musculus odd Oz/ten-m homolog 2 (Drosophila) (Odz2), mRNA Length = 8797 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 ggagttgtccatggggttgacg 264 |||||||||||||||||||||| Sbjct: 4366 ggagttgtccatggggttgacg 4345
>dbj|AB025411.1| Mus musculus mRNA for Ten-m2, complete cds Length = 8797 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 ggagttgtccatggggttgacg 264 |||||||||||||||||||||| Sbjct: 4366 ggagttgtccatggggttgacg 4345
>gb|AY346183.1| Streptococcus bovis isolate ntuhB1557 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346180.1| Streptococcus bovis isolate ntuh6250 GroEL (groEL) gene, partial cds Length = 694 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 348 caacaataccttcttcaacggcagc 324
>gb|AY346179.1| Streptococcus bovis isolate ntuh1956 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346178.1| Streptococcus bovis isolate ntuh8995 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346176.1| Streptococcus bovis isolate ntuh1590 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346173.1| Streptococcus bovis isolate ntuh550 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346172.1| Streptococcus bovis isolate ntuh506 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346171.1| Streptococcus bovis isolate ntuh2566 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346170.1| Streptococcus bovis isolate ntuh6528 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346167.1| Streptococcus bovis isolate ntuh7703 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346166.1| Streptococcus bovis isolate ntuh7499 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346165.1| Streptococcus bovis isolate ntuhMy1043-2 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346164.1| Streptococcus bovis isolate ntuh7051 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346163.1| Streptococcus bovis isolate ntuh6882 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346162.1| Streptococcus bovis isolate ntuh7421 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346160.1| Streptococcus bovis isolate ntuh6222 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346157.1| Streptococcus bovis isolate ntuh3004 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>gb|AY346156.1| Streptococcus bovis strain ATCC 43143 GroEL (groEL) gene, partial cds Length = 695 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 349 caacaataccttcttcaacggcagc 325
>ref|XM_614930.2| PREDICTED: Bos taurus similar to odd Oz/ten-m homolog 2 (LOC541183), mRNA Length = 4770 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 ggagttgtccatggggttgac 263 ||||||||||||||||||||| Sbjct: 1563 ggagttgtccatggggttgac 1543
>gb|AE006276.1| Lactococcus lactis subsp. lactis IL1403 section 38 of 218 of the complete genome Length = 12560 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 634 aacaataccttcctcaacggc 654 ||||||||||||||||||||| Sbjct: 5094 aacaataccttcctcaacggc 5074
>emb|AL592423.8| Human DNA sequence from clone RP11-1A24 on chromosome 6 Contains part of the GRM1 gene for metabotropic glutamate receptor 1 and a novel pseudogene, complete sequence Length = 53728 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 tgcatttttcttatctcaaaa 137 ||||||||||||||||||||| Sbjct: 4551 tgcatttttcttatctcaaaa 4531
>emb|X71132.1|LLGROESEL L.lactis groES and groEL genes Length = 2267 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 634 aacaataccttcctcaacggc 654 ||||||||||||||||||||| Sbjct: 1847 aacaataccttcctcaacggc 1827
>gb|AF389514.1| Streptococcus bovis GroES gene, complete cds; and GroEL gene, partial cds Length = 2054 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 633 caacaataccttcctcaacggcagc 657 ||||||||||||| ||||||||||| Sbjct: 1674 caacaataccttcttcaacggcagc 1650
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 633 caacaataccttcctcaacggcagc 657 |||||||||||||||| |||||||| Sbjct: 431294 caacaataccttcctctacggcagc 431318
>gb|AC154516.2| Mus musculus BAC clone RP24-83D23 from chromosome 14, complete sequence Length = 216566 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ccacatcctctggagagactccac 218 |||| ||||||||||||||||||| Sbjct: 70428 ccacttcctctggagagactccac 70405
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 tccttgatggcatcaacctt 597 |||||||||||||||||||| Sbjct: 938152 tccttgatggcatcaacctt 938133
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome Length = 2572079 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 626 ccaccaacaacaataccttc 645 |||||||||||||||||||| Sbjct: 1773687 ccaccaacaacaataccttc 1773668
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tctcgacgaccaccacgtcc 309 |||||||||||||||||||| Sbjct: 36065 tctcgacgaccaccacgtcc 36084
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tctcgacgaccaccacgtcc 309 |||||||||||||||||||| Sbjct: 839910 tctcgacgaccaccacgtcc 839929
>gb|AC129219.3| Mus musculus BAC clone RP24-474C15 from chromosome 14, complete sequence Length = 195935 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ccacatcctctggagagactccac 218 |||| ||||||||||||||||||| Sbjct: 148108 ccacttcctctggagagactccac 148085
>emb|AM085495.1| Helicoverpa zea mRNA for carboxypeptidase B (cpb gene) Length = 1361 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 627 caccaacaacaataccttcc 646 |||||||||||||||||||| Sbjct: 1282 caccaacaacaataccttcc 1263
>gb|AC116470.12| Mus musculus chromosome 16, clone RP23-383N18, complete sequence Length = 194593 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ctctcaaaacttggttcatg 179 |||||||||||||||||||| Sbjct: 46054 ctctcaaaacttggttcatg 46073
>gb|AC129595.3| Mus musculus BAC clone RP23-257H19 from chromosome 7, complete sequence Length = 214318 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 aacttggttcatgctaccaaaaat 190 |||||||||||||||| ||||||| Sbjct: 67422 aacttggttcatgctatcaaaaat 67399
>ref|XM_809994.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503893.50) partial mRNA Length = 1215 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 612 aaagagtgcaccctccacca 631 |||||||||||||||||||| Sbjct: 159 aaagagtgcaccctccacca 140
>ref|XM_546476.2| PREDICTED: Canis familiaris similar to RIKEN cDNA E130107N23 (LOC489358), mRNA Length = 1576 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 tcggtaacaacactgccatt 482 |||||||||||||||||||| Sbjct: 1031 tcggtaacaacactgccatt 1012
>gb|AC164642.3| Mus musculus BAC clone RP23-248L4 from chromosome 6, complete sequence Length = 212166 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 agcctcaaaagagtgcaccc 624 |||||||||||||||||||| Sbjct: 178919 agcctcaaaagagtgcaccc 178900
>gb|AC164636.4| Mus musculus BAC clone RP23-70P16 from chromosome 6, complete sequence Length = 212096 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 605 agcctcaaaagagtgcaccc 624 |||||||||||||||||||| Sbjct: 183735 agcctcaaaagagtgcaccc 183754
>emb|AL049867.2|HSJ738I16 Human DNA sequence from clone RP4-738I16 on chromosome 20p11.22-12.2 Contains STSs and GSSs, complete sequence Length = 96444 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 597 tagcagccagcctcaaaaga 616 |||||||||||||||||||| Sbjct: 47921 tagcagccagcctcaaaaga 47902
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tctcgacgaccaccacgtcc 309 |||||||||||||||||||| Sbjct: 682326 tctcgacgaccaccacgtcc 682345
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 caccaccttagtggggtcgatgat 383 ||||||||| |||||||||||||| Sbjct: 3516159 caccaccttggtggggtcgatgat 3516136
>gb|AC146331.35| Medicago truncatula clone mth2-7h18, complete sequence Length = 138838 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 57 caagaaatttccgctaaatgtttctctg 84 ||||||||||||||||||| || ||||| Sbjct: 37650 caagaaatttccgctaaattttgctctg 37623
>gb|AC115621.3| Homo sapiens BAC clone RP11-315D13 from 4, complete sequence Length = 148726 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 tttttcttatctcaaaacta 140 |||||||||||||||||||| Sbjct: 110055 tttttcttatctcaaaacta 110036
>gb|AF304017.1| Bartonella taylorii heat shock protein Hsp60 (groEL) gene, partial cds Length = 1364 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 626 ccaccaacaacaataccttcctcaacggcagc 657 |||||| ||||||||||||| ||||| ||||| Sbjct: 1059 ccaccagcaacaataccttcttcaacagcagc 1028
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 ccagcctcaaaagagtgcac 622 |||||||||||||||||||| Sbjct: 1902020 ccagcctcaaaagagtgcac 1902039
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 650 acggcagccttggtttgcgt 669 |||||||||||||||||||| Sbjct: 2207594 acggcagccttggtttgcgt 2207575
>gb|U21105.1|PSU21105 Pisum sativum alphacpn60 precursor (alphacpn60) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1977 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 623 cctccaccaacaacaataccttcctcaa 650 ||||||||| ||||||||||||||||| Sbjct: 1412 cctccaccaggaacaataccttcctcaa 1385
>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence Length = 184457 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 ctccttgatctcgacgaccaccac 305 ||||||||||||| |||||||||| Sbjct: 73942 ctccttgatctcgccgaccaccac 73965
>gb|AF065610.1|AF065610 Toxoplasma gondii strain 76K heat shock protein 60 pseudogene, mRNA sequence Length = 2442 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 370 gtggggtcgatgataccagcagccatca 397 |||||||||||||| || |||||||||| Sbjct: 1633 gtggggtcgatgatgccggcagccatca 1606
>gb|AF065609.1|AF065609 Toxoplasma gondii strain 76K heat shock protein 60 mRNA, complete cds Length = 2430 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 370 gtggggtcgatgataccagcagccatca 397 |||||||||||||| || |||||||||| Sbjct: 1621 gtggggtcgatgatgccggcagccatca 1594
>gb|AC007630.4|AC007630 Homo sapiens chromosome 20 clone P1-7739, complete sequence Length = 169494 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 597 tagcagccagcctcaaaaga 616 |||||||||||||||||||| Sbjct: 66185 tagcagccagcctcaaaaga 66166
>gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome 7, complete sequence Length = 237233 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 cgtcaggaaggtcttggcca 331 |||||||||||||||||||| Sbjct: 177375 cgtcaggaaggtcttggcca 177394
>gb|AF014833.1|AF014833 Bartonella grahamii 60 kDa heat shock protein (groEL) gene, partial cds Length = 1522 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 626 ccaccaacaacaataccttcctcaacggcagc 657 |||||| ||||||||||||| ||||| ||||| Sbjct: 1145 ccaccagcaacaataccttcttcaacagcagc 1114
>dbj|AP000943.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867G2, complete sequence Length = 192299 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctgttccaattacatcaaga 61 |||||||||||||||||||| Sbjct: 58924 ctgttccaattacatcaaga 58905
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tctcgacgaccaccacgtcc 309 |||||||||||||||||||| Sbjct: 590826 tctcgacgaccaccacgtcc 590845
>emb|BX000537.11| Mouse DNA sequence from clone RP24-392J24 on chromosome X, complete sequence Length = 162188 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 ttaaaccacatcctctggag 209 |||||||||||||||||||| Sbjct: 5328 ttaaaccacatcctctggag 5347
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 cttcctcaacggcagccttggttt 665 |||||||||||||||||| ||||| Sbjct: 3498652 cttcctcaacggcagcctgggttt 3498629
>emb|AL163973.1|CNS05TBS Human chromosome 14 DNA sequence BAC C-2213F21 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 116503 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 atcacattgcatttttcttatctc 133 ||||||||||||||| |||||||| Sbjct: 72480 atcacattgcattttacttatctc 72503 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,402,505 Number of Sequences: 3902068 Number of extensions: 5402505 Number of successful extensions: 99845 Number of sequences better than 10.0: 115 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99255 Number of HSP's gapped (non-prelim): 560 length of query: 697 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 674 effective length of database: 17,143,297,704 effective search space: 11554582652496 effective search space used: 11554582652496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)