ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd13n07 |
|---|---|
| Clone Library Name | barley_pub |
>PSD13_HUMAN (Q9UNM6) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 125 bits (315), Expect = 9e-29 Identities = 63/149 (42%), Positives = 94/149 (63%) Frame = -1 Query: 640 EWIYHILQAFNSGNLASYQELCKVHATALGAQPALVQKERELLEKINVLCLMEIIFSRAS 461 +W+ L AFNSGN+ +Q L TA G QP L E +LL KI +LCLME+ F+R + Sbjct: 231 QWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPA 286 Query: 460 QDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGIDQV 281 R + IA+ +++V +VE L+MK+LS L++G ID VD VH++W QPRVL + Q+ Sbjct: 287 NHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI 346 Query: 280 KSLRDRLDTWVGKVHTTLLSVEAETPDLV 194 K ++DRL+ W V + + VE + D++ Sbjct: 347 KGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>PSD13_BOVIN (Q5E964) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 125 bits (314), Expect = 1e-28 Identities = 63/149 (42%), Positives = 93/149 (62%) Frame = -1 Query: 640 EWIYHILQAFNSGNLASYQELCKVHATALGAQPALVQKERELLEKINVLCLMEIIFSRAS 461 +W+ L AFNSGN+ +Q L TA G QP L E +LL KI +LCLME+ F+R + Sbjct: 231 QWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPA 286 Query: 460 QDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGIDQV 281 R + IA +++V +VE L+MK+LS L++G ID VD VH++W QPRVL + Q+ Sbjct: 287 NHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI 346 Query: 280 KSLRDRLDTWVGKVHTTLLSVEAETPDLV 194 K ++DRL+ W V + + VE + D++ Sbjct: 347 KGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>PSD13_CHICK (P84169) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 124 bits (310), Expect = 4e-28 Identities = 62/149 (41%), Positives = 95/149 (63%) Frame = -1 Query: 640 EWIYHILQAFNSGNLASYQELCKVHATALGAQPALVQKERELLEKINVLCLMEIIFSRAS 461 +W+ L AFNSGN+ ++Q L +A G QP L E LL+KI +LCLME+ F+R + Sbjct: 231 QWLIDTLYAFNSGNVETFQAL----KSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRPA 286 Query: 460 QDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGIDQV 281 R + IA+ +++V +VE L+MK+LS L++G ID VD VH++W QPRVL + Q+ Sbjct: 287 NHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI 346 Query: 280 KSLRDRLDTWVGKVHTTLLSVEAETPDLV 194 K ++DRL+ W V + + VE + D++ Sbjct: 347 KGMKDRLEFWCTDVRSMEMLVEHQAHDIL 375
>PSD13_MOUSE (Q9WVJ2) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 119 bits (298), Expect = 9e-27 Identities = 61/149 (40%), Positives = 90/149 (60%) Frame = -1 Query: 640 EWIYHILQAFNSGNLASYQELCKVHATALGAQPALVQKERELLEKINVLCLMEIIFSRAS 461 +W+ L AFNSG + +Q L A G QP L E +LL KI +LCLME+ F+R + Sbjct: 231 QWLIDTLYAFNSGAVDRFQTL----KCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPA 286 Query: 460 QDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGIDQV 281 R + IA+ +++V VE L+MK+LS L+ G ID VD VH++W QPRVL + Q+ Sbjct: 287 NHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQI 346 Query: 280 KSLRDRLDTWVGKVHTTLLSVEAETPDLV 194 K ++DRL+ W V + + VE + D++ Sbjct: 347 KGMKDRLELWCTDVKSMEMLVEHQAQDIL 375
>RPN9_YEAST (Q04062) 26S proteasome regulatory subunit RPN9 (Proteasome| non-ATPase subunit 7) Length = 393 Score = 84.7 bits (208), Expect = 2e-16 Identities = 46/143 (32%), Positives = 81/143 (56%) Frame = -1 Query: 640 EWIYHILQAFNSGNLASYQELCKVHATALGAQPALVQKERELLEKINVLCLMEIIFSRAS 461 +W++ +L A G+ + L KV + + P L Q E L +KI ++ L+E +F + Sbjct: 249 DWLFQLLNALTVGDFDKFDSLIKVQISKI---PILAQHESFLRQKICLMTLIETVFVK-- 303 Query: 460 QDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGIDQV 281 R + I++ T L ++VE+L+M+++S L++G ID V+ V +SW QPR++ DQ+ Sbjct: 304 NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQI 363 Query: 280 KSLRDRLDTWVGKVHTTLLSVEA 212 ++DRL W +V +EA Sbjct: 364 TKMKDRLVEWNDQVEKLGKKMEA 386
>RPN9_SCHPO (Q9US13) Probable 26S proteasome regulatory subunit rpn9| Length = 381 Score = 79.3 bits (194), Expect(2) = 7e-15 Identities = 44/130 (33%), Positives = 69/130 (53%) Frame = -1 Query: 640 EWIYHILQAFNSGNLASYQELCKVHATALGAQPALVQKERELLEKINVLCLMEIIFSRAS 461 EW++ ++ A N G+L ++ L + P L L +KI ++ L+E++F Sbjct: 236 EWLHDLVIAMNVGDLPLFERLMG----QINKMPLLQSSVALLGQKIRLMALIELVFQLPP 291 Query: 460 QDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGIDQV 281 RT+ TIA TR+ +VE L+M++LS LI G+ID V V +S Q R+L Q+ Sbjct: 292 NQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIVTISSVQSRILNHSQI 351 Query: 280 KSLRDRLDTW 251 S+ RL W Sbjct: 352 ASMESRLREW 361 Score = 20.8 bits (42), Expect(2) = 7e-15 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -3 Query: 686 LLAHPIIHSLVGT 648 LL HP+ LVGT Sbjct: 221 LLLHPVFELLVGT 233
>CSN7A_SCHPO (Q9UUJ7) COP9 signalosome complex subunit 7A| Length = 205 Score = 43.9 bits (102), Expect = 5e-04 Identities = 21/71 (29%), Positives = 39/71 (54%) Frame = -1 Query: 400 VEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGIDQVKSLRDRLDTWVGKVHTTLLS 221 VEY +M+++ ++ G I+ T+HVSWA R L ++ ++ LD ++ + L Sbjct: 104 VEYYIMQAMMNQILVGKINAKTQTLHVSWALERFLDSKRIDEMKYSLDRFIERCSNILFQ 163 Query: 220 VEAETPDLVAS 188 ++A TP + S Sbjct: 164 LDAGTPSVSKS 174
>YCYL_CAEEL (Q22523) Hypothetical zinc metalloproteinase T16A9.4 (EC 3.4.24.-)| Length = 769 Score = 32.0 bits (71), Expect = 1.8 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -1 Query: 631 YHILQAFNSGNLASYQELCKVHATALGAQPALVQKE 524 Y L N L +Y L K+ A ALGA PA+ +KE Sbjct: 259 YPYLSGANDPMLRNYTTLMKMTAVALGADPAIAEKE 294
>ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 827 Score = 31.2 bits (69), Expect = 3.1 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Frame = -1 Query: 445 PLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHV---SWAQPRVLGIDQVKS 275 P +T+A + ++ +++E ++ K L I GV+G VH+ SW + +V D VK Sbjct: 551 PWATVANEFKVD-DEIEGIVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVADYVKE 609 Query: 274 LRDRLDTWVGKVHTTLLSVEAETPDLVAS 188 R+++ + +H ++ LVA+ Sbjct: 610 -REKIKVRITDLHPEDRKLKLGIKQLVAN 637
>Y309_MYCGE (P47551) Hypothetical lipoprotein MG309 precursor| Length = 1225 Score = 30.8 bits (68), Expect = 4.1 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%) Frame = +3 Query: 177 KEHQEATRSGVSASTDSKVVCTFPTQVSSRSRRDFTWSIPRT----LGCAHETWTVPSTP 344 K+ +S S+ V+ V+S++ +DFT + G + WT TP Sbjct: 865 KDRNNTASQAMSVSSSKSVLVKMANNVASQTNQDFTKQEQQNPNYVFGSSAYNWTNNKTP 924 Query: 345 SIMPSIR*AERLFISRYSTSSTESL 419 ++ + L+ ++ + SS+ SL Sbjct: 925 TVNSAANDISSLYYTKNNGSSSTSL 949
>CPT2_MACFA (Q60HG9) Carnitine O-palmitoyltransferase II, mitochondrial| precursor (EC 2.3.1.21) (CPT II) Length = 658 Score = 30.4 bits (67), Expect = 5.3 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +1 Query: 238 APSRPRCPAGHAGTSPGQFQGPSVAPTKHGQSRRP 342 APSRP AG+ PGQ+ S+ PT H Q P Sbjct: 20 APSRPLS----AGSGPGQYLQRSIVPTMHYQDSLP 50
>CPT2_HUMAN (P23786) Carnitine O-palmitoyltransferase II, mitochondrial| precursor (EC 2.3.1.21) (CPT II) Length = 658 Score = 30.4 bits (67), Expect = 5.3 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +1 Query: 238 APSRPRCPAGHAGTSPGQFQGPSVAPTKHGQSRRP 342 APSRP AG+ PGQ+ S+ PT H Q P Sbjct: 20 APSRPLS----AGSGPGQYLQRSIVPTMHYQDSLP 50
>YDH2_SCHPO (Q92347) Hypothetical protein C6G9.02c in chromosome I| Length = 655 Score = 30.4 bits (67), Expect = 5.3 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = -1 Query: 529 KERELLEKINVLCLMEIIFSRASQDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGI 350 KER+L+ + L+E + Q + L ++ + LS E + ++++S+HLIEGI Sbjct: 456 KERKLVNNLLGAQLLEEMLHCEKQHIQLLLDSVLD---LSKEQILEYCLETVSSHLIEGI 512 Query: 349 ID 344 +D Sbjct: 513 LD 514
>CSN1_CAEEL (Q9GS00) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| Length = 601 Score = 30.4 bits (67), Expect = 5.3 Identities = 22/105 (20%), Positives = 47/105 (44%) Frame = -1 Query: 634 IYHILQAFNSGNLASYQELCKVHATALGAQPALVQKERELLEKINVLCLMEIIFSRASQD 455 + +L ++ S E+ + L P + + EL EKI C+++ + Sbjct: 395 LIELLGSYTSSRFGRCFEIMRSVKPRLLLDPFISRNVDELFEKIRQKCVLQYL----QPY 450 Query: 454 RTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHV 320 TI ++T+AE +S +++ L++ + + ID +G V + Sbjct: 451 STIKMATMAEAVGMSSAELQLSLLELIEQKHVSLKIDQNEGIVRI 495
>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2| precursor Length = 503 Score = 30.4 bits (67), Expect = 5.3 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 4/102 (3%) Frame = +3 Query: 123 SNSTLALCKVTDTVQQGTKEHQEATRSGVSASTDSKVVCTFPTQVSSRSRRDF----TWS 290 S+ST K + + T AT S S+ST S + T SS S T S Sbjct: 138 SSSTSVSSKTSTKLDTKTSTSSSATHSSSSSSTTSTTTSSSETTTSSSSSSSSSSTSTTS 197 Query: 291 IPRTLGCAHETWTVPSTPSIMPSIR*AERLFISRYSTSSTES 416 T T + PST S S + ++ ++SST S Sbjct: 198 TTSTTSSTTSTSSSPSTTSSSTSASSSSETSSTQATSSSTTS 239
>PRDM6_HUMAN (Q9NQX0) PR domain zinc finger protein 6 (PR domain-containing| protein 6) (Fragment) Length = 608 Score = 30.0 bits (66), Expect = 6.9 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Frame = +1 Query: 232 WCAPSRPRCPAG---HAGT-SPGQFQGPSVAPT--KHGQSRRPHQLCLQ 360 +CA +P CPAG GT PG+ G + PT + G RPH L+ Sbjct: 21 FCAVVKPTCPAGKLPERGTKEPGRGSGQAQQPTAVESGAQVRPHSRALR 69
>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1| Length = 1319 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +1 Query: 235 CAPSRPRCPAGHAGTSPGQFQ-GPSVAPTKHGQSRRP-HQL 351 C P+ PR G AGT G Q G + P++H Q P H+L Sbjct: 373 CPPALPRPQQGEAGTPSGGLQDGGPMLPSQHAQFEYPIHRL 413
>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 475 Score = 29.6 bits (65), Expect = 9.0 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +2 Query: 230 SGVHLPDPGVQPVTQGLH 283 SGVH P PGV P T G+H Sbjct: 310 SGVHPPAPGVHPPTPGVH 327 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,732,272 Number of Sequences: 219361 Number of extensions: 2398471 Number of successful extensions: 6408 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6400 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
