Clone Information

BLAST Search Result

Clone Name	rbasd13n07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY103805.1\| Zea mays PCO119314 mRNA sequence	78	4e-11
2	ref\|NM_193765.1\| Oryza sativa (japonica cultivar-group), predic...	76	2e-10
3	dbj\|AK069825.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	76	2e-10
4	dbj\|AB070261.1\| Oryza sativa (japonica cultivar-group) OsRPN9a m...	76	2e-10
5	dbj\|AK061942.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	4e-05
6	dbj\|AK101240.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	4e-05
7	dbj\|AK068605.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	4e-05
8	dbj\|AK064850.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	4e-05
9	dbj\|AB070262.1\| Oryza sativa (japonica cultivar-group) OsRPN9b m...	58	4e-05
10	ref\|NM_203160.1\| Arabidopsis thaliana unknown protein AT5G45620 ...	48	0.039
11	ref\|NM_123930.3\| Arabidopsis thaliana unknown protein AT5G45620 ...	48	0.039
12	gb\|AY230841.1\| Arabidopsis thaliana 26S proteasome subunit RPN9a...	48	0.039
13	gb\|AY093136.1\| Arabidopsis thaliana 26S proteasome subunit-like ...	48	0.039
14	emb\|BX830748.1\|CNS09ZGZ Arabidopsis thaliana Full-length cDNA Co...	48	0.039
15	gb\|BT003384.1\| Arabidopsis thaliana 26S proteasome subunit-like ...	48	0.039
16	dbj\|AB012245.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	48	0.039
17	emb\|BX832332.1\|CNS09ZTC Arabidopsis thaliana Full-length cDNA Co...	46	0.15
18	emb\|AL353739.4\| Human DNA sequence from clone RP11-19D15 on chro...	44	0.60
19	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	44	0.60
20	ref\|XM_638838.1\| Dictyostelium discoideum hypothetical protein (...	42	2.4
21	gb\|DQ333810.1\| Liua shihi mitochondrion, complete genome	42	2.4
22	gb\|AC122866.4\| Mus musculus BAC clone RP23-145J18 from 8, comple...	42	2.4
23	gb\|AC165355.3\| Mus musculus BAC clone RP23-129P10 from chromosom...	42	2.4
24	emb\|CR931736.1\| Medicago truncatula chromosome 5 clone mte1-84f2...	42	2.4
25	gb\|AC105132.4\| Homo sapiens chromosome 15, clone RP11-457H6, com...	42	2.4
26	gb\|AY593192.1\| Liua shihi NADH dehydrogenase subunit 5 (ND5) gen...	42	2.4
27	gb\|AC116986.2\| Dictyostelium discoideum chromosome 2 map 2234041...	42	2.4
28	dbj\|BS000038.1\| Pan troglodytes chromosome 22 clone:PTB-005J02, ...	42	2.4
29	gb\|AC107650.19\| Mus musculus chromosome 6, clone RP23-133I9, com...	42	2.4
30	emb\|BX001012.6\| Zebrafish DNA sequence from clone CH211-11C20 in...	42	2.4
31	dbj\|AP001671.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	42	2.4
32	gb\|AE015925.1\| Chlamydophila caviae GPIC, complete genome	42	2.4
33	dbj\|AP000404.2\| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	42	2.4
34	gb\|AE017346.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	9.4
35	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	9.4
36	gb\|AC146040.2\| Pan troglodytes BAC clone RP43-97N16 from 7, comp...	40	9.4
37	ref\|XM_571610.1\| Cryptococcus neoformans var. neoformans JEC21 h...	40	9.4
38	gb\|AC006978.2\| Homo sapiens BAC clone GS1-66B6 from 7, complete ...	40	9.4
39	ref\|XM_503490.1\| Yarrowia lipolytica CLIB122, YALI0E03234g predi...	40	9.4
40	gb\|AC104111.2\| Homo sapiens chromosome 5 clone RP11-176O14, comp...	40	9.4
41	gb\|AC022360.23\| Homo sapiens 8 BAC RP11-58O3 (Roswell Park Cance...	40	9.4
42	gb\|AC025765.6\| Homo sapiens chromosome 5 clone CTB-57H20, comple...	40	9.4
43	gb\|AC134241.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.4
44	gb\|AC135158.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.4
45	gb\|AC016925.15\|AC016925 Homo sapiens X BAC RP11-434J4 (Roswell P...	40	9.4
46	emb\|AL116163.1\|CNS01CYZ Botrytis cinerea strain T4 cDNA library	40	9.4
47	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
48	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
49	gb\|AC009916.5\|AC009916 Drosophila melanogaster, chromosome 3R, r...	40	9.4
50	gb\|AC017040.7\| Homo sapiens BAC clone RP11-319B20 from 2, comple...	40	9.4
51	gb\|AC016712.6\| Homo sapiens BAC clone RP11-266F17 from 2, comple...	40	9.4
52	gb\|AC093528.3\| Homo sapiens chromosome 5 clone RP11-297K24, comp...	40	9.4
53	gb\|AC078929.27\| Homo sapiens 12 BAC RP11-797M17 (Roswell Park Ca...	40	9.4
54	gb\|AC091619.3\| Papio anubis clone RP41-139B7, complete sequence	40	9.4
55	dbj\|AP003213.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
56	dbj\|AP003077.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
57	gb\|AC008407.4\|AC008407 Homo sapiens chromosome 5 clone CTC-278A2...	40	9.4
58	gb\|AE003748.3\| Drosophila melanogaster chromosome 3R, section 86...	40	9.4
59	dbj\|AP000808.6\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	9.4
60	dbj\|AP003732.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	9.4
61	emb\|AL121944.14\|HSDJ313I6 Human DNA sequence from clone RP1-313I...	40	9.4
62	emb\|CR382131.1\| Yarrowia lipolytica chromosome E of strain CLIB ...	40	9.4
63	dbj\|AP006375.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	40	9.4

>gb|AY103805.1| Zea mays PCO119314 mRNA sequence
          Length = 1791

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                        
Query: 313  cccacgaaacatggacagtcccgtcgaccccatcaattatgccttcaataagatgagcag 372
            ||||||||||||| || || | ||| ||  |||||||||| || |||||||||||| | |
Sbjct: 1264 cccacgaaacatgaactgtactgtccacttcatcaattattccctcaataagatgaaccg 1205

                                           
Query: 373  agaggctcttcattagtagatactccacatc 403
            ||||||||||||| || ||||||||||||||
Sbjct: 1204 agaggctcttcataaggagatactccacatc 1174

to top

>ref|NM_193765.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1158

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 128/158 (81%)
 Strand = Plus / Minus

                                                                        
Query: 246  ccgacccaggtgtccagccggtcacgcagggacttcacctggtcaattccaaggaccctc 305
            |||||||| | ||||||||| ||||||| || |||||||||   ||||||||| || || 
Sbjct: 1097 ccgacccatgcgtccagccgctcacgcaaggccttcacctgtggaattccaagtactcta 1038

                                                                        
Query: 306  ggttgcgcccacgaaacatggacagtcccgtcgaccccatcaattatgccttcaataaga 365
            || ||  |||| || || || || || | ||| ||| |||||||||| ||||| ||||||
Sbjct: 1037 ggctggacccatgacacgtgaactgtgctgtccacctcatcaattatcccttctataaga 978

                                                  
Query: 366  tgagcagagaggctcttcattagtagatactccacatc 403
            ||| | |||||||||||||| || ||||| ||||||||
Sbjct: 977  tgaaccgagaggctcttcataagaagatattccacatc 940

to top

>dbj|AK069825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028J18, full
            insert sequence
          Length = 1517

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 128/158 (81%)
 Strand = Plus / Minus

                                                                        
Query: 246  ccgacccaggtgtccagccggtcacgcagggacttcacctggtcaattccaaggaccctc 305
            |||||||| | ||||||||| ||||||| || |||||||||   ||||||||| || || 
Sbjct: 1152 ccgacccatgcgtccagccgctcacgcaaggccttcacctgtggaattccaagtactcta 1093

                                                                        
Query: 306  ggttgcgcccacgaaacatggacagtcccgtcgaccccatcaattatgccttcaataaga 365
            || ||  |||| || || || || || | ||| ||| |||||||||| ||||| ||||||
Sbjct: 1092 ggctggacccatgacacgtgaactgtgctgtccacctcatcaattatcccttctataaga 1033

                                                  
Query: 366  tgagcagagaggctcttcattagtagatactccacatc 403
            ||| | |||||||||||||| || ||||| ||||||||
Sbjct: 1032 tgaaccgagaggctcttcataagaagatattccacatc 995

to top

>dbj|AB070261.1| Oryza sativa (japonica cultivar-group) OsRPN9a mRNA for 26S
           proteasome regulatory particle non-ATPase subunit9a,
           partial cds
          Length = 707

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 128/158 (81%)
 Strand = Plus / Minus

                                                                       
Query: 246 ccgacccaggtgtccagccggtcacgcagggacttcacctggtcaattccaaggaccctc 305
           |||||||| | ||||||||| ||||||| || |||||||||   ||||||||| || || 
Sbjct: 279 ccgacccatgcgtccagccgctcacgcaaggccttcacctgtggaattccaagtactcta 220

                                                                       
Query: 306 ggttgcgcccacgaaacatggacagtcccgtcgaccccatcaattatgccttcaataaga 365
           || ||  |||| || || || || || | ||| ||| |||||||||| ||||| ||||||
Sbjct: 219 ggctggacccatgacacgtgaactgtgctgtccacctcatcaattatcccttctataaga 160

                                                 
Query: 366 tgagcagagaggctcttcattagtagatactccacatc 403
           ||| | |||||||||||||| || ||||| ||||||||
Sbjct: 159 tgaaccgagaggctcttcataagaagatattccacatc 122

to top

>dbj|AK061942.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-D11, full
           insert sequence
          Length = 1390

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 343 catcaattatgccttcaataagatgagcagagaggctcttcattagtagatactccacat 402
           |||||||||| || || ||||||||| | |||||||||||||| || ||||| |||||||
Sbjct: 831 catcaattatcccctctataagatgaaccgagaggctcttcataagaagatattccacat 772

            
Query: 403 c 403
           |
Sbjct: 771 c 771

to top

>dbj|AK101240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031O16, full
            insert sequence
          Length = 1579

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 343  catcaattatgccttcaataagatgagcagagaggctcttcattagtagatactccacat 402
            |||||||||| || || ||||||||| | |||||||||||||| || ||||| |||||||
Sbjct: 1113 catcaattatcccctctataagatgaaccgagaggctcttcataagaagatattccacat 1054

             
Query: 403  c 403
            |
Sbjct: 1053 c 1053

to top

>dbj|AK068605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157F16, full
            insert sequence
          Length = 1661

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 343  catcaattatgccttcaataagatgagcagagaggctcttcattagtagatactccacat 402
            |||||||||| || || ||||||||| | |||||||||||||| || ||||| |||||||
Sbjct: 1108 catcaattatcccctctataagatgaaccgagaggctcttcataagaagatattccacat 1049

             
Query: 403  c 403
            |
Sbjct: 1048 c 1048

to top

>dbj|AK064850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H02, full
            insert sequence
          Length = 1508

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 343  catcaattatgccttcaataagatgagcagagaggctcttcattagtagatactccacat 402
            |||||||||| || || ||||||||| | |||||||||||||| || ||||| |||||||
Sbjct: 1108 catcaattatcccctctataagatgaaccgagaggctcttcataagaagatattccacat 1049

             
Query: 403  c 403
            |
Sbjct: 1048 c 1048

to top

>dbj|AB070262.1| Oryza sativa (japonica cultivar-group) OsRPN9b mRNA for 26S
           proteasome regulatory particle non-ATPase subunit9b,
           partial cds
          Length = 1239

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 343 catcaattatgccttcaataagatgagcagagaggctcttcattagtagatactccacat 402
           |||||||||| || || ||||||||| | |||||||||||||| || ||||| |||||||
Sbjct: 689 catcaattatcccctctataagatgaaccgagaggctcttcataagaagatattccacat 630

            
Query: 403 c 403
           |
Sbjct: 629 c 629

to top

>ref|NM_203160.1| Arabidopsis thaliana unknown protein AT5G45620 transcript variant
            AT5G45620.2 mRNA, complete cds
          Length = 1793

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 207  gtctcggcttcgacagatagcaaagtggtgtg 238
            ||||||||||| |||||||| |||||||||||
Sbjct: 1522 gtctcggcttcaacagatagtaaagtggtgtg 1491

to top

>ref|NM_123930.3| Arabidopsis thaliana unknown protein AT5G45620 transcript variant
            AT5G45620.1 mRNA, complete cds
          Length = 1488

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 207  gtctcggcttcgacagatagcaaagtggtgtg 238
            ||||||||||| |||||||| |||||||||||
Sbjct: 1217 gtctcggcttcaacagatagtaaagtggtgtg 1186

to top

>gb|AY230841.1| Arabidopsis thaliana 26S proteasome subunit RPN9a (RPN9a) mRNA,
            complete cds
          Length = 1315

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 207  gtctcggcttcgacagatagcaaagtggtgtg 238
            ||||||||||| |||||||| |||||||||||
Sbjct: 1139 gtctcggcttcaacagatagtaaagtggtgtg 1108

to top

>gb|AY093136.1| Arabidopsis thaliana 26S proteasome subunit-like protein (At5g45620)
            mRNA, complete cds
          Length = 1438

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 207  gtctcggcttcgacagatagcaaagtggtgtg 238
            ||||||||||| |||||||| |||||||||||
Sbjct: 1228 gtctcggcttcaacagatagtaaagtggtgtg 1197

to top

>emb|BX830748.1|CNS09ZGZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS1ZC12 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1701

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 207  gtctcggcttcgacagatagcaaagtggtgtg 238
            ||||||||||| |||||||| |||||||||||
Sbjct: 1521 gtctcggcttcaacagatagtaaagtggtgtg 1490

to top

>gb|BT003384.1| Arabidopsis thaliana 26S proteasome subunit-like protein (At5g45620)
            mRNA, complete cds
          Length = 1224

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 207  gtctcggcttcgacagatagcaaagtggtgtg 238
            ||||||||||| |||||||| |||||||||||
Sbjct: 1139 gtctcggcttcaacagatagtaaagtggtgtg 1108

to top

>dbj|AB012245.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRA19
          Length = 86722

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 207  gtctcggcttcgacagatagcaaagtggtgtg 238
            ||||||||||| |||||||| |||||||||||
Sbjct: 7892 gtctcggcttcaacagatagtaaagtggtgtg 7861

to top

>emb|BX832332.1|CNS09ZTC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZB10 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1383

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 207  gtctcggcttcgacagatagcaaagtggtgt 237
            ||||||||||| |||||||| ||||||||||
Sbjct: 1181 gtctcggcttcaacagatagtaaagtggtgt 1151

to top

>emb|AL353739.4| Human DNA sequence from clone RP11-19D15 on chromosome 20 Contains STSs
             and GSSs, complete sequence
          Length = 101388

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 111   caaaatcaaatttcaaattcca 132
             ||||||||||||||||||||||
Sbjct: 70490 caaaatcaaatttcaaattcca 70469

to top

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 195     accaggtcgggcgtctcggcttcgac 220
               |||| |||||||||||||||||||||
Sbjct: 1701431 accatgtcgggcgtctcggcttcgac 1701456

to top

>ref|XM_638838.1| Dictyostelium discoideum hypothetical protein (DDB0203305), partial
           mRNA
          Length = 1263

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 108 aatcaaaatcaaatttcaaat 128
           |||||||||||||||||||||
Sbjct: 628 aatcaaaatcaaatttcaaat 648



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 108 aatcaaaatcaaatttcaaat 128
           |||||||||||||||||||||
Sbjct: 610 aatcaaaatcaaatttcaaat 630

to top

>gb|DQ333810.1| Liua shihi mitochondrion, complete genome
          Length = 16376

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 339   accccatcaattatgccttcaataa 363
             ||||||| |||||||||||||||||
Sbjct: 11846 accccattaattatgccttcaataa 11870

to top

>gb|AC122866.4| Mus musculus BAC clone RP23-145J18 from 8, complete sequence
          Length = 200136

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   ccaaagaacatcaagaagcta 195
             |||||||||||||||||||||
Sbjct: 66503 ccaaagaacatcaagaagcta 66523

to top

>gb|AC165355.3| Mus musculus BAC clone RP23-129P10 from chromosome 6, complete sequence
          Length = 199100

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 141   ttgtgtaaggtcacagacacc 161
             |||||||||||||||||||||
Sbjct: 59414 ttgtgtaaggtcacagacacc 59394

to top

>emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f20, COMPLETE SEQUENCE
          Length = 149149

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 108   aatcaaaatcaaatttcaaat 128
             |||||||||||||||||||||
Sbjct: 45207 aatcaaaatcaaatttcaaat 45187

to top

>gb|AC105132.4| Homo sapiens chromosome 15, clone RP11-457H6, complete sequence
          Length = 70309

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   tcaaaatcaaatttcaaattc 130
             |||||||||||||||||||||
Sbjct: 14916 tcaaaatcaaatttcaaattc 14936

to top

>gb|AY593192.1| Liua shihi NADH dehydrogenase subunit 5 (ND5) gene, complete cds;
           mitochondrial
          Length = 1815

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 339 accccatcaattatgccttcaataa 363
           ||||||| |||||||||||||||||
Sbjct: 58  accccattaattatgccttcaataa 82

to top

>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4,
              complete sequence
          Length = 333321

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    aatcaaaatcaaatttcaaat 128
              |||||||||||||||||||||
Sbjct: 187231 aatcaaaatcaaatttcaaat 187251



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    aatcaaaatcaaatttcaaat 128
              |||||||||||||||||||||
Sbjct: 187213 aatcaaaatcaaatttcaaat 187233

to top

>dbj|BS000038.1| Pan troglodytes chromosome 22 clone:PTB-005J02, map 22, complete
              sequences
          Length = 142533

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 110    tcaaaatcaaatttcaaattc 130
              |||||||||||||||||||||
Sbjct: 114542 tcaaaatcaaatttcaaattc 114522

to top

>gb|AC107650.19| Mus musculus chromosome 6, clone RP23-133I9, complete sequence
          Length = 225883

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   ttgtgtaaggtcacagacacc 161
             |||||||||||||||||||||
Sbjct: 58487 ttgtgtaaggtcacagacacc 58507

to top

>emb|BX001012.6| Zebrafish DNA sequence from clone CH211-11C20 in linkage group 4,
              complete sequence
          Length = 158481

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     gcaattgcacatgcagtgaag 34
              |||||||||||||||||||||
Sbjct: 126173 gcaattgcacatgcagtgaag 126193

to top

>dbj|AP001671.1| Homo sapiens genomic DNA, chromosome 21q, section 15/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 110    tcaaaatcaaatttcaaattc 130
              |||||||||||||||||||||
Sbjct: 127513 tcaaaatcaaatttcaaattc 127493

to top

>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 525    tccttctgtaccaaagcaggc 545
              |||||||||||||||||||||
Sbjct: 190723 tccttctgtaccaaagcaggc 190703

to top

>dbj|AP000404.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:T1545,
             LL56-APP region, complete sequence
          Length = 65379

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 110   tcaaaatcaaatttcaaattc 130
             |||||||||||||||||||||
Sbjct: 52300 tcaaaatcaaatttcaaattc 52280

to top

>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
              sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 589    aggatgctagattgccagag 608
              ||||||||||||||||||||
Sbjct: 990224 aggatgctagattgccagag 990243

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 372     gagaggctcttcattagtagatactccacatc 403
               |||||||||||||| || ||||| ||||||||
Sbjct: 5970729 gagaggctcttcataagaagatattccacatc 5970698

to top

>gb|AC146040.2| Pan troglodytes BAC clone RP43-97N16 from 7, complete sequence
          Length = 175808

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 44    aaacaaaacaagactgatctcatg 67
             ||||||||||| ||||||||||||
Sbjct: 62739 aaacaaaacaaaactgatctcatg 62762

to top

>ref|XM_571610.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNF03330) partial mRNA
          Length = 4413

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 589  aggatgctagattgccagag 608
            ||||||||||||||||||||
Sbjct: 3320 aggatgctagattgccagag 3339

to top

>gb|AC006978.2| Homo sapiens BAC clone GS1-66B6 from 7, complete sequence
          Length = 113006

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 44    aaacaaaacaagactgatctcatg 67
             ||||||||||| ||||||||||||
Sbjct: 53490 aaacaaaacaaaactgatctcatg 53467

to top

>ref|XM_503490.1| Yarrowia lipolytica CLIB122, YALI0E03234g predicted mRNA
          Length = 2493

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 504  atcttttcaagaagttccctttccttct 531
            ||||||||||  ||||||||||||||||
Sbjct: 1196 atcttttcaaacagttccctttccttct 1169

to top

>gb|AC104111.2| Homo sapiens chromosome 5 clone RP11-176O14, complete sequence
          Length = 171234

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    aatcaaaatcaaatttcaaa 127
              ||||||||||||||||||||
Sbjct: 101602 aatcaaaatcaaatttcaaa 101621

to top

>gb|AC022360.23| Homo sapiens 8 BAC RP11-58O3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 171991

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   tcaaaatcaaatttcaaatt 129
             ||||||||||||||||||||
Sbjct: 74925 tcaaaatcaaatttcaaatt 74944

to top

>gb|AC025765.6| Homo sapiens chromosome 5 clone CTB-57H20, complete sequence
          Length = 218515

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   caaaatcaaatttcaaattc 130
             ||||||||||||||||||||
Sbjct: 11478 caaaatcaaatttcaaattc 11497

to top

>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02,
              complete sequence
          Length = 128535

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 372    gagaggctcttcattagtagatactccacatc 403
              |||||||||||||| || ||||| ||||||||
Sbjct: 120351 gagaggctcttcataagaagatattccacatc 120320

to top

>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
             complete sequence
          Length = 111961

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 372   gagaggctcttcattagtagatactccacatc 403
             |||||||||||||| || ||||| ||||||||
Sbjct: 29264 gagaggctcttcataagaagatattccacatc 29233

to top

>gb|AC016925.15|AC016925 Homo sapiens X BAC RP11-434J4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 133615

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   caaaatcaaatttcaaattc 130
             ||||||||||||||||||||
Sbjct: 44722 caaaatcaaatttcaaattc 44703

to top

>emb|AL116163.1|CNS01CYZ Botrytis cinerea strain T4 cDNA library
          Length = 696

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 498 acattgatcttttcaagaag 517
           ||||||||||||||||||||
Sbjct: 219 acattgatcttttcaagaag 238

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 372     gagaggctcttcattagtagatactccacatc 403
               |||||||||||||| || ||||| ||||||||
Sbjct: 5969942 gagaggctcttcataagaagatattccacatc 5969911

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 372      gagaggctcttcattagtagatactccacatc 403
                |||||||||||||| || ||||| ||||||||
Sbjct: 17996725 gagaggctcttcataagaagatattccacatc 17996756

to top

>gb|AC009916.5|AC009916 Drosophila melanogaster, chromosome 3R, region 96A-96A, BAC clone
             BACR35N03, complete sequence
          Length = 169271

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   agaatcaaaatcaaatttca 125
             ||||||||||||||||||||
Sbjct: 60294 agaatcaaaatcaaatttca 60313

to top

>gb|AC017040.7| Homo sapiens BAC clone RP11-319B20 from 2, complete sequence
          Length = 178446

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    caaaatcaaatttcaaattc 130
              ||||||||||||||||||||
Sbjct: 150969 caaaatcaaatttcaaattc 150950

to top

>gb|AC016712.6| Homo sapiens BAC clone RP11-266F17 from 2, complete sequence
          Length = 159748

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   caaaatcaaatttcaaattc 130
             ||||||||||||||||||||
Sbjct: 48312 caaaatcaaatttcaaattc 48331

to top

>gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, complete sequence
          Length = 198167

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    caaaatcaaatttcaaattc 130
              ||||||||||||||||||||
Sbjct: 155336 caaaatcaaatttcaaattc 155355

to top

>gb|AC078929.27| Homo sapiens 12 BAC RP11-797M17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 107895

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   ttgtgcggtcttgagatgct 467
             ||||||||||||||||||||
Sbjct: 92175 ttgtgcggtcttgagatgct 92156

to top

>gb|AC091619.3| Papio anubis clone RP41-139B7, complete sequence
          Length = 181302

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 44     aaacaaaacaagactgatctcatg 67
              ||||||||||| ||||||||||||
Sbjct: 119467 aaacaaaacaaaactgatctcatg 119444

to top

>dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0054L14
          Length = 150022

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 372   gagaggctcttcattagtagatactccacatc 403
             |||||||||||||| || ||||| ||||||||
Sbjct: 23966 gagaggctcttcataagaagatattccacatc 23997

to top

>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0520B06
          Length = 142667

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 372    gagaggctcttcattagtagatactccacatc 403
              |||||||||||||| || ||||| ||||||||
Sbjct: 116560 gagaggctcttcataagaagatattccacatc 116591

to top

>gb|AC008407.4|AC008407 Homo sapiens chromosome 5 clone CTC-278A2, complete sequence
          Length = 78849

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   caaaatcaaatttcaaattc 130
             ||||||||||||||||||||
Sbjct: 65966 caaaatcaaatttcaaattc 65985

to top

>gb|AE003748.3| Drosophila melanogaster chromosome 3R, section 86 of 118 of the complete
              sequence
          Length = 253272

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    agaatcaaaatcaaatttca 125
              ||||||||||||||||||||
Sbjct: 225784 agaatcaaaatcaaatttca 225765

to top

>dbj|AP000808.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-757G1, complete
             sequence
          Length = 175883

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   caaaatcaaatttcaaattc 130
             ||||||||||||||||||||
Sbjct: 46147 caaaatcaaatttcaaattc 46128

to top

>dbj|AP003732.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-682D22, complete
              sequence
          Length = 193132

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    caaaatcaaatttcaaattc 130
              ||||||||||||||||||||
Sbjct: 140533 caaaatcaaatttcaaattc 140514

to top

>emb|AL121944.14|HSDJ313I6 Human DNA sequence from clone RP1-313I6 on chromosome 6 Contains a
              KIAA0036 pseudogene, olfactory receptor 2W2, 2B7, 2B8 and
              1F12 pseudogenes (OR2W2P, OR2B7P, OR2B8 and OR1F12), the
              ZNF165 gene for zinc finger protein 165, two zinc finger
              protein pseudogenes, ESTs, STSs, GSSs and two CpG islands,
              complete sequence
          Length = 130279

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    caaaatcaaatttcaaattc 130
              ||||||||||||||||||||
Sbjct: 122505 caaaatcaaatttcaaattc 122524

to top

>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia
              lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 504    atcttttcaagaagttccctttccttct 531
              ||||||||||  ||||||||||||||||
Sbjct: 353799 atcttttcaaacagttccctttccttct 353826

to top

>dbj|AP006375.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT32M04, TM0219,
             complete sequence
          Length = 72880

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   atcaaaatcaaatttcaaat 128
             ||||||||||||||||||||
Sbjct: 23250 atcaaaatcaaatttcaaat 23269


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,626,522
Number of Sequences: 3902068
Number of extensions: 6626522
Number of successful extensions: 124846
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124535
Number of HSP's gapped (non-prelim): 311
length of query: 688
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 665
effective length of database: 17,143,297,704
effective search space: 11400292973160
effective search space used: 11400292973160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result