Clone Name | rbasd13n04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_506746.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1225_F07.15 mRNA Length = 1000 Score = 260 bits (131), Expect = 5e-66 Identities = 158/167 (94%) Strand = Plus / Minus Query: 359 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 418 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 619 Query: 419 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaacagtac 478 ||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||| Sbjct: 618 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcggtgcaacgcacagtac 559 Query: 479 atgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 ||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 558 atgttaccgcaccggcagttgaatcccgtcagcccaaccctcttcct 512 Score = 73.8 bits (37), Expect = 6e-10 Identities = 200/248 (80%), Gaps = 16/248 (6%) Strand = Plus / Minus Query: 39 gatgaaccattgctggttactattactgatcagaatttaacacacatgggacaatagtac 98 |||| |||||||||| | |||||||||||| ||| || || ||||||||| |||||| Sbjct: 1000 gatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca-tagtac 942 Query: 99 ataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccaccatgaata 158 || | |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| Sbjct: 941 atca-cagagctagctaaa-tgagacaccacaatactgaccgaaaa--ccaccaagaata 886 Query: 159 aag-ttacacaa---------cacgcaaaccattcggaatgactgagaggattgagttct 208 ||| |||||||| ||||||||||| | | ||||||||||||| || |||| Sbjct: 885 aagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat-gaattct 827 Query: 209 tgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgtggcagcc 268 | | ||||||| || |||||||||||||| | | | |||||||| ||||||| |||||| Sbjct: 826 ttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgtagcagcc 767 Query: 269 aacaagaa 276 ||||||| Sbjct: 766 gacaagaa 759
>ref|XM_464458.1| Oryza sativa (japonica cultivar-group), mRNA Length = 991 Score = 260 bits (131), Expect = 5e-66 Identities = 158/167 (94%) Strand = Plus / Minus Query: 359 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 418 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 602 Query: 419 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaacagtac 478 ||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||| Sbjct: 601 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcggtgcaacgcacagtac 542 Query: 479 atgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 ||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 541 atgttaccgcaccggcagttgaatcccgtcagcccaaccctcttcct 495 Score = 87.7 bits (44), Expect = 4e-14 Identities = 207/255 (81%), Gaps = 16/255 (6%) Strand = Plus / Minus Query: 32 gcaatatgatgaaccattgctggttactattactgatcagaatttaacacacatgggaca 91 ||||||||||| |||||||||| | |||||||||||| ||| || || ||||||||| Sbjct: 990 gcaatatgatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca 931 Query: 92 atagtacataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccacc 151 |||||||| | |||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct: 930 -tagtacatca-cagagctagctaaa-tgagacaccacaatactgaccgaaaa--ccacc 876 Query: 152 atgaataaag-ttacacaa---------cacgcaaaccattcggaatgactgagaggatt 201 | |||||||| |||||||| ||||||||||| | | ||||||||||||| Sbjct: 875 aagaataaagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat- 817 Query: 202 gagttcttgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgt 261 || ||||| | ||||||| || |||||||||||||| | | | |||||||| ||||||| Sbjct: 816 gaattctttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgt 757 Query: 262 ggcagccaacaagaa 276 |||||| ||||||| Sbjct: 756 agcagccgacaagaa 742
>dbj|AK061911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A06, full insert sequence Length = 991 Score = 260 bits (131), Expect = 5e-66 Identities = 158/167 (94%) Strand = Plus / Minus Query: 359 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 418 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 602 Query: 419 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaacagtac 478 ||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||| Sbjct: 601 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcggtgcaacgcacagtac 542 Query: 479 atgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 ||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 541 atgttaccgcaccggcagttgaatcccgtcagcccaaccctcttcct 495 Score = 79.8 bits (40), Expect = 1e-11 Identities = 206/255 (80%), Gaps = 16/255 (6%) Strand = Plus / Minus Query: 32 gcaatatgatgaaccattgctggttactattactgatcagaatttaacacacatgggaca 91 ||||||||||| |||||||||| | |||||||||||| ||| || || ||||||||| Sbjct: 990 gcaatatgatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca 931 Query: 92 atagtacataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccacc 151 |||||||| | |||||||||| ||| ||||| ||||||||||||||||||| ||||| Sbjct: 930 -tagtacatca-cagagctagccaaa-tgagacaccacaatactgaccgaaaa--ccacc 876 Query: 152 atgaataaag-ttacacaa---------cacgcaaaccattcggaatgactgagaggatt 201 | |||||||| |||||||| ||||||||||| | | ||||||||||||| Sbjct: 875 aagaataaagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat- 817 Query: 202 gagttcttgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgt 261 || ||||| | ||||||| || |||||||||||||| | | | |||||||| ||||||| Sbjct: 816 gaattctttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgt 757 Query: 262 ggcagccaacaagaa 276 |||||| ||||||| Sbjct: 756 agcagccgacaagaa 742
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 260 bits (131), Expect = 5e-66 Identities = 158/167 (94%) Strand = Plus / Plus Query: 359 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 418 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 5346040 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 5346099 Query: 419 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaacagtac 478 ||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||| Sbjct: 5346100 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcggtgcaacgcacagtac 5346159 Query: 479 atgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 ||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 5346160 atgttaccgcaccggcagttgaatcccgtcagcccaaccctcttcct 5346206 Score = 87.7 bits (44), Expect = 4e-14 Identities = 207/255 (81%), Gaps = 16/255 (6%) Strand = Plus / Plus Query: 32 gcaatatgatgaaccattgctggttactattactgatcagaatttaacacacatgggaca 91 ||||||||||| |||||||||| | |||||||||||| ||| || || ||||||||| Sbjct: 5345711 gcaatatgatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca 5345770 Query: 92 atagtacataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccacc 151 |||||||| | |||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct: 5345771 -tagtacatca-cagagctagctaaa-tgagacaccacaatactgaccgaaaa--ccacc 5345825 Query: 152 atgaataaag-ttacacaa---------cacgcaaaccattcggaatgactgagaggatt 201 | |||||||| |||||||| ||||||||||| | | ||||||||||||| Sbjct: 5345826 aagaataaagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat- 5345884 Query: 202 gagttcttgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgt 261 || ||||| | ||||||| || |||||||||||||| | | | |||||||| ||||||| Sbjct: 5345885 gaattctttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgt 5345944 Query: 262 ggcagccaacaagaa 276 |||||| ||||||| Sbjct: 5345945 agcagccgacaagaa 5345959
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 260 bits (131), Expect = 5e-66 Identities = 158/167 (94%) Strand = Plus / Plus Query: 359 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 418 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 72343 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 72402 Query: 419 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaacagtac 478 ||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||| Sbjct: 72403 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcggtgcaacgcacagtac 72462 Query: 479 atgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 ||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 72463 atgttaccgcaccggcagttgaatcccgtcagcccaaccctcttcct 72509 Score = 87.7 bits (44), Expect = 4e-14 Identities = 207/255 (81%), Gaps = 16/255 (6%) Strand = Plus / Plus Query: 32 gcaatatgatgaaccattgctggttactattactgatcagaatttaacacacatgggaca 91 ||||||||||| |||||||||| | |||||||||||| ||| || || ||||||||| Sbjct: 72014 gcaatatgatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca 72073 Query: 92 atagtacataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccacc 151 |||||||| | |||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct: 72074 -tagtacatca-cagagctagctaaa-tgagacaccacaatactgaccgaaaa--ccacc 72128 Query: 152 atgaataaag-ttacacaa---------cacgcaaaccattcggaatgactgagaggatt 201 | |||||||| |||||||| ||||||||||| | | ||||||||||||| Sbjct: 72129 aagaataaagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat- 72187 Query: 202 gagttcttgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgt 261 || ||||| | ||||||| || |||||||||||||| | | | |||||||| ||||||| Sbjct: 72188 gaattctttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgt 72247 Query: 262 ggcagccaacaagaa 276 |||||| ||||||| Sbjct: 72248 agcagccgacaagaa 72262
>dbj|AK067403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106E09, full insert sequence Length = 1000 Score = 260 bits (131), Expect = 5e-66 Identities = 158/167 (94%) Strand = Plus / Minus Query: 359 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 418 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 atcttgtcgagcttctcagccttcaccactgggttggccttggcgatggcatccctagcc 619 Query: 419 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaacagtac 478 ||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||| Sbjct: 618 gcagtccggtagtcgaactggcattcatgcttgtcggagtagcggtgcaacgcacagtac 559 Query: 479 atgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 ||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 558 atgttaccgcaccggcagttgaatcccgtcagcccaaccctcttcct 512 Score = 73.8 bits (37), Expect = 6e-10 Identities = 200/248 (80%), Gaps = 16/248 (6%) Strand = Plus / Minus Query: 39 gatgaaccattgctggttactattactgatcagaatttaacacacatgggacaatagtac 98 |||| |||||||||| | |||||||||||| ||| || || ||||||||| |||||| Sbjct: 1000 gatggaccattgctgataactattactgattgaaatgtagcaagcatgggaca-tagtac 942 Query: 99 ataaacagagctagctaaaatgagaagccacaatactgaccgaaaaaaccaccatgaata 158 || | |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| Sbjct: 941 atca-cagagctagctaaa-tgagacaccacaatactgaccgaaaa--ccaccaagaata 886 Query: 159 aag-ttacacaa---------cacgcaaaccattcggaatgactgagaggattgagttct 208 ||| |||||||| ||||||||||| | | ||||||||||||| || |||| Sbjct: 885 aagattacacaacatacccaacacgcaaaccacttgacttgactgagaggat-gaattct 827 Query: 209 tgcagctgccacgacgcagtgtgcatcacgatgccgtacaatttaggaaatgtggcagcc 268 | | ||||||| || |||||||||||||| | | | |||||||| ||||||| |||||| Sbjct: 826 ttcggctgccaggatgcagtgtgcatcacaaagttgaacaatttaagaaatgtagcagcc 767 Query: 269 aacaagaa 276 ||||||| Sbjct: 766 gacaagaa 759
>gb|BT016379.1| Zea mays clone Contig212 mRNA sequence Length = 1020 Score = 174 bits (88), Expect = 2e-40 Identities = 151/172 (87%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 |||| |||||||||||||| |||||||||||||| || || |||||||| ||||| |||| Sbjct: 632 cctagatcttgtcgagcttgtctgccttcaccaccggattagccttggcaatggcgtccc 573 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 | || ||||||||||||||||||| |||||| ||||||||||| |||||||| |||| | Sbjct: 572 tggcagcagtccggtagtcgaacttgcagtcgtgcttgtcggagtagcggtggagcgcgc 513 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 |||||| ||| || || | ||||||||||||||| ||||||||||||||||| Sbjct: 512 agtacaagttcccacaccggcagttgaatcccgtgagcccaaccctcttcct 461
>gb|BT019326.1| Zea mays clone Contig1045.F mRNA sequence Length = 779 Score = 172 bits (87), Expect = 9e-40 Identities = 147/167 (88%) Strand = Plus / Minus Query: 359 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 418 ||||||||||||||||| ||| ||||||| || ||||||||||| || || ||||| ||| Sbjct: 289 atcttgtcgagcttctccgccctcaccacaggattggccttggcaatcgcgtcccttgct 230 Query: 419 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaacagtac 478 |||||||| ||||||||||| |||||||| |||||||| |||||||||| |||||||||| Sbjct: 229 gcagtccgatagtcgaactgacagtcatgtttgtcggagtagcggtgcaccgaacagtac 170 Query: 479 atgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 ||||| ||||||| |||| | |||||||| |||||||| | |||||| Sbjct: 169 atgttcccgcatcggcagctaaatcccgtcagcccaacacgcttcct 123
>gb|AY109331.1| Zea mays CL253_2 mRNA sequence Length = 2256 Score = 172 bits (87), Expect = 9e-40 Identities = 147/167 (88%) Strand = Plus / Minus Query: 359 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 418 |||||||||||||| |||||||||||||| || || |||||||| ||||| ||||| || Sbjct: 1607 atcttgtcgagcttgtctgccttcaccaccggattagccttggcaatggcgtccctggca 1548 Query: 419 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaacagtac 478 ||||||||||||||||||| |||||| ||||||||||| |||||||| |||| |||||| Sbjct: 1547 gcagtccggtagtcgaacttgcagtcgtgcttgtcggagtagcggtggagcgcgcagtac 1488 Query: 479 atgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 | ||| || || | ||||||||||||||| ||||||||||||||||| Sbjct: 1487 aagttcccacaccggcagttgaatcccgtgagcccaaccctcttcct 1441
>gb|AY105966.1| Zea mays PCO143261 mRNA sequence Length = 1035 Score = 172 bits (87), Expect = 9e-40 Identities = 147/167 (88%) Strand = Plus / Minus Query: 359 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 418 ||||||||||||||||| ||| ||||||| || ||||||||||| || || ||||| ||| Sbjct: 601 atcttgtcgagcttctccgccctcaccacaggattggccttggcaatcgcgtcccttgct 542 Query: 419 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaacagtac 478 |||||||| ||||||||||| |||||||| |||||||| |||||||||| |||||||||| Sbjct: 541 gcagtccgatagtcgaactgacagtcatgtttgtcggagtagcggtgcaccgaacagtac 482 Query: 479 atgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 ||||| ||||||| |||| | |||||||| |||||||| | |||||| Sbjct: 481 atgttcccgcatcggcagctaaatcccgtcagcccaacacgcttcct 435
>gb|AY105867.1| Zea mays PCO143262 mRNA sequence Length = 984 Score = 172 bits (87), Expect = 9e-40 Identities = 147/167 (88%) Strand = Plus / Minus Query: 359 atcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccctagct 418 |||||||| |||||||| |||||||||||||| |||||||||||||| || ||||||||| Sbjct: 600 atcttgtcaagcttctccgccttcaccactggattggccttggcgatagcgtccctagct 541 Query: 419 gcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaacagtac 478 ||||| || ||||||||||||||||| || |||||||| |||||||||| |||||||||| Sbjct: 540 gcagttcgatagtcgaactggcagtcgtgtttgtcggagtagcggtgcatcgaacagtac 481 Query: 479 atgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 |||| ||||||| |||||| || ||||| | |||||| | |||||| Sbjct: 480 gtgttcccgcatcggcagttaaaacccgtcaacccaacacgcttcct 434 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 205 ttcttgcagctgccacgacgcagtgtgcatca 236 ||||||||||||||| || || |||||||||| Sbjct: 759 ttcttgcagctgccaggatgctgtgtgcatca 728
>gb|AY787873.1| Zea mays zinc finger protein (znf1) mRNA, complete cds Length = 1000 Score = 159 bits (80), Expect = 1e-35 Identities = 149/172 (86%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 |||| |||||||||||||| |||||||||||||| || || |||||||| ||||| |||| Sbjct: 616 cctagatcttgtcgagcttgtctgccttcaccaccggattagccttggcaatggcgtccc 557 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 | || ||||||||||||||||||| |||||| ||||||||||| |||||||| || | | Sbjct: 556 tggcagcagtccggtagtcgaacttgcagtcgtgcttgtcggagtagcggtggagtgcgc 497 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 |||||| ||| || || | ||||||||||||||| || |||||||||||||| Sbjct: 496 agtacaagttcccacaccggcagttgaatcccgtaagtccaaccctcttcct 445
>gb|BT017601.1| Zea mays clone EL01N0431H03.c mRNA sequence Length = 941 Score = 159 bits (80), Expect = 1e-35 Identities = 149/172 (86%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 |||| |||||| ||||||| |||||||||||||| || || |||||||| ||||| |||| Sbjct: 638 cctagatcttggcgagcttgtctgccttcaccaccggattagccttggcaatggcgtccc 579 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 | || ||||||||||||||||||| |||||| ||||||||||| || ||||| |||| | Sbjct: 578 tggcagcagtccggtagtcgaacttgcagtcgtgcttgtcggagtaccggtggagcgccc 519 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 |||||| ||| || || | ||||||||||||||| ||||||||||||||||| Sbjct: 518 agtacaagttcccacaccggcagttgaatcccgtgagcccaaccctcttcct 467
>gb|AY515607.1| Zea mays putative zinc finger protein ZmZf mRNA, complete cds Length = 1162 Score = 151 bits (76), Expect = 3e-33 Identities = 148/172 (86%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 |||| |||||||||||||| |||||||||||||| || || |||||||| ||||| |||| Sbjct: 808 cctagatcttgtcgagcttgtctgccttcaccaccggattagccttggcaatggcgtccc 749 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 | || ||||||||||||||||||| |||||| ||||||||||| |||||||| || | | Sbjct: 748 tggcagcagtccggtagtcgaacttgcagtcgtgcttgtcggagtagcggtggagtgcgc 689 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttcct 525 |||||| ||| || || | ||||||||||||||| || |||||||| ||||| Sbjct: 688 agtacaagttcccacaccggcagttgaatcccgtaagtccaacccttttcct 637
>gb|AY345599.2| Oryza sativa (indica cultivar-group) stress-associated protein-3 (SAP-3) mRNA, complete cds Length = 1132 Score = 147 bits (74), Expect = 5e-32 Identities = 183/218 (83%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 577 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 518 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 |||| || ||||| ||||| ||||||||||||||||| |||||||||||||||| | | Sbjct: 517 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgcattgcgc 458 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttccttgcaagtt 533 |||||| ||| || |||| |||||||||||| || || ||||||||||||| ||||| Sbjct: 457 agtacaagttgccacatcggcagttgaatccggtaagaccaaccctcttcc-gacaagtg 399 Query: 534 gagcaccgattcggcccctccttcctcttggggctcac 571 ||||||||||| || || ||| ||| ||||||| |||| Sbjct: 398 gagcaccgatttggtccttccctccccttggggttcac 361 Score = 44.1 bits (22), Expect = 0.54 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 89 acaatagtacataaacagagctagctaaaatgagaagccacaatac 134 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 853 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 810 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 639 cagcaaagatggatgatgaa 620
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 147 bits (74), Expect = 5e-32 Identities = 183/218 (83%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 24109922 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 24109863 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 |||| || ||||| ||||| ||||||||||||||||| |||||||||||||||| | | Sbjct: 24109862 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgcattgcgc 24109803 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttccttgcaagtt 533 |||||| ||| || |||| |||||||||||| || || ||||||||||||| ||||| Sbjct: 24109802 agtacaagttgccacatcggcagttgaatccggtaagaccaaccctcttcc-gacaagtg 24109744 Query: 534 gagcaccgattcggcccctccttcctcttggggctcac 571 ||||||||||| || || ||| ||| ||||||| |||| Sbjct: 24109743 gagcaccgatttggtccttccctccccttggggttcac 24109706 Score = 44.1 bits (22), Expect = 0.54 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 89 acaatagtacataaacagagctagctaaaatgagaagccacaatac 134 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 24110198 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 24110155 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 24109984 cagcaaagatggatgatgaa 24109965
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 147 bits (74), Expect = 5e-32 Identities = 183/218 (83%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 43380 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 43321 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 |||| || ||||| ||||| ||||||||||||||||| |||||||||||||||| | | Sbjct: 43320 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgcattgcgc 43261 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttccttgcaagtt 533 |||||| ||| || |||| |||||||||||| || || ||||||||||||| ||||| Sbjct: 43260 agtacaagttgccacatcggcagttgaatccggtaagaccaaccctcttcc-gacaagtg 43202 Query: 534 gagcaccgattcggcccctccttcctcttggggctcac 571 ||||||||||| || || ||| ||| ||||||| |||| Sbjct: 43201 gagcaccgatttggtccttccctccccttggggttcac 43164 Score = 44.1 bits (22), Expect = 0.54 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 89 acaatagtacataaacagagctagctaaaatgagaagccacaatac 134 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 43656 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 43613 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 43442 cagcaaagatggatgatgaa 43423
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 147 bits (74), Expect = 5e-32 Identities = 183/218 (83%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 119615 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 119556 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 |||| || ||||| ||||| ||||||||||||||||| |||||||||||||||| | | Sbjct: 119555 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgcattgcgc 119496 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttccttgcaagtt 533 |||||| ||| || |||| |||||||||||| || || ||||||||||||| ||||| Sbjct: 119495 agtacaagttgccacatcggcagttgaatccggtaagaccaaccctcttcc-gacaagtg 119437 Query: 534 gagcaccgattcggcccctccttcctcttggggctcac 571 ||||||||||| || || ||| ||| ||||||| |||| Sbjct: 119436 gagcaccgatttggtccttccctccccttggggttcac 119399 Score = 44.1 bits (22), Expect = 0.54 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 89 acaatagtacataaacagagctagctaaaatgagaagccacaatac 134 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 119891 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 119848 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 119677 cagcaaagatggatgatgaa 119658
>dbj|AK104562.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D03, full insert sequence Length = 999 Score = 147 bits (74), Expect = 5e-32 Identities = 183/218 (83%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 666 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 607 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 |||| || ||||| ||||| ||||||||||||||||| |||||||||||||||| | | Sbjct: 606 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgcattgcgc 547 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttccttgcaagtt 533 |||||| ||| || |||| |||||||||||| || || ||||||||||||| ||||| Sbjct: 546 agtacaagttgccacatcggcagttgaatccggtaagaccaaccctcttcc-gacaagtg 488 Query: 534 gagcaccgattcggcccctccttcctcttggggctcac 571 ||||||||||| || || ||| ||| ||||||| |||| Sbjct: 487 gagcaccgatttggtccttccctccccttggggttcac 450 Score = 44.1 bits (22), Expect = 0.54 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 89 acaatagtacataaacagagctagctaaaatgagaagccacaatac 134 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 942 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 899 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 728 cagcaaagatggatgatgaa 709
>dbj|AK104605.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A12, full insert sequence Length = 1009 Score = 147 bits (74), Expect = 5e-32 Identities = 183/218 (83%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 666 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 607 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 |||| || ||||| ||||| ||||||||||||||||| |||||||||||||||| | | Sbjct: 606 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgcattgcgc 547 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttccttgcaagtt 533 |||||| ||| || |||| |||||||||||| || || ||||||||||||| ||||| Sbjct: 546 agtacaagttgccacatcggcagttgaatccggtaagaccaaccctcttcc-gacaagtg 488 Query: 534 gagcaccgattcggcccctccttcctcttggggctcac 571 ||||||||||| || || ||| ||| ||||||| |||| Sbjct: 487 gagcaccgatttggtccttccctccccttggggttcac 450 Score = 44.1 bits (22), Expect = 0.54 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 89 acaatagtacataaacagagctagctaaaatgagaagccacaatac 134 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 942 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 899 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 728 cagcaaagatggatgatgaa 709
>dbj|AK104175.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C11, full insert sequence Length = 1000 Score = 147 bits (74), Expect = 5e-32 Identities = 183/218 (83%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 667 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 608 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 |||| || ||||| ||||| ||||||||||||||||| |||||||||||||||| | | Sbjct: 607 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgcattgcgc 548 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttccttgcaagtt 533 |||||| ||| || |||| |||||||||||| || || ||||||||||||| ||||| Sbjct: 547 agtacaagttgccacatcggcagttgaatccggtaagaccaaccctcttcc-gacaagtg 489 Query: 534 gagcaccgattcggcccctccttcctcttggggctcac 571 ||||||||||| || || ||| ||| ||||||| |||| Sbjct: 488 gagcaccgatttggtccttccctccccttggggttcac 451 Score = 44.1 bits (22), Expect = 0.54 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 89 acaatagtacataaacagagctagctaaaatgagaagccacaatac 134 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 943 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 900 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 729 cagcaaagatggatgatgaa 710
>dbj|AK069720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026K20, full insert sequence Length = 1209 Score = 147 bits (74), Expect = 5e-32 Identities = 183/218 (83%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 664 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 605 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 |||| || ||||| ||||| ||||||||||||||||| |||||||||||||||| | | Sbjct: 604 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgcattgcgc 545 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttccttgcaagtt 533 |||||| ||| || |||| |||||||||||| || || ||||||||||||| ||||| Sbjct: 544 agtacaagttgccacatcggcagttgaatccggtaagaccaaccctcttcc-gacaagtg 486 Query: 534 gagcaccgattcggcccctccttcctcttggggctcac 571 ||||||||||| || || ||| ||| ||||||| |||| Sbjct: 485 gagcaccgatttggtccttccctccccttggggttcac 448 Score = 44.1 bits (22), Expect = 0.54 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 89 acaatagtacataaacagagctagctaaaatgagaagccacaatac 134 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 940 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 897 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 726 cagcaaagatggatgatgaa 707
>dbj|AK062342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F03, full insert sequence Length = 631 Score = 147 bits (74), Expect = 5e-32 Identities = 183/218 (83%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 305 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 246 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 |||| || ||||| ||||| ||||||||||||||||| |||||||||||||||| | | Sbjct: 245 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgcattgcgc 186 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttccttgcaagtt 533 |||||| ||| || |||| |||||||||||| || || ||||||||||||| ||||| Sbjct: 185 agtacaagttgccacatcggcagttgaatccggtaagaccaaccctcttcc-gacaagtg 127 Query: 534 gagcaccgattcggcccctccttcctcttggggctcac 571 ||||||||||| || || ||| ||| ||||||| |||| Sbjct: 126 gagcaccgatttggtccttccctccccttggggttcac 89 Score = 44.1 bits (22), Expect = 0.54 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 89 acaatagtacataaacagagctagctaaaatgagaagccacaatac 134 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 581 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 538 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 367 cagcaaagatggatgatgaa 348
>dbj|AK060008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C08, full insert sequence Length = 1021 Score = 147 bits (74), Expect = 5e-32 Identities = 183/218 (83%), Gaps = 1/218 (0%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 663 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 604 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgcagcgaac 473 |||| || ||||| ||||| ||||||||||||||||| |||||||||||||||| | | Sbjct: 603 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgcattgcgc 544 Query: 474 agtacatgttaccgcatctgcagttgaatcccgttagcccaaccctcttccttgcaagtt 533 |||||| ||| || |||| |||||||||||| || || ||||||||||||| ||||| Sbjct: 543 agtacaagttgccacatcggcagttgaatccggtaagaccaaccctcttcc-gacaagtg 485 Query: 534 gagcaccgattcggcccctccttcctcttggggctcac 571 ||||||||||| || || ||| ||| ||||||| |||| Sbjct: 484 gagcaccgatttggtccttccctccccttggggttcac 447 Score = 44.1 bits (22), Expect = 0.54 Identities = 42/46 (91%), Gaps = 2/46 (4%) Strand = Plus / Minus Query: 89 acaatagtacataaacagagctagctaaaatgagaagccacaatac 134 |||||||||||| | ||||||||||| ||||| ||||||||||||| Sbjct: 939 acaatagtacatta-cagagctagct-aaatgcgaagccacaatac 896 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 725 cagcaaagatggatgatgaa 706
>gb|DQ083231.1| Oryza sativa (indica cultivar-group) clone 5B6A82 mRNA sequence Length = 391 Score = 113 bits (57), Expect = 7e-22 Identities = 99/113 (87%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 123 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 64 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgc 466 |||| || ||||| ||||| ||||||||||||||||| ||||||||||||||| Sbjct: 63 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgc 11 Score = 40.1 bits (20), Expect = 8.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 103 acagagctagctaaaatgagaagccacaatac 134 |||||||||||| ||||| ||||||||||||| Sbjct: 386 acagagctagct-aaatgcgaagccacaatac 356 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 185 cagcaaagatggatgatgaa 166
>gb|DQ083227.1| Oryza sativa (indica cultivar-group) clone 2B5A77 mRNA sequence Length = 391 Score = 113 bits (57), Expect = 7e-22 Identities = 99/113 (87%) Strand = Plus / Minus Query: 354 cctaaatcttgtcgagcttctctgccttcaccactgggttggccttggcgatggcatccc 413 ||||||| ||||| || ||||| ||||||||||| || || |||||||| || ||||||| Sbjct: 123 cctaaattttgtcaagtttctccgccttcaccaccggattagccttggcaatagcatccc 64 Query: 414 tagctgcagtccggtagtcgaactggcagtcatgcttgtcggaatagcggtgc 466 |||| || ||||| ||||| ||||||||||||||||| ||||||||||||||| Sbjct: 63 tagcagcggtccgatagtcaaactggcagtcatgcttatcggaatagcggtgc 11 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cagcaaagatggatgatgaa 316 |||||||||||||||||||| Sbjct: 185 cagcaaagatggatgatgaa 166
>gb|DQ083230.1| Oryza sativa (indica cultivar-group) clone 3B12G81 mRNA sequence Length = 449 Score = 48.1 bits (24), Expect = 0.035 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 488 catctgcagttgaatcccgttagcccaaccctcttccttgcaagttgagcaccgattcgg 547 |||| |||||||||||| || || ||||||||||||| ||||| ||||||||||| || Sbjct: 438 catcggcagttgaatccggtaagaccaaccctcttcc-gacaagtggagcaccgatttgg 380 Query: 548 cccctccttcctcttggggctcac 571 || ||| ||| ||||||| |||| Sbjct: 379 tccttccctccccttggggttcac 356
>gb|AC108806.10| Mus musculus chromosome 14, clone RP23-246G7, complete sequence Length = 189619 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 actattactgatcagaattta 77 ||||||||||||||||||||| Sbjct: 65007 actattactgatcagaattta 65027
>gb|AC104797.3| Homo sapiens BAC clone RP11-327I3 from 4, complete sequence Length = 57338 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 cttggcagattgcaaccattt 338 ||||||||||||||||||||| Sbjct: 56838 cttggcagattgcaaccattt 56858
>gb|AC097514.3| Homo sapiens BAC clone RP11-425J20 from 4, complete sequence Length = 177027 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 cttggcagattgcaaccattt 338 ||||||||||||||||||||| Sbjct: 1500 cttggcagattgcaaccattt 1520
>gb|AC011345.5| Homo sapiens chromosome 5 clone CTC-293E5, complete sequence Length = 105797 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 aatactgaccgaaaaaaccac 150 ||||||||||||||||||||| Sbjct: 63131 aatactgaccgaaaaaaccac 63151
>emb|CT025686.7| Mouse DNA sequence from clone RP24-273I13 on chromosome 14, complete sequence Length = 186233 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 actattactgatcagaattta 77 ||||||||||||||||||||| Sbjct: 102056 actattactgatcagaattta 102036
>ref|NM_196306.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0068A07.18), mRNA Length = 1116 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 596 aacatcagcagcaggctgca 615 |||||||||||||||||||| Sbjct: 218 aacatcagcagcaggctgca 199
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 591 cctgcaacatcagcagcagg 610 |||||||||||||||||||| Sbjct: 1739744 cctgcaacatcagcagcagg 1739763
>gb|AC133006.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0072N24 map C61883S, complete sequence Length = 163337 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 caacatcagcagcaggctgc 614 |||||||||||||||||||| Sbjct: 141664 caacatcagcagcaggctgc 141645
>gb|AC091527.21| Trypanosoma brucei chromosome 7 clone RPCI93-33N13, complete sequence Length = 114057 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 591 cctgcaacatcagcagcagg 610 |||||||||||||||||||| Sbjct: 60801 cctgcaacatcagcagcagg 60820
>gb|AC091677.12| Mus musculus chromosome 18, clone RP23-131E5, complete sequence Length = 222121 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 gatggcatccctagctgcag 422 |||||||||||||||||||| Sbjct: 181645 gatggcatccctagctgcag 181626
>ref|XM_821159.1| Trypanosoma brucei TREU927 clone RPCI93-33N13 hypothetical protein (Tb927.7.6410) partial mRNA Length = 4371 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 cctgcaacatcagcagcagg 610 |||||||||||||||||||| Sbjct: 1963 cctgcaacatcagcagcagg 1944
>ref|XM_444959.1| Candida glabrata CBS138 hypothetical protein (CAGL0A04411g) partial mRNA Length = 1968 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 gcaaagatggatgatgaacc 318 |||||||||||||||||||| Sbjct: 1567 gcaaagatggatgatgaacc 1586
>gb|AC133002.6| Oryza sativa chromosome 11 BAC OJ1123_D06 genomic sequence, complete sequence Length = 88378 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 caacatcagcagcaggctgc 614 |||||||||||||||||||| Sbjct: 10475 caacatcagcagcaggctgc 10456
>gb|AC010091.2| Homo sapiens BAC clone RP11-295A1 from 7, complete sequence Length = 56864 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 104 cagagctagctaaaatgagaagccacaa 131 |||||||||||||||| |||| |||||| Sbjct: 28635 cagagctagctaaaatcagaaaccacaa 28662
>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence Length = 147107 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 501 atcccgttagcccaaccctcttcc 524 |||||||||||||| ||||||||| Sbjct: 28366 atcccgttagcccatccctcttcc 28343
>emb|AL450163.12| Human DNA sequence from clone RP11-384L19 on chromosome 1 Contains part of the gene for C-terminal PDZ domain ligand of neuronal nitric oxide synthase (CAPON), complete sequence Length = 208408 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ttctctgccttcaccactgg 390 |||||||||||||||||||| Sbjct: 119416 ttctctgccttcaccactgg 119435
>emb|AL135839.15| Human DNA sequence from clone RP1-188K17 on chromosome 6q22.22-23.3 Contains the part of the SGK gene for serum/glucocorticoid regulated kinase and a CpG island, complete sequence Length = 113673 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ccattgctggttactattac 64 |||||||||||||||||||| Sbjct: 34577 ccattgctggttactattac 34558
>emb|AL122058.19|HSJ813D12 Human DNA sequence from clone RP4-813D12 on chromosome 20 Contains the 5' end of the BMP7 gene for bone morphogenetic protein 7 (osteogenic protein 1), two novel genes and a CpG island, complete sequence Length = 101473 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tggatgatgaaccttggcag 325 |||||||||||||||||||| Sbjct: 34937 tggatgatgaaccttggcag 34918
>emb|CR380947.1| Candida glabrata strain CBS138 chromosome A complete sequence Length = 485192 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 gcaaagatggatgatgaacc 318 |||||||||||||||||||| Sbjct: 430451 gcaaagatggatgatgaacc 430470
>gb|AF332547.1| Pseudomonas aeruginosa flagellar hook-associated protein 1 FlgK (flgK), flagellar hook-associated protein type 3 FlgL (flgL), and flagellar glycosyl transferase (fgtA) genes, complete cds; and unknown genes Length = 19758 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ttggccttggcgatggcatc 411 |||||||||||||||||||| Sbjct: 560 ttggccttggcgatggcatc 541
>emb|BX901976.22| Zebrafish DNA sequence from clone DKEY-101P20 in linkage group 22, complete sequence Length = 201928 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aatagtacataaacagagct 110 |||||||||||||||||||| Sbjct: 366 aatagtacataaacagagct 385
>gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence Length = 154505 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 596 aacatcagcagcaggctgca 615 |||||||||||||||||||| Sbjct: 119471 aacatcagcagcaggctgca 119490
>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence Length = 142102 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 501 atcccgttagcccaaccctcttcc 524 |||||||||||||| ||||||||| Sbjct: 119123 atcccgttagcccatccctcttcc 119100
>gb|AC068025.12| Homo sapiens chromosome 17, clone RP11-802D6, complete sequence Length = 190194 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 catgaataaagttacacaac 170 |||||||||||||||||||| Sbjct: 99610 catgaataaagttacacaac 99629
>emb|BX908757.10| Zebrafish DNA sequence from clone DKEY-206L1 in linkage group 22, complete sequence Length = 143845 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aatagtacataaacagagct 110 |||||||||||||||||||| Sbjct: 142211 aatagtacataaacagagct 142230
>gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence Length = 177565 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 596 aacatcagcagcaggctgca 615 |||||||||||||||||||| Sbjct: 164222 aacatcagcagcaggctgca 164203
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 caacatcagcagcaggctgc 614 |||||||||||||||||||| Sbjct: 10047883 caacatcagcagcaggctgc 10047864
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 596 aacatcagcagcaggctgca 615 |||||||||||||||||||| Sbjct: 12599384 aacatcagcagcaggctgca 12599403
>dbj|AK072853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135L10, full insert sequence Length = 1523 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 596 aacatcagcagcaggctgca 615 |||||||||||||||||||| Sbjct: 435 aacatcagcagcaggctgca 416
>emb|CR925781.6| Zebrafish DNA sequence from clone DKEY-3B23 in linkage group 10, complete sequence Length = 202134 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 gaatgactgagaggattgag 204 |||||||||||||||||||| Sbjct: 17570 gaatgactgagaggattgag 17551
>dbj|AK061008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-A08, full insert sequence Length = 1478 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 596 aacatcagcagcaggctgca 615 |||||||||||||||||||| Sbjct: 391 aacatcagcagcaggctgca 372
>emb|AL953841.5| Zebrafish DNA sequence from clone DKEY-44G23 in linkage group 22, complete sequence Length = 219929 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aatagtacataaacagagct 110 |||||||||||||||||||| Sbjct: 44647 aatagtacataaacagagct 44666
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 tgtcgagcttctctgccttc 382 |||||||||||||||||||| Sbjct: 127622 tgtcgagcttctctgccttc 127603
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 596 aacatcagcagcaggctgca 615 |||||||||||||||||||| Sbjct: 12606680 aacatcagcagcaggctgca 12606699
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 caacatcagcagcaggctgc 614 |||||||||||||||||||| Sbjct: 10119580 caacatcagcagcaggctgc 10119561
>emb|AL844522.7| Zebrafish DNA sequence from clone DKEY-113M9, complete sequence Length = 193193 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 gagaagccacaatactgacc 139 |||||||||||||||||||| Sbjct: 181122 gagaagccacaatactgacc 181141 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,206,358 Number of Sequences: 3902068 Number of extensions: 5206358 Number of successful extensions: 94916 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94555 Number of HSP's gapped (non-prelim): 322 length of query: 618 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 595 effective length of database: 17,143,297,704 effective search space: 10200262133880 effective search space used: 10200262133880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)