ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 1116 0.0
2emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 704 0.0
3emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMW... 486 e-134
4ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 256 7e-65
5dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 7e-65
6dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
7ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 190 4e-45
8gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 121 3e-24
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
10dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
11emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10 90 1e-14
12gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA 86 2e-13
13gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA 84 6e-13
14dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 84 6e-13
15emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-speci... 78 4e-11
16gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypept... 66 1e-07
17emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD... 62 2e-06
18gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypep... 62 2e-06
19emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide p... 54 5e-04
20dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 0.002
21dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 0.002
22emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS... 48 0.034
23gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.52
24dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complet... 44 0.52
25ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 ... 42 2.1
26gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 2.1
27gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 2.1
28gb|AY096544.1| Arabidopsis thaliana putative photosystem II poly... 42 2.1
29gb|AY070103.1| Arabidopsis thaliana putative photosystem II poly... 42 2.1
30gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-relat... 42 2.1
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
32emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Co... 42 2.1
33emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Co... 42 2.1
34emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Co... 42 2.1
35emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Co... 42 2.1
36emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Co... 42 2.1
37emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Co... 42 2.1
38gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete ... 42 2.1
39dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
40dbj|AP005654.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
41emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 6... 42 2.1
42gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone... 42 2.1
43gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 8.2
44gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, com... 40 8.2
45gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, co... 40 8.2
46gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
47gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, co... 40 8.2
48gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
49gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosom... 40 8.2
50gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome... 40 8.2
51gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 8.2
52gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosom... 40 8.2
53emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section... 40 8.2
54emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N... 40 8.2
55emb|BX571688.3| Zebrafish DNA sequence from clone DKEY-200H23, c... 40 8.2
56gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, comple... 40 8.2
57gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 8.2
58dbj|AK083570.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 8.2
59dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
60gb|AY696617.1| Pagrus major clone cm002740 microsatellite sequence 40 8.2
61dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor... 40 8.2
62dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
63gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, comple... 40 8.2
64gb|AC005901.1|AC005901 Homo sapiens chromosome 17, clone hRPK.15... 40 8.2
65dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full ... 40 8.2
66gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
67gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complet... 40 8.2
68emb|AL672298.4| Mouse DNA sequence from clone RP23-456D8 on chro... 40 8.2 
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Minus

                                                                       
Query: 39  tagtaattaattaaggatatttactgatttgcgggtagtgatatttgtatccattacata 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tagtaattaattaaggatatttactgatttgcgggtagtgatatttgtatccattacata 516

                                                                       
Query: 99  tgtcctgacggttataatccgcactattatacacatcgtttggtgcatagcttggtttgc 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgtcctgacggttataatccgcactattatacacatcgtttggtgcatagcttggtttgc 456

                                                                       
Query: 159 tgcacataggcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccag 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgcacataggcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccag 396

                                                                       
Query: 219 cagaattccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaac 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cagaattccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaac 336

                                                                       
Query: 279 gtcgccacttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgc 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtcgccacttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgc 276

                                                                       
Query: 339 tccatacttgtcggcaaactggtaaacacccttccccttggctacccttccagacgcatc 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tccatacttgtcggcaaactggtaaacacccttccccttggctacccttccagacgcatc 216

                                                                       
Query: 399 gacgccttccttgaacgccactccaccaccaggcccgtagggttgggcagtctggacctt 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gacgccttccttgaacgccactccaccaccaggcccgtagggttgggcagtctggacctt 156

                                                                       
Query: 459 cttcgccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgcctccaag 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 cttcgccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgcctccaag 96

                                                                       
Query: 519 cttggatcgttgtaacagaggagaggaagatggtttcagagccaaagatgccatgacaca 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  cttggatcgttgtaacagaggagaggaagatggtttcagagccaaagatgccatgacaca 36

                                  
Query: 579 ggcagacatgttgtttgtgcaac 601
           |||||||||||||||||||||||
Sbjct: 35  ggcagacatgttgtttgtgcaac 13
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score =  704 bits (355), Expect = 0.0
 Identities = 371/375 (98%), Gaps = 2/375 (0%)
 Strand = Plus / Minus

                                                                       
Query: 226 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 318

                                                                       
Query: 286 cttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatac 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatac 258

                                                                       
Query: 346 ttgtcgg-caaactggtaaacacccttccccttggctacccttcca-gacgcatcgacgc 403
           |||||||   |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 257 ttgtcggnhdaactggtaaacacccttccccttggctacccttccaagacgcatcgacgc 198

                                                                       
Query: 404 cttccttgaacgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcg 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cttccttgaacgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcg 138

                                                                       
Query: 464 ccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttgg 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttgg 78

                                                                       
Query: 524 atcgttgtaacagaggagaggaagatggtttcagagccaaagatgccatgacacaggcag 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  atcgttgtaacagaggagaggaagatggtttcagagccaaagatgccatgacacaggcag 18

                          
Query: 584 acatgttgtttgtgc 598
           |||||||||||||||
Sbjct: 17  acatgttgtttgtgc 3
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>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681
          Length = 247

 Score =  486 bits (245), Expect = e-134
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 354 aaactggtaaacacccttccccttggctacccttccagacgcatcgacgccttccttgaa 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaactggtaaacacccttccccttggctacccttccagacgcatcgacgccttccttgaa 188

                                                                       
Query: 414 cgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcgccttcttggc 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcgccttcttggc 128

                                                                       
Query: 474 cactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttggatcgttgtaa 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttggatcgttgtaa 68

                                                                       
Query: 534 cagaggagaggaagatggtttcagagccaaagatgccatgacacaggcagacatgttgtt 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  cagaggagaggaagatggtttcagagccaaagatgccatgacacaggcagacatgttgtt 8

                
Query: 594 tgtgc 598
           |||||
Sbjct: 7   tgtgc 3
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score =  256 bits (129), Expect = 7e-65
 Identities = 258/301 (85%)
 Strand = Plus / Minus

                                                                       
Query: 194 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 253
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 254 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtata 313
             || | ||||||||||||||| || || ||| ||| |||||| |||||||| || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 314 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 373
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                                                                       
Query: 374 ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 433
           ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 280 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 221

                                                                       
Query: 434 cgtagggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 493
           | ||||| ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 220 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 161

            
Query: 494 t 494
           |
Sbjct: 160 t 160



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 546 agatggtttcagagccaaagatgccatgacacaggcagacatgtt 590
           ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 108 agatggtttcagagccagagaagccatgacagaggcagccatgtt 64
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score =  256 bits (129), Expect = 7e-65
 Identities = 258/301 (85%)
 Strand = Plus / Minus

                                                                       
Query: 194 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 253
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 254 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtata 313
             || | ||||||||||||||| || || ||| ||| |||||| |||||||| || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 314 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 373
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                                                                       
Query: 374 ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 433
           ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 280 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 221

                                                                       
Query: 434 cgtagggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 493
           | ||||| ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 220 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 161

            
Query: 494 t 494
           |
Sbjct: 160 t 160



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 546 agatggtttcagagccaaagatgccatgacacaggcagacatgtt 590
           ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 108 agatggtttcagagccagagaagccatgacagaggcagccatgtt 64
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score =  248 bits (125), Expect = 2e-62
 Identities = 257/301 (85%)
 Strand = Plus / Minus

                                                                       
Query: 194 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 253
           |||||||||||| ||| ||||| |  ||| ||||||||||||| | |||||||||||  |
Sbjct: 461 tgtagacaagaatagcgccgccaactagacttccagcaagagtgattgcccagagaagta 402

                                                                       
Query: 254 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtata 313
             || | ||||||||||||||| || || ||| ||| |||||| |||||||| || ||||
Sbjct: 401 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 342

                                                                       
Query: 314 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 373
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 341 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 282

                                                                       
Query: 374 ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 433
           ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 281 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 222

                                                                       
Query: 434 cgtagggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 493
           | ||||| ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 221 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 162

            
Query: 494 t 494
           |
Sbjct: 161 t 161



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 546 agatggtttcagagccaaagatgccatgacacaggcagacatgtt 590
           ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 109 agatggtttcagagccagagaagccatgacagaggcagccatgtt 65
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>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  190 bits (96), Expect = 4e-45
 Identities = 177/204 (86%)
 Strand = Plus / Minus

                                                                       
Query: 175 gaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcaaga 234
           ||||||||||| |||||| |||||||||||||||||||  ||||||||||||||| ||||
Sbjct: 401 gaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattccagaaaga 342

                                                                       
Query: 235 gtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttggagac 294
           || ||||||||||| |||| ||| ||||||||||||  |||||| || |||||||| |||
Sbjct: 341 gtgactgcccagagcaacaaccctgtctttcctccagtataaacatcaccacttggtgac 282

                                                                       
Query: 295 cactcttctggtgtgtatatagggctgtacccatcaacatttgctccatacttgtcggca 354
           || || |||||  | ||||| |||||||| ||||||||||| ||||||||||||  ||||
Sbjct: 281 cattcctctgggttatatattgggctgtatccatcaacattagctccatacttgctggca 222

                                   
Query: 355 aactggtaaacacccttccccttg 378
           |||||||| || || |||||||||
Sbjct: 221 aactggtagacccctttccccttg 198
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>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score =  121 bits (61), Expect = 3e-24
 Identities = 154/185 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 ctgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaac 252
           ||||| |||||||||||||| ||   ||||| |||||||||||| | |||||||| ||  
Sbjct: 474 ctgtacacaagaagagcacctccacccagaagtccagcaagagtgattgcccagacaatg 415

                                                                       
Query: 253 agccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtat 312
           || || ||  |||||||||||||||| || ||||| |||||||| || ||||||| ||| 
Sbjct: 414 agaccagtggttcctccaacataaacatcaccactaggagaccattcgtctggtgagtag 355

                                                                       
Query: 313 atagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttc 372
           || |||||||| |||||||||||||| ||||| |||||  |||| ||||| |||||||| 
Sbjct: 354 atcgggctgtagccatcaacatttgcaccatatttgtccacaaattggtagacacccttt 295

                
Query: 373 ccctt 377
           |||||
Sbjct: 294 ccctt 290
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 1e-23
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                           
Query: 168     gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 227
               |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

                                                       
Query: 228     agcaagagtcactgcccagagaaacagccccgtctttcct 267
               || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 2490062 agaaagagtgactgcccagagcaacaaccctgtctttcct 2490023



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                         
Query: 319     ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 376
               ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 2487136 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 2487079



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                           
Query: 374     ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 433
               ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 2486995 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 2486936

                
Query: 434     c 434
               |
Sbjct: 2486935 c 2486935



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 319     ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 376
               ||||| ||||||||||| ||||||||||||  |||||||||||| || || |||||||
Sbjct: 2489753 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 2489696



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                        
Query: 194     tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 250
               |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 2487628 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 2487572



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 546     agatggtttcagagccaaagatgccatgacacaggcagacatgtt 590
               ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 2486597 agatggtttcagagccagagaagccatgacagaggcagccatgtt 2486553



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                          
Query: 265     cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgta 323
               ||||||||||| || || ||| ||| |||||| |||||||| || ||||| ||||||||
Sbjct: 2487433 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 2487375
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  119 bits (60), Expect = 1e-23
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                         
Query: 168   gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 227
             |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

                                                     
Query: 228   agcaagagtcactgcccagagaaacagccccgtctttcct 267
             || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 55042 agaaagagtgactgcccagagcaacaaccctgtctttcct 55003



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 319   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 376
             ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 52116 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 52059



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                         
Query: 374   ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 433
             ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 51975 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 51916

              
Query: 434   c 434
             |
Sbjct: 51915 c 51915



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 319   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 376
             ||||| ||||||||||| ||||||||||||  |||||||||||| || || |||||||
Sbjct: 54733 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 54676



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 194   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 250
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 52608 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 52552



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 546   agatggtttcagagccaaagatgccatgacacaggcagacatgtt 590
             ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 51577 agatggtttcagagccagagaagccatgacagaggcagccatgtt 51533



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 265   cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgta 323
             ||||||||||| || || ||| ||| |||||| |||||||| || ||||| ||||||||
Sbjct: 52413 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 52355
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>emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10
          Length = 639

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 265 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 324
           ||||||||||| || || |||||||||||||| || ||||   |||| || |||||||| 
Sbjct: 342 cctccaacatagacatcaccacttggagaccagtcatctgtgttgtagatggggctgtat 283

                                                                
Query: 325 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccctt 377
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||
Sbjct: 282 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttccctt 230
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>gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA
          Length = 438

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                       
Query: 265 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 324
           ||||||||||| || || || ||||||||||| || ||||   |||| || |||||||| 
Sbjct: 197 cctccaacatagacatcaccgcttggagaccagtcatctgtgttgtagatggggctgtat 138

                                                                  
Query: 325 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 379
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||||
Sbjct: 137 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttcccttgg 83
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>gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA
          Length = 373

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                       
Query: 265 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 324
           ||||||||||| || || || |||| |||||| || ||||   |||| || |||||||| 
Sbjct: 133 cctccaacatanacatcaccgcttgnagaccagtcatctgtgttgtagatggggctgtat 74

                                                                  
Query: 325 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 379
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||||
Sbjct: 73  ccatcaacatttgctccatatttgtcaacnaattggtaaacaccctttcccttgg 19
to top
>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 319   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 376
             ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 60883 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 60826



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                         
Query: 374   ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 433
             ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 60742 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 60683

              
Query: 434   c 434
             |
Sbjct: 60682 c 60682



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 194   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 250
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 61375 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 61319



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 546   agatggtttcagagccaaagatgccatgacacaggcagacatgtt 590
             ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 60344 agatggtttcagagccagagaagccatgacagaggcagccatgtt 60300



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 265   cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgta 323
             ||||||||||| || || ||| ||| |||||| |||||||| || ||||| ||||||||
Sbjct: 61180 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 61122
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>emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-specific ST-LS1 gene
          Length = 560

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                       
Query: 265 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 324
           ||||||||||| || || ||||||||||||||||| ||||   |||| || || ||||| 
Sbjct: 323 cctccaacatagacatcaccacttggagaccactcatctgtgttgtagatgggactgtat 264

                                                                  
Query: 325 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 379
           ||||||||||| |||||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 263 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 209
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>gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypeptide mRNA, complete
           cds
          Length = 584

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 313 atagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttc 372
           ||||| ||||| ||||||||||| || ||||| |||||  ||||||||||||||||||| 
Sbjct: 276 ataggactgtatccatcaacattagcaccatatttgtccacaaactggtaaacacccttt 217

                
Query: 373 ccctt 377
           |||||
Sbjct: 216 ccctt 212
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>emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD protein
          Length = 540

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                       
Query: 265 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 324
           ||||||||||| || || |||||||||||||| || || |   |||| || || ||||| 
Sbjct: 300 cctccaacatagacatcaccacttggagaccattcatccgtgttgtagatgggactgtat 241

                                                                  
Query: 325 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 379
           ||||||||||| |||||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 240 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 186
to top
>gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypeptide of photosystem II,
           complete cds
          Length = 590

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 75/87 (86%), Gaps = 2/87 (2%)
 Strand = Plus / Minus

                                                                       
Query: 319 ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacaccctt-cccctt 377
           ||||| ||||||||||| || |||||||||||  |||| |||||||||||||| ||| ||
Sbjct: 292 ctgtaaccatcaacattggcaccatacttgtcaacaaattggtaaacacccttgcccgtt 233

                                      
Query: 378 ggctacccttccagacgcatcgacgcc 404
           ||||  ||||||||||| ||| |||||
Sbjct: 232 ggct-tccttccagacgaatcaacgcc 207
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>emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide precursor of photosystem II
          Length = 632

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                       
Query: 265 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 324
           ||||||||||| || || |||||||||||||| || || |   |||| || || ||||| 
Sbjct: 323 cctccaacatagacatcaccacttggagaccattcatccgtgttgtagatgggactgtat 264

                                                                  
Query: 325 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 379
           ||||||||||| || ||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 263 ccatcaacattagccccatatttgtcaacatattggtacacaccctttcccttgg 209
to top
>dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT17N21, TM0403,
             complete sequence
          Length = 97807

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 319   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 376
             ||||| ||||||||||| || || ||||||||  || |||||||||||||||| ||||
Sbjct: 84239 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 84296
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>dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT26P21, TM0279b,
             complete sequence
          Length = 28275

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 319   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 376
             ||||| ||||||||||| || || ||||||||  || |||||||||||||||| ||||
Sbjct: 14725 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 14668
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>emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS1 gene
          Length = 3699

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 265  cctccaacataaacgtcgccacttggagaccactcttctg 304
            ||||||||||| || || ||||||||||||||||| ||||
Sbjct: 3042 cctccaacatagacatcaccacttggagaccactcatctg 3003



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 319  ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 376
            ||||| ||||||||||| |||||||| |||||  || | ||||| |||||||| ||||
Sbjct: 2892 ctgtatccatcaacattagctccatatttgtcaacatattggtacacaccctttccct 2835
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 486    cgacggcctcgccgatggtcgc 507
              ||||||||||||||||||||||
Sbjct: 577535 cgacggcctcgccgatggtcgc 577556
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>dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complete cds
          Length = 910

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 340 ccatacttgtcggcaaactggtaaacacccttcccctt 377
           |||||||||||  |||| ||||| ||||||||||||||
Sbjct: 355 ccatacttgtcaacaaattggtagacacccttcccctt 318
to top
>ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 mRNA, complete cds
          Length = 647

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 367
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 353 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 294

            
Query: 368 c 368
           |
Sbjct: 293 c 293
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 455     ccttcttcgccttcttggcca 475
               |||||||||||||||||||||
Sbjct: 2184158 ccttcttcgccttcttggcca 2184178
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 455     ccttcttcgccttcttggcca 475
               |||||||||||||||||||||
Sbjct: 2523514 ccttcttcgccttcttggcca 2523534
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>gb|AY096544.1| Arabidopsis thaliana putative photosystem II polypeptide
           (At1g79040) mRNA, complete cds
          Length = 454

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 367
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 286 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 227

            
Query: 368 c 368
           |
Sbjct: 226 c 226
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>gb|AY070103.1| Arabidopsis thaliana putative photosystem II polypeptide protein
           (At1g79040) mRNA, complete cds
          Length = 645

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 367
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 336 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 277

            
Query: 368 c 368
           |
Sbjct: 276 c 276
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>gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-related kinase (PRK2) mRNA,
            partial cds
          Length = 2892

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  aacataaacgtcgccacttgg 290
            |||||||||||||||||||||
Sbjct: 1465 aacataaacgtcgccacttgg 1485
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 32       agaacattagtaattaattaa 52
                |||||||||||||||||||||
Sbjct: 14999901 agaacattagtaattaattaa 14999881
to top
>emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZA04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 367
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 368 c 368
           |
Sbjct: 259 c 259
to top
>emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 367
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 368 c 368
           |
Sbjct: 259 c 259
to top
>emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB23ZD11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 576

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 367
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 315 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 256

            
Query: 368 c 368
           |
Sbjct: 255 c 255
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>emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS56ZH04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 367
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 368 c 368
           |
Sbjct: 259 c 259
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>emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 579

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 367
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 318 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 259

            
Query: 368 c 368
           |
Sbjct: 258 c 258
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>emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL27ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 588

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 367
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 321 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 262

            
Query: 368 c 368
           |
Sbjct: 261 c 261
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>gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete sequence
          Length = 611

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 308 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 367
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 353 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 294

            
Query: 368 c 368
           |
Sbjct: 293 c 293
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>dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0533E11
          Length = 150678

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 32   agaacattagtaattaattaa 52
            |||||||||||||||||||||
Sbjct: 5682 agaacattagtaattaattaa 5662
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>dbj|AP005654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0080M22
          Length = 140743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 32     agaacattagtaattaattaa 52
              |||||||||||||||||||||
Sbjct: 113759 agaacattagtaattaattaa 113739
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>emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 60S ribosomal protein L24 (RL24
            gene)
          Length = 1310

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 308  tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 367
            |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 1028 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 969

             
Query: 368  c 368
            |
Sbjct: 968  c 968
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>gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone bif11) photosystem II
           10kDa polypeptide mRNA, complete cds
          Length = 551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 308 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaa 356
           |||| ||||| ||||| |||||||| || || |||||||||||| ||||
Sbjct: 301 tgtagataggactgtatccatcaacgttcgcaccatacttgtcgacaaa 253
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 326     catcaacatttgctccatac 345
               ||||||||||||||||||||
Sbjct: 1176164 catcaacatttgctccatac 1176145
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>gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, complete sequence
          Length = 205300

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    cactcttctggtgtgtatat 314
              ||||||||||||||||||||
Sbjct: 143554 cactcttctggtgtgtatat 143573
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>gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, complete sequence
          Length = 197242

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  agtactgtagacaagaagag 208
            ||||||||||||||||||||
Sbjct: 4569 agtactgtagacaagaagag 4550
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>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0064E13, complete sequence
          Length = 150158

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   gacgccttccttgaacgcca 418
             ||||||||||||||||||||
Sbjct: 82024 gacgccttccttgaacgcca 82005
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>gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, complete sequence
          Length = 153145

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   acacccttccccttggctac 383
             ||||||||||||||||||||
Sbjct: 35663 acacccttccccttggctac 35644
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>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22,
              complete sequence
          Length = 177557

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    gacgccttccttgaacgcca 418
              ||||||||||||||||||||
Sbjct: 117754 gacgccttccttgaacgcca 117735
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>gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosome 6, complete sequence
          Length = 174507

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 574    acacaggcagacatgttgtt 593
              ||||||||||||||||||||
Sbjct: 118442 acacaggcagacatgttgtt 118461
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>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   ccagcagaattccagcaaga 234
             ||||||||||||||||||||
Sbjct: 25861 ccagcagaattccagcaaga 25880
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete
            sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 215  ccagcagaattccagcaaga 234
            ||||||||||||||||||||
Sbjct: 7108 ccagcagaattccagcaaga 7089
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>gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosome 7, complete sequence
          Length = 199810

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 533   acagaggagaggaagatggt 552
             ||||||||||||||||||||
Sbjct: 84446 acagaggagaggaagatggt 84465
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>emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section 19 of 21): from 3608981 to
              3809670
          Length = 200690

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    ttggtttgctgcacataggc 169
              ||||||||||||||||||||
Sbjct: 125094 ttggtttgctgcacataggc 125075
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>emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes
          Length = 14047

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 150  ttggtttgctgcacataggc 169
            ||||||||||||||||||||
Sbjct: 1312 ttggtttgctgcacataggc 1331
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>emb|BX571688.3| Zebrafish DNA sequence from clone DKEY-200H23, complete sequence
          Length = 181466

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aacattagtaattaattaag 53
             ||||||||||||||||||||
Sbjct: 53151 aacattagtaattaattaag 53170
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>gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, complete sequence
          Length = 187624

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   taaacacccttccccttggc 380
             ||||||||||||||||||||
Sbjct: 65315 taaacacccttccccttggc 65296
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 394     gcatcgacgccttccttgaa 413
               ||||||||||||||||||||
Sbjct: 2504750 gcatcgacgccttccttgaa 2504769
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>dbj|AK083570.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:D030046K16
           product:unclassifiable, full insert sequence
          Length = 2480

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 295 cactcttctggtgtgtatat 314
           ||||||||||||||||||||
Sbjct: 278 cactcttctggtgtgtatat 259
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 399      gacgccttccttgaacgcca 418
                ||||||||||||||||||||
Sbjct: 20071089 gacgccttccttgaacgcca 20071070



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 399      gacgccttccttgaacgcca 418
                ||||||||||||||||||||
Sbjct: 19940687 gacgccttccttgaacgcca 19940668
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>gb|AY696617.1| Pagrus major clone cm002740 microsatellite sequence
          Length = 734

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 549 tggtttcagagccaaagatg 568
           ||||||||||||||||||||
Sbjct: 408 tggtttcagagccaaagatg 389
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>dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: citb004m11
          Length = 2001

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 132 catcgtttggtgcatagctt 151
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442
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>dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H02, full
           insert sequence
          Length = 3198

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 gacgccttccttgaacgcca 418
           ||||||||||||||||||||
Sbjct: 240 gacgccttccttgaacgcca 221
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>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    agtactgtagacaagaagag 208
              ||||||||||||||||||||
Sbjct: 166431 agtactgtagacaagaagag 166412
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>gb|AC005901.1|AC005901 Homo sapiens chromosome 17, clone hRPK.15_K_2, complete sequence
          Length = 156763

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 37    attagtaattaattaaggatattt 60
             ||||||||||||| ||||||||||
Sbjct: 21714 attagtaattaataaaggatattt 21737
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>dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full insert sequence
          Length = 2001

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 132 catcgtttggtgcatagctt 151
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 399      gacgccttccttgaacgcca 418
                ||||||||||||||||||||
Sbjct: 20357765 gacgccttccttgaacgcca 20357746



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 399      gacgccttccttgaacgcca 418
                ||||||||||||||||||||
Sbjct: 20225666 gacgccttccttgaacgcca 20225647
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>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence
          Length = 190414

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 533    acagaggagaggaagatggt 552
              ||||||||||||||||||||
Sbjct: 170269 acagaggagaggaagatggt 170288
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>emb|AL672298.4| Mouse DNA sequence from clone RP23-456D8 on chromosome X, complete
             sequence
          Length = 204050

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    ttaaggatatttactgattt 68
             ||||||||||||||||||||
Sbjct: 34299 ttaaggatatttactgattt 34280


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,371,677
Number of Sequences: 3902068
Number of extensions: 5371677
Number of successful extensions: 145828
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145319
Number of HSP's gapped (non-prelim): 501
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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